BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07870.2
Length=2000
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470821 jgi|Araly1|470821|fgenesh2_kg.1__775__AT1G07870.1 2187 0.0
Ahg470820 jgi|Araly1|470820|fgenesh2_kg.1__774__AT1G07860.1 490 2e-137
> Ahg470821 jgi|Araly1|470821|fgenesh2_kg.1__775__AT1G07870.1
Length=1690
Score = 2187 bits (1184), Expect = 0.0
Identities = 1372/1461 (94%), Gaps = 20/1461 (1%)
Strand=Plus/Plus
Query 26 TAAGCTTTCTCTGTTTGTCACTAAGctctctctctctcCT-TCTTCTTCGAC--tttttt 82
||||||||||||||||||||||||||||| ||||||| || ||||||||||| ||||||
Sbjct 1 TAAGCTTTCTCTGTTTGTCACTAAGCTCTTTCTCTCT-CTCTCTTCTTCGACTTTTTTTT 59
Query 83 ttttcttcctctcttctctttggttttttggtgtt-gggttttatctgggttcctgattt 141
|||| || ||||||||||||| | || || ||||| |||||||||||||||| |||||||
Sbjct 60 TTTTTTTTCTCTCTTCTCTTT-GATTATTCGTGTTGGGGTTTTATCTGGGTTTCTGATTT 118
Query 142 ctt-cAACGAGGAAGGAAGGAAGAAGAAGAGA--AAA-GGGACAAGCGAGAATTACTCTT 197
|| |||||||||||||| |||| |||| ||| ||| ||||||||| |||| ||||||
Sbjct 119 -TTCCAACGAGGAAGGAA-GAAG-AGAAAAGATTAAAGGGGACAAGC--GAATAACTCTT 173
Query 198 TTCTCCTTCAATTTCCGATGGGTTGTTTCGGATGCAGTAAGAAATCGAGCAAACGATCCG 257
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 174 TTCTCCTTCAATTTCCAATGGGTTGTTTCGGATGCAGTAAGAAATCGAGCAAACGATCGG 233
Query 258 AGACTAACAAAGATACTGTCATAAATAGAAAAATTGTCGGTGGTACTACGAGCGTTGCT- 316
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | |
Sbjct 234 AGACTAACAAAGATACTGTCATAAATAGAAAAATCGTCGGTGGCACTACGAGCGTCG-TG 292
Query 317 AAGAGTGATAAGCGAGACGATCAGACTCAGCCCAGTTCAGATTCAACAAAAGTCAGTCCA 376
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 293 AAGAGCGATAAGCGAGACGATCAGACTCAACCCAGTTCAGATTCAACAAAAGTCAGTCCA 352
Query 377 TATAGAGATGTAAACAATGAAGGAGGAGTTGGTAAGGAAGATCAGTTATCTTTGGATGTG 436
||| ||||||| ||||||| | ||||||||| || ||||||||||||||| ||||||||
Sbjct 353 TATCGAGATGTTAACAATG-A--AGGAGTTGGGAAAGAAGATCAGTTATCTCTGGATGTG 409
Query 437 AAGGGTTTGAATCTAAATGACCAAGTCACAGGGAAGAAAGCACAGACTTTTACTTTTCAA 496
|||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 410 AAGGGTTTGAATTTGAATGATCAAGTCACAGGGAAGAAAGCACAGACTTTTACCTTTCAA 469
Query 497 GAACTTGCAGAAGCTACGGGAAACTTTAGATCGGATTGTTTTCTTGGTGAAGGAGGTTTC 556
|||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 470 GAACTTGCAGTAGCTACTGGAAACTTTAGATCGGATTGTTTTCTAGGTGAAGGAGGTTTT 529
Query 557 GGAAAAGTTTTCAAGGGAACTATAGAGAAATTGGATCAGGTTGTTGCAATCAAGCAACTT 616
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 530 GGAAAAGTTTTCAAGGGAACTTTAGAGAAATTGGATCAGGTTGTTGCGATCAAGCAACTT 589
Query 617 GATCGTAATGGGGTTCAAGGAATCAGGGAATTTGTGGTTGAGGTATTGACTCTAAGTCTT 676
|| ||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||
Sbjct 590 GACCGTAATGGGGTTCAAGGTATCAGGGAATTTGTTGTTGAGGTACTGACTCTAAGTCTT 649
Query 677 GCTGACCATCCGAATCTTGTGAAGCTTATTGGGTTTTGTGCTGAGGGTGATCAGAGACTA 736
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GCTGACCATCCGAATCTCGTGAAGCTTATTGGGTTTTGTGCTGAGGGTGATCAGAGACTA 709
Query 737 CTGGTGTACGAGTATATGCCGCAAGGATCCCTTGAAGATCATCTACATGTTCTCCCTTCT 796
|||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 710 TTGGTCTACGAGTATATGCCGCAAGGATCTCTTGAAGATCATCTACATGATCTCCCTTCT 769
Query 797 GGTAAAAAGCCTCTTGACTGGAACACCCGGATGAAAATAGCAGCTGGTGCAGCAAGAGGT 856
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 GGTAAAAAACCTCTTGATTGGAACACCCGGATGAAAATAGCAGCTGGTGCAGCAAGAGGT 829
Query 857 TTAGAGTATCTGCATGACAGAATGACGCCCCCTGTGATTTACCGAGATCTTAAATGTTCG 916
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 830 TTAGAGTATCTGCATGACAGAATGACGCCCCCAGTGATTTACCGAGACCTTAAATGTTCG 889
Query 917 AATATTTTGCTTGGTGAAGACTATCAACCGAAACTATCTGACTTTGGGTTGGCTAAAGTA 976
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 890 AATATTTTGCTTGGTGAAGACTATCATTCGAAACTATCTGACTTTGGATTGGCTAAAGTA 949
Query 977 GGACCAAGCGGGGATAAAACCCATGTCTCGACAAGGGTTATGGGAACGTACGGATACTGT 1036
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 950 GGACCAAGCGGGGATAAAACCCATGTCTCCACAAGGGTTATGGGAACATACGGATACTGT 1009
Query 1037 GCTCCTGACTACGCTATGACGGGTCAGCTCACATTTAAATCCGATATATACAGTTTTGGA 1096
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GCTCCTGACTACGCTATGACTGGTCAGCTCACATTTAAATCCGATATATACAGTTTTGGA 1069
Query 1097 GTAGTCCTTCTCGAGCTTATCACCGGAAGGAAAGCGATTGACAATACAAAAACGCGTAAA 1156
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1070 GTCGTCCTTCTCGAGCTTATCACCGGAAGGAAAGCAATTGACAATACAAAAACGCGTAAA 1129
Query 1157 GATCAGAATTTGGTTGGATGGGCACGACCATTGTTCAAAGACAGGAGGAACTTCCCAAAA 1216
||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1130 GATCAAAATTTGGTTGGATGGGCACGGCCGTTGTTCAAAGACAGGAGGAACTTCCCGAAA 1189
Query 1217 ATGGTTGATCCATTGCTTCAGGGACAATACCCAGTTAGAGGACTGTACCAAGCACTAGCA 1276
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1190 ATGGTTGATCCATTGCTTCAGGGACAATACCCGGTTAGAGGACTGTACCAAGCACTAGCA 1249
Query 1277 ATATCAGCAATGTGCGTTCAAGAGCAGCCTACCATGAGACCAGTGGTATCTGATGTAGTA 1336
|| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1250 ATTTCAGCAATGTGCGTTCAAGAGCAGCCAAGCATGAGACCAGTGGTATCTGATGTAGTA 1309
Query 1337 TTGGCTCTCAACTTCTTAGCCTCTTCTAAATATGATCCGAATAGCCCTAGCAGCAGCAGC 1396
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1310 TCGGCTCTCAACTTCTTAGCCTCTTCGAAATATGATCCGAATAGCCCTAGCAGCAGCAGC 1369
Query 1397 GGGAAGAACCCTTCTTTTCACAGAGACAGAGATGATGAAGAGAAAAGACCACACCTCGTC 1456
||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1370 AGGAAGAACCCTTCCTTTCACAGAGATAGAGATGATGAAGAGAAAAGACCAGACCTCGTC 1429
Query 1457 AAGGAAACTGAATGTGAAGGA 1477
|| ||||| |||| |||||||
Sbjct 1430 AAAGAAACCGAATATGAAGGA 1450
> Ahg470820 jgi|Araly1|470820|fgenesh2_kg.1__774__AT1G07860.1
Length=422
Score = 490 bits (265), Expect = 2e-137
Identities = 345/382 (90%), Gaps = 12/382 (3%)
Strand=Plus/Plus
Query 1474 AGGAAGGACAGGA-AACACCCGGAGAGGGATATTTCCGGTATCGGAGTATTGGATCCATG 1532
||||| ||| | | ||| | ||||||||||| ||||||||||||||||| |||||||| |
Sbjct 52 AGGAA-GAC-GCAGAACTCGCGGAGAGGGATTTTTCCGGTATCGGAGTACTGGATCCACG 109
Query 1533 CAATTCCGGTGATCGTTTTTCTCTGTTTCTTCACCCTCTGGATTTTCTCCCACTCAGTGA 1592
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 110 CAATTCCCGTGATCGTTTTTCTCTGCTTCTTCACCCTTTGGATTTTCTCCCACTCAGTGA 169
Query 1593 GCGTCATGAACGATGGAGAGATAATGTCGATACATCGTCTTGAGAAATCCATGGCCGTGA 1652
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 170 GCGTCATGAACGATGGAGAGATAATGTCGATACATCGTCTCGAGAAATCCATGGCTGTGA 229
Query 1653 GAAACGAGTCTCATGTCAGTTTAGCGATTCTTGCTTCCTCTGCTGTTTCACCAGCCTCCT 1712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 GAAACGAGTCTCATGTCAGTTTAGCGATTCTTGCTTCCTCTGCTGTTTCACCAGCCTC-- 287
Query 1713 CAGCTCTCGTCGCCGTCGTCTCTACCAATCAGAATCTCACAACTTTTCACAACGCAACTC 1772
|| |||||||| || ||| |||||||| ||||| |||||| |||||||||||| |
Sbjct 288 -AGGTCTCGTCG---TC-TCT--ACCAATCAAAATCTGACAACTCCTCACAACGCAACCC 340
Query 1773 AATCGCAGCAAAATGCAACCCAGTCGGTGAACAAAGCAAAACAGCCACACGCAGTCTAAT 1832
||||||||||||| || || || ||||||||||||||||| ||||||||||| |||| ||
Sbjct 341 AATCGCAGCAAAACGCCACTCAATCGGTGAACAAAGCAAAGCAGCCACACGCCGTCTGAT 400
Query 1833 CTCTGAACGGAGAAAAGTTTCT 1854
|||||| |||||||||||||||
Sbjct 401 CTCTGACCGGAGAAAAGTTTCT 422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75190143630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5