BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07880.2
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910483 jgi|Araly1|910483|Al_scaffold_0001_737 1718 0.0
> Ahg910483 jgi|Araly1|910483|Al_scaffold_0001_737
Length=1092
Score = 1718 bits (930), Expect = 0.0
Identities = 1040/1094 (95%), Gaps = 4/1094 (0%)
Strand=Plus/Plus
Query 34 ATGGAGAAAAGGGAAGATGGAGGGATCTTGACATATGATGGTAGATATGTTATGTACAAT 93
|||||||| | ||||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGAGAAGATGGAAGATGGTGGAATCTTGACATATAATGGTAGATATGTTATGTACAAT 60
Query 94 GTACTCGGTAACATTTTCGAGCTATCTTCAAAATACATCCCTCCTATTGAACCCA-TCGG 152
|||||||||||||||||||||||||||||||||||||| ||||||||| || ||| ||||
Sbjct 61 GTACTCGGTAACATTTTCGAGCTATCTTCAAAATACATTCCTCCTATTCAA-CCAGTCGG 119
Query 153 CCGAGGTGCTTATGGTATTGTCTGCTGTGCTACAAACTCAGAGACAAATGAAGAGGTTGC 212
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCGAGGTGCCTATGGTATTGTCTGCTGTGCTACAAACTCAGAGACAAATGAAGAGGTTGC 179
Query 213 TATAAAGAAGATAGCAAACGCGTTTGACAACAGAGTTGATGCTAAAAGAACTCTCCGAGA 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 180 TATAAAGAAGATAGCAAACGCGTTTGACAACAGAGTTGATGCTAAAAGAACTCTCAGAGA 239
Query 273 GATCAAGCTCCTTTCCCACATGGATCATGACAATGTTATCAAAATTAAAGATATAATTGA 332
|||||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 240 GATCAAACTCCTTTGCCACATGGATCATGACAACGTTATCAAAATGAAAGATATAATTGA 299
Query 333 GCTACCAGAGAAAGAAAGGTTCGAAGATGTATATATTGTTTATGAGTTGATGGATACAGA 392
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 300 GCCACCAGAGAAAGAAAGGTTCGAAGATGTGTATATTGTTTATGAGTTGATGGATACTGA 359
Query 393 TTTGCACCAGATCATTAGATCCACTCAAACTCTAACTGATGACCATTGTCAGTACTTCCT 452
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 360 TTTGCACCAGATCATTAGATCCACTCAAACTCTAACCGATGACCACTGTCAGTATTTCCT 419
Query 453 TTACCAAATTTTGAGAGGCCTTAAGTACATACACTCTGCAAATGTTCTTCACCGCGATCT 512
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 420 TTACCAAATTTTGAGAGGCCTAAAGTACATACACTCTGCAAATGTACTTCACCGCGACCT 479
Query 513 GAAACCGAGCAACTTGGTTCTGAATACGAACTGTGACCTGAAAATCTGTGATTTTGGGCT 572
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 480 GAAACCAAGCAACTTGGTTCTGAATACGAATTGTGACCTTAAAATCTGTGATTTTGGGCT 539
Query 573 AGCAAGAACGTCGAATGAGACAGAGATAATGACTGAGTATGTTGTGACGAGATGGTACCG 632
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGCAAGAACTTCGAATGAGACAGAGATAATGACTGAGTATGTTGTGACGAGATGGTACCG 599
Query 633 TGCACCTGAATTGCTTCTCAACAGCTCTGAATACACAGGAGCTATTGACATTTGGTCTGT 692
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 600 TGCACCTGAATTGCTTCTCAACAGCTCTGAATACACAGGAGCAATTGATATTTGGTCTGT 659
Query 693 TGGTTGCATTTTCATGGAGATACTTAGAAGAGAGACGCTTTTCCCTGGTAAAGATTACGT 752
|||||| || |||||||||||||| | ||||||||| |||||||| ||||||||||||||
Sbjct 660 TGGTTGTATATTCATGGAGATACTCATAAGAGAGACACTTTTCCCCGGTAAAGATTACGT 719
Query 753 TCAGCAGCTGAAACTTATTACTGAGCTCTTAGGGTCACCAGATGACTCGGATCTCGACTT 812
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCAACAGCTGAAACTTATCACTGAGCTCTTAGGGTCACCAGATGACTCGGATCTCGACTT 779
Query 813 CTTGAGAAGCGATAATGCGCGGAAGTACGTAAAACAACTCCCACATGTTCAAAAACAATC 872
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTTGAGAAGCGATAATGCGCGAAAGTACGTAAAACAACTCCCACATGTTCAAAAACAATC 839
Query 873 ATTCAGAGAAAAGTTTCCAAACATTTCCCCAATGGCTCTAGATCTTGCTGAAAAGATGCT 932
||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 840 ATTCAGAGAAACGTTTCCAGACATTTCCCCAATGGCTTTAGATCTTGCTGAAAAGATGCT 899
Query 933 AGTTTTCGATCCTTC-AAAGCGCATCACAGTGGATGAAGCATTGAAGCAGCCGTACTTGG 991
|||||||||||||| ||| |||||||||||||| |||||| ||||||||||||||||||
Sbjct 900 GGTTTTCGATCCTTCCAAA-CGCATCACAGTGGAGGAAGCACTGAAGCAGCCGTACTTGG 958
Query 992 CAAGTCTCCATGAGATCAACGAAGAACCAACATGTCCTACTCCTTTCAGCTTTGACTTTG 1051
||||||||||||||||||||||||||||||| |||||| | ||||||||||| |||||||
Sbjct 959 CAAGTCTCCATGAGATCAACGAAGAACCAACGTGTCCTTCGCCTTTCAGCTTCGACTTTG 1018
Query 1052 AGGAGACAGCCTTAGATGAACAAGACATCAAGGAGCTTGTCTGGAGAGAGTCTTTACACT 1111
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGGAGACAGCCTTGGATGAACAAGACATCAAGGAGCTTGTCTGGAGAGAGTCTTTACACT 1078
Query 1112 TCAAGAATATGTAA 1125
||||||||| ||||
Sbjct 1079 TCAAGAATAAGTAA 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47043679578
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5