BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07890.3
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470824 jgi|Araly1|470824|fgenesh2_kg.1__778__AT1G07890.1 1576 0.0
Ahg933464 jgi|Araly1|933464|scaffold_401452.1 383 1e-105
Ahg930190 jgi|Araly1|930190|scaffold_302647.1 265 6e-70
Ahg933328 jgi|Araly1|933328|scaffold_401316.1 174 1e-42
> Ahg470824 jgi|Araly1|470824|fgenesh2_kg.1__778__AT1G07890.1
Length=1166
Score = 1576 bits (853), Expect = 0.0
Identities = 948/993 (95%), Gaps = 9/993 (1%)
Strand=Plus/Plus
Query 31 TTAGCTAAGATGACGAAGAACTACCCAACCGTGAGCGAAGATTACAAGAAGGCTGTTGAG 90
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 182 TTAGCTAAGATGACGAAGAACTACCCAACCGTGAGCGAGGATTACAAGAAAGCTATTGAG 241
Query 91 AAGTGCAGGAGGAAGCTCAGAGGTTTGATCGCTGAGAAGAACTGTGCACCCATCATGGTC 150
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 242 AAGTGCAAGAGGAAGCTCAGAGGTTTGATAGCTGAGAAGAACTGTGCACCCATCATGGTC 301
Query 151 CGACTCGCATGGCACTCTGCTGGAACTTTCGATTGTCAATCAAGGACTGGAGGTCCATTC 210
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 302 CGACTCGCGTGGCACTCTGCTGGAACTTTCGATTGTCAATCGAGGACTGGAGGTCCATTC 361
Query 211 GGAACAATGAGGTTTGACGCTGAGCAAGCTCATGGAGCCAACAGTGGTATCCACATTGCT 270
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 362 GGAACAATGAGGTTTGATGCTGAGCAAGCTCATGGAGCCAACAGTGGTCTCCACATTGCT 421
Query 271 CTTAGGTTGTTGGACCCCATCAGGGAGCAATTCCCTACCATCTCTTTTGCTGATTTCCAT 330
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 422 CTTAGGTTGTTGGATCCCATCAGGGAGCAATTCCCAACCATCTCTTTTGCTGATTTCCAT 481
Query 331 CAGCTTGCTGGTGTTGTGGCCGTTGAAGTTACTGGTGGCCCTGACATTCCTTTCCACCCT 390
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 482 CAGCTTGCTGGTGTTGTGGCCGTTGAAGTTACTGGTGGCCCTGAAATTCCTTTCCACCCT 541
Query 391 GGAAGAGAGGACAAGCCCCAACCACCTCCAGAGGGTCGTCTTCCTGATGCTACCAAGGGT 450
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 542 GGAAGAGAGGACAAGCCCCAGCCACCTCCTGAGGGTCGTCTTCCTGATGCTACCAAGGGT 601
Query 451 TGTGACCATTTGAGAGATGTCTTTGCTAAGCAGATGGGCTTATCTGACAAAGACATTGTC 510
||||| || |||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 602 TGTGATCACTTGAGAGACGTCTTTGCTAAGCAGATGGGCTTGTCTGACAAGGACATTGTC 661
Query 511 GCTTTATCTGGTGCCCACACTCTGGGACGATGCCACAAGGATAGGTCTGGCTTCGAAGGT 570
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 662 GCTTTATCTGGTGCCCACACTCTGGGAAGATGCCACAAGGATAGGTCTGGCTTTGAAGGT 721
Query 571 GCATGGACATCAAACCCTCTAATCTTCGACAACTCTTACTTCAAGGAACTCTTGAGCGGA 630
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 722 GCCTGGACTTCAAACCCTCTAATCTTTGACAACTCTTACTTCAAGGAACTCTTGAGCGGA 781
Query 631 GAGAAGGAAGGCCTTCTTCAGCTTGTCTCTGACAAAGCACTATTGGACGACCCTGTTTTC 690
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 782 GAGAAGGAAGGCCTTCTTCAGCTTGTCTCTGACAAGGCGCTATTGGACGACCCTGTTTTC 841
Query 691 CGTCCTTTGGTCGAGAAATACGCTGCTGATGAAGATGCCTTTTTCGCTGATTACGCTGAG 750
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 842 CGTCCTTTGGTCGAGAAATACGCTGCTGATGAAGATGCCTTTTTCGCTGATTACGCCGAG 901
Query 751 GCCCACATGAAGCTTTCTGAGCTTGGGTTTGCTGATGCTTAAGCTGTGACGTATGCTCtg 810
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 902 GCCCACATGAAGCTTTCTGAGCTTGGGTTTGCTGATGCTTAAGCTCTGACGTATG-T-TG 959
Query 811 tgtgtgtgtgtgtgtCTCCCCGAGAGTCATGGCTGTTTTTGGTTGGGGGCTGGAGGGGTC 870
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGTGTGTGTGTGTGTCT--CCGAGAGTCATGGCTGTTTTTGGTTGGGGGCTGGAGGGGTC 1017
Query 871 GCATTGCATTTGAACTTTGTCATATGATTGCTTAATGTACTCTCGGATTTACGTATCTGt 930
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 1018 GCATTGCATTTGAACTTTGTCATATGATTGCTTAATGTACTCTCAGATTTGCGTATCT-T 1076
Query 931 ttttttCGGTGGGTTGC-GATTTGAACACATCCGTTGCGCTTTTGCTGCTTAGACACATT 989
|||||||||||||| | ||||||| |||||||||||||||||||||| |||||| ||
Sbjct 1077 GTTTTTCGGTGGGTT-CTGATTTGA-CACATCCGTTGCGCTTTTGCTGGTTAGACTT-TT 1133
Query 990 AATAAAATTAATTTCTCTCGATATTTATGCCTC 1022
|||||||||||||| |||| |||||||||||||
Sbjct 1134 AATAAAATTAATTTATCTCAATATTTATGCCTC 1166
> Ahg933464 jgi|Araly1|933464|scaffold_401452.1
Length=352
Score = 383 bits (207), Expect = 1e-105
Identities = 288/324 (89%), Gaps = 17/324 (5%)
Strand=Plus/Plus
Query 159 ATGGCACTCTGCTGGAACTTTCGATTGTCAATCAAGGACTGGAGGTCCATTCGGAACAAT 218
||||||||| |||||||||| || ||||| |||||||||||||| ||||||||||||||
Sbjct 46 ATGGCACTCAGCTGGAACTTCCG--TGTCAGTCAAGGACTGGAGGCCCATTCGGAACAAT 103
Query 219 GAGGTTTGACGCTGAGCAAGCTCATGGAGCCAACAGTGGTATCCACATTGCTCTTAGGTT 278
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 GAGGTTTGATGCTGAGCAAGCTCATGGAGCCAACAGTGGTATCCACATTGCTCTTAGGTT 163
Query 279 GTTGGACCCCATCAGGGAGCAATTCCCTACCATCTCTTTTGCTGATTTCCATCAGCTTGC 338
||| |||||||||||||||||||||||||| ||||||||| || | ||| |
Sbjct 164 GTTTGACCCCATCAGGGAGCAATTCCCTACTATCTCTTTT-CT--T--------GCT-GA 211
Query 339 TGGTGTTGTGGCCGTTGAAGTTACTGGTGGCCCTGACATTCCTTTCCACCCTGGAAGAGA 398
||| | ||||| ||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 212 -GGT-T-GTGGCTGTTGAAGTTACTGGTGGCCCTGAAATTCCTTTCTACCCTGGAAGAGA 268
Query 399 GGACAAGCCCCAACCACCTCCAGAGGGTCGTCTTCCTGATGCTACCAAGGGTTGTGACCA 458
|||||||||||| |||||||||||||||||||||||||||||||| ||| || ||| ||
Sbjct 269 GGACAAGCCCCAGCCACCTCCAGAGGGTCGTCTTCCTGATGCTACAAAGACTTTTGATCA 328
Query 459 TTTGAGAGATGTCTTTGCTAAGCA 482
| |||||||||||||||||||||
Sbjct 329 CTAGAGAGATGTCTTTGCTAAGCA 352
> Ahg930190 jgi|Araly1|930190|scaffold_302647.1
Length=376
Score = 265 bits (143), Expect = 6e-70
Identities = 155/161 (96%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 159 ATGGCACTCTGCTGGAACTTTCGATTGTCAATCAAGGACTGGAGGTCCATTCGGAACAAT 218
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 41 ATGGCACTCTGCTGGAACTTTCGATTGTCAATCGAGGACTGGAGGTCCATTCGGAACAAT 100
Query 219 GAGGTTTGACGCTGAGCAAGCTCATGGAGCCAACAGTGGTATCCACATTGCTCTTAGGTT 278
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 GAGGTTTGATGCTGAGCAAGCTCATGGAGCCAACAGTGGTATCCACATTGCTCTTAGGTT 160
Query 279 GTTGGACCCCATCAGGGAGCAATTCCCTACCATCTCTTTTG 319
|||||| ||||||||||||||||| | ||| ||||||||||
Sbjct 161 GTTGGATCCCATCAGGGAGCAATTACTTACTATCTCTTTTG 201
Score = 196 bits (106), Expect = 2e-49
Identities = 124/133 (93%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 400 GACAAGCCCCAACCACCTCCAGAGGGTCGTCTTCCTGATGCTACCAAGGGTTGTGACCAT 459
||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 201 GACAAGCCCCAGCCACCTCCAGAGGGTCGTCTTCCTGATGCTACAAAGGGTTTTGATCAC 260
Query 460 TTGAGAGATGTCTTTGCTAAGCAGATGGGCTTATCTGACAAAGACATTGTCGCTTTATCT 519
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 261 TTGAGAGATGTCTTTGCTAAGCAGATGGGCTTCTCTGACAAGGACATTGTCGCCTTATCC 320
Query 520 GGTGCCCACACTC 532
|||||||||||||
Sbjct 321 GGTGCCCACACTC 333
> Ahg933328 jgi|Araly1|933328|scaffold_401316.1
Length=326
Score = 174 bits (94), Expect = 1e-42
Identities = 112/121 (93%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 412 CCACCTCCAGAGGGTCGTCTTCCTGATGCTACCAAGGGTTGTGACCATTTGAGAGATGTC 471
||||||| |||||||||||||||||||||||| ||||||| ||| || ||||| |||||
Sbjct 163 CCACCTCGAGAGGGTCGTCTTCCTGATGCTACAAAGGGTTTTGATCACTTGAGTGATGTA 222
Query 472 TTTGCTAAGCAGATGGGCTTATCTGACAAAGACATTGTCGCTTTATCTGGTGCCCACACT 531
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 223 TTTGCTAAGCAGATGGGCTTGTCTGACAAGGACATTGTCGCTTTATCTGGTGCCCACACT 282
Query 532 C 532
|
Sbjct 283 C 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38008548249
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5