BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07900.1
Length=576
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311843 jgi|Araly1|311843|fgenesh1_pm.C_scaffold_1000623 843 0.0
> Ahg311843 jgi|Araly1|311843|fgenesh1_pm.C_scaffold_1000623
Length=573
Score = 843 bits (456), Expect = 0.0
Identities = 538/577 (93%), Gaps = 8/577 (1%)
Strand=Plus/Plus
Query 3 ATGGAGAGTAAAAGTGACGCTTCTGTCGCCACCACTCCAATCATATCTTCTTCCTCTTCT 62
||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||
Sbjct 1 ATGGAGAGTAAAAGTGACGCTTCCGCCGCCACCACTCCAATCATCTCTTCTTCTTCTTCT 60
Query 63 CCTCCACCATCACTTTCACCGCGGGTAGTGCTTAGTCCATGTGCTGCTTGCAAAATCTTG 122
||||||||| | |||||||| |||| || || || ||||| ||||||||||||||||||
Sbjct 61 CCTCCACCACCTTTTTCACCGAGGGTGGTACTCAGCCCATGCGCTGCTTGCAAAATCTTG 120
Query 123 AGGCGACGTTGTGCAGAGAGATGCGTTTTGGCACCGTACTTCCCTCCAACGGATCCGGCC 182
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 AGGCGGCGTTGCGCAGAGAGATGCGTTTTGGCACCGTACTTCCCTCCAACGGATCCAGCC 180
Query 183 AAGTTCACTATTGCACACCGCGTCTTTGGAGCCAGCAACATCATTAAGTTCTTGCAGGAA 242
|| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 AAATTCACTATCGCCCACCGCGTTTTTGGAGCCAGCAACATCATTAAGTTCTTGCAGGAA 240
Query 243 CTTCCAGAATCACAAAGAACTGATGCGGTCAACAGTATGGTGTATGAAGCCGAAGCTAGA 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 CTTCCAGAATCACAAAGAACTGATGCGGTCAACAGTATGGTGTATGAAGCCGAAGCTCGA 300
Query 303 ATAAGAGATCCAGTGTATGGATGTGCAGGTGCCATATACCATTTACAAAGACAAGTGAGT 362
|| ||||||||||||||||||||||||||| | ||||||||| ||||| |||||||||||
Sbjct 301 ATTAGAGATCCAGTGTATGGATGTGCAGGTTCTATATACCATCTACAACGACAAGTGAGT 360
Query 363 GAACTCCAAGCACAACTTGCAAAAGCTCAAGTGGAGATGGTGAATATGCAATTTCAAAGA 422
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 GAACTCCAAGCACAACTTGCAAAATCTCAAGTGGAGATGGTGAATATGCAATTTCAAAGA 420
Query 423 TCAAATTTACTAGAGCTGA-TTTATAACATGGACCAACAACAGAAACAAGAACAAGATAA 481
||||||||||||||| | | ||||||| ||||||||||| ||| ||||||||||||||
Sbjct 421 TCAAATTTACTAGAGTT-ACTTTATAAAATGGACCAACA---GAACCAAGAACAAGATAA 476
Query 482 TAT---GTCCTTTGAGAGCAATGATTTGGGATTCCTTGAAGACAAGTCCAACACCAACTC 538
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 477 TATATTGTCCTTTGAGAGCAATGATTTGGGATTCCTTGAAGACAACTCCAACACCAACTC 536
Query 539 ATCAATGTTGTGGTGGGATCCTCTTTGGACATGTTGA 575
|||||||||||||||||||||||||||||||||||||
Sbjct 537 ATCAATGTTGTGGTGGGATCCTCTTTGGACATGTTGA 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21061885128
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5