BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07950.1
Length=796
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470845 jgi|Araly1|470845|fgenesh2_kg.1__799__AT1G07950.1 710 0.0
Ahg312620 jgi|Araly1|312620|fgenesh1_pm.C_scaffold_1001400 575 2e-163
Ahg891744 jgi|Araly1|891744|Al_scaffold_0007_3730 335 3e-91
Ahg338146 jgi|Araly1|338146|fgenesh1_pg.C_scaffold_2000245 71.3 1e-11
> Ahg470845 jgi|Araly1|470845|fgenesh2_kg.1__799__AT1G07950.1
Length=666
Score = 710 bits (384), Expect = 0.0
Identities = 567/646 (88%), Gaps = 50/646 (8%)
Strand=Plus/Plus
Query 64 TGG-CGGATCCGGTGGAGGAAGCGGTCCAACGgccgccgccgccgccgcGGCTTTACAGA 122
||| |||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 32 TGGCCGGATCCGGTGGAGGAAGTGGCCCAACGGCTGCCGCCGCCGCCGCGGCTTTACAGA 91
Query 123 AGCAAAAGGCGTTGTTACAGAGAGTGGAGACTGACATCACATCTGTCGTCGATAACTTCA 182
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 92 AGCAAAAGGCGTTGTTGCAGAGAGTAGAGACTGACATCACATCTGTCGTCGATAACTTCA 151
Query 183 CGCAGATCGTCAATGTTTCAAGGGTGAGTGATCCGCCGGTGAAGAACTCGCAGG-AGACA 241
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 152 CGCAAATCGTCAATGTTTCAAGGGTGAGTGATCCGCCGGTGAAGAACTCGCAGGAAG-CT 210
Query 242 TACATGATGGAGATGCGAGCTTCTAGAATGGTTCAAGCAGCTGATTCTCTTTTGAAACTC 301
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 211 TACATGATGGAGATGCGAGCTTCTAGACTGGTTCAAGCAGCTGATTCTCTTTTGAAACTC 270
Query 302 GTATCAGAACTTAAGCAAACAGCGATATTTTCAGGATTTGCATCACTAAACGATCATGTA 361
| ||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 271 GAATCGGAACTGAAGCAAACAGCGATTTTTTCAGGATTTGCATCGCTAAACGATCATGTA 330
Query 362 GAACAAAGAATAGAAGAGTTTGATCAAGAGGCCGAGAAGACAAATCGATTGTTGGCTAGA 421
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 331 GAACAAAGAATAGGAGAGTTTGATCAAGAGGCCGAGAAGACAAATGGATTGTTGGCTAGA 390
Query 422 ATTGCTGATGATGCATCTGCCAATCTTAAAGAGCTCGAGTCTCACTATTACTCTTCTGCT 481
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 391 ATAGCTGATGATGCATCTGCCAGTCTTAAAGAGCTCGAGTCTCACTATTACTCTTCTGCT 450
Query 482 CAGAGATTGACTCTAGACATCTGATATTAGAATGCCTGGAGACACCAGAGGAAACAGATA 541
|||||||||||||| || | ||| | | | | || ||| ||||| ||
Sbjct 451 CAGAGATTGACTCT-GA--T---ATA---G---G-----A-A-AC-AGAT-AAACA-AT- 487
Query 542 AAACAATTGGTTCATAAACCAGAGGAAACGGC--------C-ATCGAAGGATATGCAGTT 592
| |||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 488 ------T-GGTTCATAAACCAGAGGAAACGGCATTAGAAGCCATCGGAGGATATGCAGTT 540
Query 593 TGAAGTCATGGACAACGTTTTGGACTATCCTTTCCCACATTGATCATATTTCCTCT-CTC 651
| ||||||||||||||||||||||| |||||||||| | ||||||| ||||||||| | |
Sbjct 541 TAAAGTCATGGACAACGTTTTGGACAATCCTTTCCC-CGTTGATCACATTTCCTCTAC-C 598
Query 652 A-A-TTCGCATA-TTACTTAGCAATCTTAAATGTTCCAGTCTGATG 694
| | || | ||| || ||| | |||||||||||||||| |||||
Sbjct 599 ATACTT-G-ATACTTGCTTTGTGGTCTTAAATGTTCCAGTTTGATG 642
Score = 60.2 bits (32), Expect = 2e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 702 GTTTGATGTTTTCATCAATCATTAGTGAtttt 733
||||||||||||||||||||||||||||||||
Sbjct 635 GTTTGATGTTTTCATCAATCATTAGTGATTTT 666
> Ahg312620 jgi|Araly1|312620|fgenesh1_pm.C_scaffold_1001400
Length=453
Score = 575 bits (311), Expect = 2e-163
Identities = 392/432 (91%), Gaps = 2/432 (0%)
Strand=Plus/Plus
Query 71 TCCGGTGGAGGAAGCGGTCCAACGgccgccgccgccgccgcGGCTTTACAGAAGCAAAAG 130
||||||||||||||||| || |||||||| || ||||| || || |||||||| ||||||
Sbjct 19 TCCGGTGGAGGAAGCGGACCGACGGCCGCGGCAGCCGCTGCTGCCTTACAGAAACAAAAG 78
Query 131 GCGTTGTTACAGAGAGTGGAGACTGACATCACATCTGTCGTCGATAACTTCACGCAGATC 190
|| ||| | ||||| || ||||||||||||||||||||||||||||||||||| || |||
Sbjct 79 GCCTTGATGCAGAGGGTAGAGACTGACATCACATCTGTCGTCGATAACTTCACTCAAATC 138
Query 191 GTCAATGTTTCAAGGGTGAGTGATCCGCCGGTGAAGAACTCGCAGG-AGACATACATGAT 249
|||||||| |||||||||||||||| || |||||||||| |||| || ||||||||||
Sbjct 139 GTCAATGTCGCAAGGGTGAGTGATCCACCAATGAAGAACTCTCAGGAAG-CATACATGAT 197
Query 250 GGAGATGCGAGCTTCTAGAATGGTTCAAGCAGCTGATTCTCTTTTGAAACTCGTATCAGA 309
|||||||||||| || ||| |||||||||||||||||||||||||||||||||| || ||
Sbjct 198 GGAGATGCGAGCGTCAAGATTGGTTCAAGCAGCTGATTCTCTTTTGAAACTCGTTTCGGA 257
Query 310 ACTTAAGCAAACAGCGATATTTTCAGGATTTGCATCACTAAACGATCATGTAGAACAAAG 369
||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 258 ACTGAAGCAAACCGCGATTTTTTCAGGATTTGCATCACTAAATGATCATGTAGAACAAAG 317
Query 370 AATAGAAGAGTTTGATCAAGAGGCCGAGAAGACAAATCGATTGTTGGCTAGAATTGCTGA 429
||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 318 AATTGCAGAGTTTGATCAAGAGGCCGAGAAGACGAATCGATTGTTGGCTAGAATTGCTGA 377
Query 430 TGATGCATCTGCCAATCTTAAAGAGCTCGAGTCTCACTATTACTCTTCTGCTCAGAGATT 489
|||||||||||| | |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 378 TGATGCATCTGCTAGCCTTAAAGAACTTGAGTCTCACTATTACTCTTCTGCTCAGAGATT 437
Query 490 GACTCTAGACAT 501
||||||||||||
Sbjct 438 GACTCTAGACAT 449
> Ahg891744 jgi|Araly1|891744|Al_scaffold_0007_3730
Length=276
Score = 335 bits (181), Expect = 3e-91
Identities = 214/230 (93%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 206 GTGAGTGATCCGCCGGTGAAGAACTCGCAGG-AGACATACATGATGGAGATGCGAGCTTC 264
||||||||| ||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 1 GTGAGTGATTCGCCGGTGAAGAACTCGCAGGAAG-CTTACATGATGGAGATGCGAGCTTC 59
Query 265 TAGAATGGTTCAAGCAGCTGATTCTCTTTTGAAACTCGTATCAGAACTTAAGCAAACAGC 324
|||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||||| |||
Sbjct 60 TAGACTGGTTCAAGCAGCAGATTCTCTTTTGAAACTCGTATCGGAACTGAAGCAAATAGC 119
Query 325 GATATTTTCAGGATTTGCATCACTAAACGATCATGTAGAACAAAGAATAGAAGAGTTTGA 384
|| ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||
Sbjct 120 AATTTTTTCAGGATTTGCATCGCTTAACGATTATGTAGAACAAAGAATAGAAGAGTTTGA 179
Query 385 TCAAGAGGCCGAGAAGACAAATCGATTGTTGGCTAGAATTGCTGATGATG 434
||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 180 TCAAGAGGCCGAGAAGACAAATCGATTGTTGGCTAGAATAGCTGTTGATG 229
> Ahg338146 jgi|Araly1|338146|fgenesh1_pg.C_scaffold_2000245
Length=999
Score = 71.3 bits (38), Expect = 1e-11
Identities = 41/42 (98%), Gaps = 1/42 (2%)
Strand=Plus/Plus
Query 532 GAAACAGATAAAACAATTGGTTCATAAACCAGAGGAAACGGC 573
||||||||| ||||||||||||||||||||||||||||||||
Sbjct 834 GAAACAGAT-AAACAATTGGTTCATAAACCAGAGGAAACGGC 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29392769007
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5