BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07960.2
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470848 jgi|Araly1|470848|fgenesh2_kg.1__802__AT1G07960.3 1203 0.0
> Ahg470848 jgi|Araly1|470848|fgenesh2_kg.1__802__AT1G07960.3
Length=854
Score = 1203 bits (651), Expect = 0.0
Identities = 751/798 (94%), Gaps = 11/798 (1%)
Strand=Plus/Plus
Query 449 GTTAACAGGACTGGTGAAGTATCAA-AATTTGGGGTTTTGCTACGATGACGCTAGGTGCT 507
|||||||||||||||||| ||| || ||||| ||| ||||||||||||||||| ||||||
Sbjct 48 GTTAACAGGACTGGTGAACTAT-AATAATTT-GGG-TTTGCTACGATGACGCTCGGTGCT 104
Query 508 CGGCTTGTTGCTCCCATGATTATACTTCTCCTTTTTATACCGATTGAATTAGTTAAAGCG 567
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 105 CGGCTTATTGCTCCCATGATTATACTTCTCCTTTTTGTACCGATTGAATTAGTTAAAGCG 164
Query 568 GAAGTCATTACACTGACACCAGAAACCTTTTCTGACAAGATAAAGGAGAAGGATACTGCG 627
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 165 GAAGTCATTACACTGACACCAGAAACCTTTTCTGACAAGATTAAGGAGAAAGATACTGCG 224
Query 628 TGGTTCGTAAAGTTTTGTGTTCCTTGGTGTAAACACTGCAAGAAACTGGGGAATTTGTGG 687
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 225 TGGTTTGTAAAGTTTTGTGTTCCTTGGTGTAAACACTGCAAGAAATTGGGGAATTTGTGG 284
Query 688 GAAGACTTGGGAAAAGCAATGGAGGGAGACGATGAAATTGAGGTTGGTGAAGTAGACTGT 747
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 285 GAAGAATTGGGAAAAGCAATGGAGGGAGACGATGAAATTGAAATTGGTGAAGTAGACTGT 344
Query 748 GGTACTAGCAGAGCTGTTTGCACCAAAGTTGAAATTCACTCGTATCCAACATTTATGCTA 807
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 345 GGTACTAGCAGAGCTGTTTGCACCAAAGTTGAAATTCACTCATATCCAACATTTATGCTA 404
Query 808 TTTTACAATGGAGAAGAAGTTTCGAAATATAAAGGAAAAAGAGACGTTGAATCGCTCAAG 867
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 405 TTTTACAATGGAGAAGAAGTTTCAAAATATAAAGGGAAAAGAGACGTTGAATCGCTTAAG 464
Query 868 GCTTTTGTTGTAGAGGAAACTGAAAAGGCAGCAGAAAAAGCACAGCTTGAAGACAAGGAA 927
|| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 465 GCGTTTGTTATAGAGGAAACTGAAAAGGCAGCAGAAAAAGCGCAGCTTGAAGACAAGGAA 524
Query 928 CTGTGATACAACTAGTCGGTGATTATTAGAACCTGATACATTGTTCCCTTTGGTTTTCAT 987
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 525 CTGTGATACAACTAGTCAGTGATTATTAGAACCTGATACATTATTCCCTTTGGTTTTCAG 584
Query 988 TTTGCCTATGCAGTTGTGTGACTCTTACCGTTAGTTAGATAGGCATGGTTTTCAGCACGA 1047
|||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct 585 TTTGCCTATGCAGTTGTGTGACTCTTACTGTTAGTTAGATAGGCATGGCTTCCAGCACGA 644
Query 1048 TGGAGGAGCATCTTTGGGTTTAAAGGTTTTT-CACACCACTGTTTTGCTAAAATATTCAG 1106
|||| || ||||||||| ||||||||||||| |||||||||||||| |||| || |||||
Sbjct 645 TGGACGAACATCTTTGGCTTTAAAGGTTTTTTCACACCACTGTTTT-CTAAGATTTTCAG 703
Query 1107 TTTCCATTTTAT-TCAGAGTCAGATAAGCAAAGAC-GTA-A-GTGTAGTTAGTCGAGATT 1162
|||||||||||| | | |||||||||||||||| | | | | ||| | ||||||||||||
Sbjct 704 TTTCCATTTTATCT-ACAGTCAGATAAGCAAAGGCAGAAGAAGTGCACTTAGTCGAGATT 762
Query 1163 TCTTACAAGTTTGTGTTGTATGTTCGTTTTAAGAGCAGCTGCAGACCAAAGTTCTTGCTT 1222
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 763 TCTTACAAGTTTGTGTTGTATGTTCGTTTTAAGAGCAGCTGCAGACAAAAGTTCTTGCTT 822
Query 1223 TAAAATTTCATATTCAGT 1240
| ||||||||||||||||
Sbjct 823 TGAAATTTCATATTCAGT 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46357467072
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5