BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07980.1
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334085 jgi|Araly1|334085|fgenesh1_pg.C_scaffold_1000650 568 4e-161
> Ahg334085 jgi|Araly1|334085|fgenesh1_pg.C_scaffold_1000650
Length=729
Score = 568 bits (307), Expect = 4e-161
Identities = 388/426 (91%), Gaps = 9/426 (2%)
Strand=Plus/Plus
Query 18 ATGGTGTCGTCAAAGAAACCCAAGGAGAAGAAGGCGAGGAGCGATGTCGTCGTCAATAAA 77
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGGTGTCGTCAAAGAAACCCAAGGAGAAGAAGGCGAGGAGCGATGCCGTCGTCAATAAA 60
Query 78 GC-GAGTGGTCGGAGTAAACGCAGCTCCGGTTCCAGAA-CGAAGAAGACGTCGAACAAGG 135
|| | |||| |||| || ||||||||||||||||| || ||| |||| || |||| ||||
Sbjct 61 GCTG-GTGGCCGGAATACACGCAGCTCCGGTTCCA-AAGCGAGGAAGGCGACGAATAAGG 118
Query 136 TTAACATTGTGAAGAAGAAGCCGGAGATTTACGAGATCTCAGAATCATCGAGCAGTGACT 195
| ||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||
Sbjct 119 TCAACATTGTGAAGAAGGTGCCGGAGATTCACGAGATCTCAGAATCTTCGAGCAGTGACT 178
Query 196 CTGTGGAAGAAGCAATAAGAGGCGATGAGGCGAAGAAAAGTAACGGCGTCGTGAGCAAGA 255
||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| |
Sbjct 179 ATGTGGAAGAAGCAATAAGAGGTGATGCGGCGAAGAAAAGTAATGGCGTCGTGAGCAA-A 237
Query 256 GGG-GTAACGGAAAGAGTGTAGGAATTCCGACGAAGACGAGTAAAAATCGAGAAGAGGAC 314
|| ||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||
Sbjct 238 GGCCGTAACGGAAAGAGTGGAGGAGTTCCGACGAAGACGAGTAAAAATCGGGAAGAGGAC 297
Query 315 GATGGAGGCGCGGAAGATGCTAAGATC---AAGTTTCCGATGAATCGGATTCGGCGGATC 371
|| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 298 GACGGAGGTGTGGAAGATGCTAAGATGTTTAAGTTTCCGATGAATCGGATTCGGCGGATC 357
Query 372 ATGAGAAGCGATAATTCTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAA 431
||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 358 ATGAGAATCGACAATTCCGCTCCACAGATTATGCAGGATGCTGTATTTCTTGTCAACAAA 417
Query 432 GCCACG 437
||||||
Sbjct 418 GCCACG 423
Score = 348 bits (188), Expect = 5e-95
Identities = 198/203 (98%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 436 CGGAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCAAGGACAAAA 495
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 527 CGGAGATGTTCATTAAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCCAGGACAAAA 586
Query 496 AGAAATTCATCCACTACAAACACCTCTCATCCGTAGTGAGTAACGACCAGAGATACGAGT 555
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 587 AGAAATTCATCCACTATAAACACCTCTCATCCGTAGTGAGTAACGACGAGAGATACGAGT 646
Query 556 TCCTTGCAGATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAA 615
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TCCTTGCGGATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAA 706
Query 616 GAGGCATGACAGATGCAGGCTGA 638
|||||||||||||||||||||||
Sbjct 707 GAGGCATGACAGATGCAGGCTGA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37017352407
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5