BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G07985.1

Length=751
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470850 jgi|Araly1|470850|fgenesh2_kg.1__804__AT1G07985.1          809    0.0  


> Ahg470850 jgi|Araly1|470850|fgenesh2_kg.1__804__AT1G07985.1
Length=586

 Score =  809 bits (438),  Expect = 0.0
 Identities = 510/542 (94%), Gaps = 16/542 (3%)
 Strand=Plus/Plus

Query  5    CTCTATTAATAAGAGAAGACGAGTTTTGCTTTCG------ATACTGTCTTTCAACTATTC  58
            ||||||||||||||||||||||||||| ||||||      ||||||||||| ||||||||
Sbjct  1    CTCTATTAATAAGAGAAGACGAGTTTTACTTTCGATATACATACTGTCTTT-AACTATTC  59

Query  59   CGACACAACCAAAGCTTCTGGAAACGTTGTCGTTTGTTATCAATAATGGCTGTTGTAGAA  118
            ||||||||||||||||| || |||||||||||||||       |||||||||||||||||
Sbjct  60   CGACACAACCAAAGCTTGTGAAAACGTTGTCGTTTG-------TAATGGCTGTTGTAGAA  112

Query  119  GAACCGATACTTTCAAGATTGGATCGTATTGATTTCATGGTGAGGAAGTTAGAGGAGATG  178
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  113  GAACCGATACTTTCAAGATTGGATCGTATTGATTTCATGGTGAGGAAGCTAGAGGAGATG  172

Query  179  AAAGGAAGCTCGCCTAGAAGCTCGAGCCCATCGACTCCATCTAGTGGGACTCAGCCATCG  238
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  173  AAAGGAAGCTCGCCGAGAAGCTCGAGCCCATCGACTCCATCTAGTGGGACTCAGCCATCG  232

Query  239  TCAATGGATCTGTCGTCACCGAGGAGCATAGGGAAGGTACACTGCCGTTCGATGGAACAA  298
            ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  233  TCAATGGATATGTCGTCACCGAGGAGCATAGGGAAGGTACAGTGCCGTTCGATGGAACAA  292

Query  299  GTCAGGGAGGAGACTGAGCGGAAAGGAACTTTGCTAGAGAGACTTAATAATGTAGAGGAG  358
            |||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct  293  GTCATGGAGGAGACTGAGAGGAAAGGAACTTTGCTAGAAAGACTTAATAATGTAGAGGAG  352

Query  359  CAAGTGCTTAAGCTGTGTTCACAGTTTgaggaagaagttgaagaagagaggaagagagaa  418
            ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  353  CAAGTTCTTAAGCTGTGTTCACAGTTTGAGGAAGAGGTTGAAGAAGAGAGGAAGAGAGAA  412

Query  419  gataagacggataaggaaaagaagaccccgaagaagaagaag-ggattgaggaagCTGGT  477
            ||||||||||||||||| |||||||| ||||||||||||||| || ||||||||||| ||
Sbjct  413  GATAAGACGGATAAGGAGAAGAAGACGCCGAAGAAGAAGAAGAGG-TTGAGGAAGCTAGT  471

Query  478  TGATAAAGTTGTTGGATCTTCTTCTCCCACTAATATCCATTCCAAGAGCTGGCGTTGTTG  537
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  472  TGATAAAGTTGTTGGATCTTCTTCTCCGACTAATATCCATTCCAAGAGCTGGCGTTGTTG  531

Query  538  AG  539
            ||
Sbjct  532  AG  533


 Score = 82.4 bits (44),  Expect = 4e-15
 Identities = 51/54 (94%), Gaps = 2/54 (4%)
 Strand=Plus/Plus

Query  566  ATGTATACTTCAACGTACCACGTTTAAATGAAAGCTTCTCTTC-TTTTTTCTTT  618
            ||||||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct  534  ATGTATACTTCAACGTACCACGTTTAAATTAAAGCTTCTCTTCCTTTTTT-TTT  586



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27677237742


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5