BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07990.1
Length=2905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919535 jgi|Araly1|919535|scaffold_100816.1 4082 0.0
Ahg481669 jgi|Araly1|481669|fgenesh2_kg.4__729__AT2G28360.1 1598 0.0
> Ahg919535 jgi|Araly1|919535|scaffold_100816.1
Length=2461
Score = 4082 bits (2210), Expect = 0.0
Identities = 2383/2465 (97%), Gaps = 17/2465 (1%)
Strand=Plus/Plus
Query 236 CTCCACTCCTCCCTCGCCACCATGTTTTGGAAGCTCACATCTCTCTCTGCATCATCTCCT 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCCACTCCTCCCTCGCCACCATGTTTTGGAAGCTCACATCTCTCTCTGCATCATCTCCT 60
Query 296 GTGGAGATAATATTAGACAAAGAAAATTTCACGTTGGAAGAGCTTCTTGATGAGGAAGAG 355
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GTGGAGACAATATTAGACAAAGAAAATTTCACCTTGGAAGAGCTTCTTGATGAGGAAGAG 120
Query 356 ATTATTCAAGAATGCAAGGCTTTGAATAGCAGGCTCATTAACTTTCTAAGGGATAAAGCT 415
|||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 121 ATTATTCAAGAATGCAAGGCTTTGAATAGCCGGCTCATAAACTTTCTAAGGGAGAAAGCT 180
Query 416 CAAGTGGAGCAATTATTGCGGTACATTGTTGAAGAACCTCCACAGGATGCTGATAGTAAA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAGTGGAGCAATTATTGCGGTACATTGTTGAAGAACCTCCACAGGATGCTGATAGTAAA 240
Query 476 CGTGCTTTCAAGTTTCCATTCATCTCTTGTGAAATATTTACATGTGAAATTGATGTTATT 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGTGCTTTCAAGTTTCCATTCATCTCTTGTGAAATATTTACATGTGAAATTGATGTTATT 300
Query 536 CTAAAAACTTTGGTCGAGGATGAAGAGCTGATGAACTTGCTTTTTTCCTTTCTGGAACCA 595
|||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 301 CTAAAAACTTTGGTGGAGGCCGAAGAGCTGATGGACTTGCTTTTTTCCTTTCTGGAACCA 360
Query 596 AATCGTCCTCATAGTGCATTGCTGGCAGGCTATTTCAGCAAGGTTGTCATTTGCCTTATG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AATCGTCCTCATAGTGCATTGCTGGCAGGCTATTTCAGCAAGGTTGTCATTTGCCTTATG 420
Query 656 ATCAGAAAAACTGCAGCGCTTATGAATTATGTAAAAGGGCATCAAAATGTTTTCTGCCAG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATCAGAAAAACTGCAGCGCTTATGAATTATGTAAAAGGGCATCAAAATGTTTTCTGCCAG 480
Query 716 TTAGTTGATTTGATTGGGATAACATCCATCATGGAGGTTTTGGTTCGCTTGGTTGGGGCT 775
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGGTTGATTTGATTGGGATAACATCCATCATGGAGGTTTTGGTTCGCTTGGTTGGGGCT 540
Query 776 GATGACCAAGTCTATCCCAACTTTCTGGATGTGATGCAATGGTTGGCTGATAGCAATTTA 835
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATGACCATGTCTATCCCAACTTTCTGGATGTGATGCAATGGTTGGCTGATAGCAATTTA 600
Query 836 CTTGAAATGATCGTGGACAAACTTAAACCATCTAGTCCTCCGGAGGTTCAGGCAAATGCA 895
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 CTTGAAATGATCGTGGACAAACTTAAACCATCTAGTCCTCCAGAGGTTCAGGCAAATGCA 660
Query 896 GCAGAAACATTATGTGCAATTTCTCGGAATGCACCGTCAGCTTTAGCTACGCAGCTCTCT 955
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 GCAGAAACATTATGTGCAATTTCTCGGAATGCACCATCAGCTTTAGCTACGCAGCTCTCT 720
Query 956 AGCCCTGGCTACGTTGCAAAGATATTTGGTCATGCTCTTGAAGACTCGCATTCAAAATCC 1015
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGCCCTGGCTACGTTGCTAAGATATTTGGTCATGCTCTTGAAGACTCGCATTCAAAATCC 780
Query 1016 GGTCTAGTTCATTCACTTTCAGTATGCACCTCTCTTCTGGATCCGAGGAGATCTGCTGTT 1075
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 AGTCTAGTTCATTCACTTTCAGTATGCACCTCTCTGCTGGATCCGAGGAGATCTGCTGTT 840
Query 1076 TCATCTTCTATGTTCAATTCTTACAGAGGTCAACATATGTTCGAGTCTCCTGTCCCAGTT 1135
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 841 TCATCTTCTATGTTCAATTCTTATAGAGGTCAACATATGTTCGAGTCTCCTGTCCCAGTT 900
Query 1136 TCCCCAGAAACTATTGGTGCCATGCTGCCCAAACTCAATGACTTGCTTATGCTTCTCACT 1195
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCCCCGGAAACTATTGGTGCCATGCTGCCCAAACTCAATGACTTGCTTATGCTTCTCACT 960
Query 1196 GTAGCATCTGATAGCACAGTATTGCCTACAACATATGGTGAACTGAGGCCTCCTCTCGGA 1255
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTAGCATCCGACAGCACAGTATTGCCTACAACATATGGTGAACTGAGGCCTCCTCTCGGA 1020
Query 1256 AAGCATCGTCTAAAGATTGTGGAGTTCATTGCAGTTTTGTTGAAAACTAGAAGTGAAGCT 1315
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1021 AAGCATCGTCTAAAGATTGTGGAGTTCATTGCAGTTTTGTTGAAAACTGGAAGTGAAGCT 1080
Query 1316 GCACAAAAGGAATTAGTCAGTTCAGGAACAATCAAAAGGACCCTTGATCTGTTTTTCGAG 1375
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCACAAAAGGAATTAGTTAGTTCAGGAACAATCAAAAGGACCCTTGATCTGTTTTTCGAG 1140
Query 1376 TACCCGTACAATAATGCTCTGCATCATCAAGTGGAGAGTATAATACTTTCTTGTTTGGAA 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TACCCGTACAATAATGCTCTGCATCATCAAGTGGAGAGTATAATACTTTCTTGTTTGGAA 1200
Query 1436 AACAAGAGCGATTTGATGGTTAACCATATTCTTCGAGACTGCGATCTGATTGGCAAATTC 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AACAAGAGCGATTTGATGGTTAACCATATTCTTCGAGACTGCGATCTGATTGGCAAATTC 1260
Query 1496 CTCTTGTCGGACAGGGACTCAAACCTCT---T---AGGTGATAGCCAGCCCACTGTAGCT 1549
|||| ||| ||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1261 CTCTCGTCAGACCGGGACTCAAACCTCTCAGTCTCAGGTGATAGCCAGCCCACTGTAGCT 1320
Query 1550 GCCTCCGGGaaaaaaaaaCCTCGTGTCGGGTATGTCGGGCATATCACAAGAATATCAAAT 1609
||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1321 GCCTCCGGGAAAACCCCCCCTCGCGTCGGGTATGTTGGGCATATCACAAGAATATCAAAT 1380
Query 1610 AAAATTGGTCAGTTGAGTAACAGCAATGGCCAGATAAAGGCATACCTTCAGGAAAACAGC 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AAAATTGGTCAGTTGAGTAACAGCAATGGCCAGATAAAGGCATACCTTCAGGAAAACAGC 1440
Query 1670 GAATGGAATGAGTGGCAAGGTAGTGTTCTGCAGGACCGCAACACGGTTGAAAATGTCAAC 1729
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1441 GAATGGAATGAGTGGCAAGGTAGTGTTCTGCAGGAGCGCAACACGGTTGAAAATGTCAAC 1500
Query 1730 AGATGGGGATGTGGGCGCCCAACTACCCTACAAGATAGGACAAGAGATAGCGATGAGGAA 1789
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1501 AGATGGGGATGCGGGCGCCCGACTACCCTACAAGATAGGACAAGAGATAGCGATGAGGAA 1560
Query 1790 GACAGGGATTACGATGTTGCAGCTCTGGCCAATAACTTAAGCCAAGCATTTAGATACAAA 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 GACAGGGATTACGATGTTGCAGCTCTGGCCAATAACTTAAGCCAAGCATTTAGATACAAA 1620
Query 1850 ATATATGGAAACGATGACAATGAAGAGGACCACAATGCCCTTGATAGAGACGATGATGAT 1909
|| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1621 ATCTATGGAAACGAGGACAATGAAGAGGACCAAAATGCCCTGGATAGAGACGATGATGAT 1680
Query 1910 GTTTACTTCGACGATGAATCTGCTGAAGTAGTAATTTCATCCTTAAGACTTGGGGATGAC 1969
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GTTTACTTCGACGATGAATCCGCTGAAGTAGTAATTTCATCCTTAAGACTTGGGGATGAC 1740
Query 1970 CAAGGAAGCTTGTTTACAAATTCGAATTGGTTCACATTCCAAGACGATAGATTCGGCAGC 2029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 CAAGGAAGCTTGTTTACAAATTCGAATTGGTTCACATTCCAAGACGATAGATTCGGCAGC 1800
Query 2030 ACACCCTCTGACACAGCGGGTTCGAACACGATAGA---CGTGGAATTGAATAAAACCTAT 2086
|| ||||||||||||||||||||||| ||| |||| |||||||||||||||||||| |
Sbjct 1801 ACGCCCTCTGACACAGCGGGTTCGAAGACGTTAGAGGACGTGGAATTGAATAAAACCTTT 1860
Query 2087 AATGCCAACACTAGCAGTAGTGACGATGATGAAGTTGTGGTTGGAGAAGAAGACGATGAT 2146
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1861 AATGCCAACACTAGCAGTAGTGACGATGATGAGGTTGTGGTTGGAGAAGAAGACGATGAT 1920
Query 2147 CTAACTGGAAACCCAAAAGACAACGCGTTGAACACAACTGAAACCAACTTTCAAATGGAG 2206
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1921 CTAACTGGAAACCCAAAAGACAACGCATTGAACACAACTGAAACCAACTTCCAAATGGAG 1980
Query 2207 AGTCCACTGGATTTCTTCGACTTCAACACCTCACAGAAAGCTGAAGAAGCTTTTGCTGAA 2266
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1981 AGTCCACTAGATTTCTTCGACTTCAACACCTCAGAGAAAGCTGAAGAAGCTTTTGCTGAA 2040
Query 2267 CAGCCACCCGAATGGGTCGGGTGGGGAGAACCATCTGATATGCAAGCGAGTGGCACCGGT 2326
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2041 CAGCCACCCGAATGGGTCGGGTGGGGAGAACCTTCTGATATGCAAGCGAGTGGCACCGGT 2100
Query 2327 ---CTGAACCCATTTATCgatgatgatgatgatgatgaCAGCAAGCACATAATGAACCTC 2383
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 2101 GGTCTGAACCCATTTATCGATGATGATGATGATGA---CAGCAAGAACATAATGAACCTC 2157
Query 2384 GACATACCAATGGCTGAGGTCAAATCTGAATCCATGATTCCAAACGGGTCAGAAAGATCG 2443
|||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 2158 GACATACCAATGCCTGAGGTCAAAACCGAATCCATGATTCCAAACGGGTCAGAAAGATCC 2217
Query 2444 TTATTTGAGAAGGACGTGGAATTTGTGGGAGTGGAACCAGAAGGGGCAGAGAAAGCGATG 2503
|||||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||||||
Sbjct 2218 TTATTTGATAAGGACGTGGAGTTTGTGGGAGTGGAAGCAGAAGGGACAGAGAAAGCGATG 2277
Query 2504 GAGCAAGCGATGAAAGAAGGGATAGTAGGAGAAGCTGGAGTGATGAAGAAGAACAAGGAG 2563
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 2278 GAGCAAGCGATGAAAGAAGGGATAGTAGGGGAAGCTGGAGCGATGAAGAAGAACAAGGAG 2337
Query 2564 ATGGCTGAGGACTCAAAGCCGGAGGAAAGTTCAGGAGGAGTGAAAGAGTTCAACGATAAC 2623
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2338 ATGGCTGAGGACCCAAAGGCGGAGGAAAGTTCAGGAGGAGTGAAAGAGTTCAACGATAAC 2397
Query 2624 AACTACTGGAAAGTGGATCAAGAAGTTGGAGTGTTGGAATGAAAAAGTC-GTTACCTTGT 2682
|||||||||||||||||||||||||||||||| ||||| |||||||||| || |||||||
Sbjct 2398 AACTACTGGAAAGTGGATCAAGAAGTTGGAGTTTTGGAGTGAAAAAGTCAGT-ACCTTGT 2456
Query 2683 ACAGT 2687
|||||
Sbjct 2457 ACAGT 2461
> Ahg481669 jgi|Araly1|481669|fgenesh2_kg.4__729__AT2G28360.1
Length=2439
Score = 1598 bits (865), Expect = 0.0
Identities = 1557/1881 (83%), Gaps = 87/1881 (5%)
Strand=Plus/Plus
Query 305 ATATTAGACAAAGAAAATTTCACGTTGGAAGAGCTTCTTGATGAGGAAGAGATTATTCAA 364
||| |||||||||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 157 ATACTAGACAAAGACAGTTTCACTTTGGAAGAGCTTCTTGATGAGGAAGAGATTATTCAA 216
Query 365 GAATGCAAGGCTTTGAATAGCAGGCTCATTAACTTTCTAAGGGATAAAGCTCAAGTGGAG 424
|||||||| |||||||||||| | ||||| || ||||||||||||||| ||||||||||
Sbjct 217 GAATGCAAAGCTTTGAATAGCCGACTCATAAATTTTCTAAGGGATAAAACTCAAGTGGAC 276
Query 425 CAA-TTATTGCGGTACATTGTTGAAGAACCTCCAC-AGGATGCTGATAGTAAACGTGCTT 482
||| || |||||||| |||||||||| ||| | | ||||||||||| ||||||||||
Sbjct 277 CAACTT-TTGCGGTATGTTGTTGAAGAGCCTG-AGGACGATGCTGATAGCAAACGTGCTT 334
Query 483 TCAAGTTTCCATTCATCTCTTGTGAAATATTTACATGTGAAATTGATGTTATTCTAAAAA 542
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| || |
Sbjct 335 TCAAGTTTCCATTTATCTCTTGTGAGATATTTACATGTGAGATTGATGTTATTCTTAAGA 394
Query 543 CTTTGGTCGAGGATGAAGA-GCTGATGAACTTGCTTTTTTCCTTTCTGGAACCAAATCGT 601
||||||| |||||||| || ||||||| | ||||| ||| ||| ||||||| ||||||
Sbjct 395 CTTTGGTGGAGGATGA-GAAGCTGATGGATTTGCTGTTTGGATTTTTGGAACCGAATCGT 453
Query 602 CCTCATAGTGCATTGCTGGCAGGCTATTTCAGCAAGGTTGTCATTTGCCTT-ATGATCAG 660
||||||||||| |||||||||||||||||| | ||||||||||| || || ||||||||
Sbjct 454 CCTCATAGTGCGTTGCTGGCAGGCTATTTCGGAAAGGTTGTCATATGT-TTGATGATCAG 512
Query 661 AAAAACTGCAGCGCTTATGAATTATGTAAAAGGGCATCAAAATGT-TTTCTGCCAGTTAG 719
||| |||||||| |||||||| ||| ||||||||||| |||||| ||| ||||||| |
Sbjct 513 AAAGACTGCAGCACTTATGAAATATATAAAAGGGCATGGAAATGTGTTTA-GCCAGTTGG 571
Query 720 TTGATTTGATTGGGATAACATCCATCATGGAGGTTTTGGTTCGCTTGGTTGGGGCTGATG 779
||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 572 TTGATTTAATTGGAATAACATCCATCATGGAGGTTTTAGTTCGCTTGGTTGGGGCTGATG 631
Query 780 ACCAAGTCTATCCCAACTTTCTGGATGTGATGCAATGGTTGGCTGATAGCAATTTACTTG 839
| || ||||||||||| |||| ||||||||||| || ||||||||||| |||||||||
Sbjct 632 ATCATGTCTATCCCAATTTTCCGGATGTGATGCGATACTTGGCTGATAGTGATTTACTTG 691
Query 840 AAATGATCGTGGACAAACTTAAAC-CATCTAGTCCTCCGGAGGTTCAGGCAAATGCAGCA 898
||||||||||||||||||| |||| ||||||||||||| |||||||||||||| ||||||
Sbjct 692 AAATGATCGTGGACAAACT-AAACTCATCTAGTCCTCCTGAGGTTCAGGCAAACGCAGCA 750
Query 899 GAAACATTATGTGCAATTTCTCGGAATGCACCGTCAGCTTTAGCTACGCAGCTCTCTAGC 958
|||||||||||||||||| |||| |||||||| |||||| ||||||| | |||||||||
Sbjct 751 GAAACATTATGTGCAATTACTCGAAATGCACCTTCAGCTCTAGCTACAAAACTCTCTAGC 810
Query 959 CCTGGCTACGTTGCAAAGATATTTGGTCATGCTCTTGAAGACTCGCATTCAAAATCCGGT 1018
||||||| |||| | | |||||||||||||||| | ||||| || ||||||||||| ||
Sbjct 811 CCTGGCTTCGTTTCTAGGATATTTGGTCATGCTATAGAAGATTCACATTCAAAATCTGGC 870
Query 1019 CTAGTTCATTCACTTTCAGTATGCACCTCTCT-TCTGGATCCGAGGAGATCTGCTGTTTC 1077
||||||||||||||| | ||||| | |||||| | | ||||| |||||||||||||||||
Sbjct 871 CTAGTTCATTCACTTACTGTATGTATCTCTCTGT-TAGATCCAAGGAGATCTGCTGTTTC 929
Query 1078 ATCTTCTATGTTCAATTCTTACAGAGGTCAACATATGTTCGAGTCTCCTGTCCCAGTTTC 1137
||| || | |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 930 ATCGCCTTTCTTCAATTCTTTTAGAGGTCAACATATGTTTGAGTCTCCTGTCCCAGTGAG 989
Query 1138 CCCAGAA-ACTATTGGTGCCATGCTGCCCAAACTCAATGACTTGCTTATGCTTCTCACTG 1196
|| || | ||||||||||||||||| || |||||| |||| ||||| |||| |||| ||
Sbjct 990 CC-AGGAGACTATTGGTGCCATGCTACCAAAACTCGGTGACATGCTTGTGCTGCTCAGTG 1048
Query 1197 TAGCATCTGATAGCACAGTATTGCCTACAACATATGGTGAACTGAGGCCTCCTCTCGGAA 1256
|||| ||||| |||| ||| || |||||||| ||||| || |||||||| ||||| ||||
Sbjct 1049 TAGCGTCTGACAGCAAAGTCTTACCTACAACGTATGGAGAGCTGAGGCCGCCTCTTGGAA 1108
Query 1257 AGCATCGTCTA-AAGATTGTGGAGTTCATTGCAGTTTTGTTGAAAA-CTAGAAGTGAAGC 1314
||||||| || |||||||| || || ||||| || |||| |||| || ||| ||||||
Sbjct 1109 AGCATCG-CTTGAAGATTGTAGAATTTATTGCGGTGCTGTT-AAAATCTGGAAATGAAGC 1166
Query 1315 TGCACAAAAGGAATTAGTCA-GTTCAGGAACAATCAAAAGGACCCTTGATCTGTTTTTCG 1373
||| || ||||||| || | || |||||||| ||||||| |||||| || |||||||
Sbjct 1167 TGCTGGAACTGAATTAG-CAAGCTCTGGAACAATTAAAAGGATCCTTGAACTATTTTTCG 1225
Query 1374 AGTACCCGTACAATAATGCTCTGCATCATCAAGTGGAGAGTATAATACTTTCTTGTTTGG 1433
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1226 AGTACCCATACAATAATGCTCTCCATCACCAAGTGGAGAGTATAATACTTTCTTGTTTGG 1285
Query 1434 AAAACAAGAGCGAT-TTGATGGTTAACCATATTCTTCGAGACTGCGATCTGATTGGCAAA 1492
|||| |||||||| || |||||||||||||| |||| ||| ||| |||||||| |||||
Sbjct 1286 AAAATAAGAGCGAAATT-ATGGTTAACCATATCCTTCAAGAATGCAATCTGATTAGCAAA 1344
Query 1493 -TTCCTCTTG-TCGGACAGGGACTCAAACCTCT-TAGGTGATAGCCAGCCCACTGTAGCT 1549
||| | || || |||| |||||| || | | || |||| | ||| || |||| |
Sbjct 1345 ATTC-T-TTCATCAGACAAGGACTCGGTTCTTTCT-GGCGATAACTTGCCTACCGTAGTT 1401
Query 1550 GCCTCCGGGaaaaaaaaaCCTCGTGTCGGGTATGTCGGGCATATCACAAGAATATCAAAT 1609
||| | ||||||||| ||| || || || ||||| || |||||||||||| ||| |||
Sbjct 1402 GCCACTGGGAAAAAACCACCGCGGGTTGGATATGTTGGACATATCACAAGACTATGGAAT 1461
Query 1610 AAAATTGGTC-AGTTGAGTAACAGCAATGGCCAGATAAAGGCATAC-CTTCAGGAAAACA 1667
||| ||| || |||||||| | |||||| ||| |||||| ||| | ||||||||||||
Sbjct 1462 AAACTTG-TCCAGTTGAGTGATAGCAATAGCCTCATAAAGACAT-CGCTTCAGGAAAACG 1519
Query 1668 GCGAATGGAATGAGTGGCAAGGTAGTGTTCTGCAGGACCGCAACACGGTTGAAAATGTCA 1727
| |||||||| ||||||||| |||||||||| |||| ||||| || ||||| |||||
Sbjct 1520 GTGAATGGAACGAGTGGCAAAGTAGTGTTCTAAAGGAGCGCAATACTGTTGAGAATGTGT 1579
Query 1728 ACAGATGGGGATGTGGGCGCCCAACTACCCTACAAGATAGGACAAGAGATAGCGATGAGG 1787
||||||||| ||| ||||| |||||||| || |||||||| ||||| |||||||| ||||
Sbjct 1580 ACAGATGGGCATGCGGGCGTCCAACTACACTGCAAGATAGAACAAGGGATAGCGACGAGG 1639
Query 1788 AAGACAGGGATTACGATGTTGCAGCTCTGGCCAATAACTT-AAGCCAAGCATTTAGAT-A 1845
|||||||||||||||||||||||||| |||| || || || || |||||| |||| || |
Sbjct 1640 AAGACAGGGATTACGATGTTGCAGCTTTGGCGAACAATTTGAA-CCAAGCGTTTA-ATTA 1697
Query 1846 CAAAATATATGGAAACGATGACAATGAAGAGGACCACAATGCCCTTGATAGAGACGATGA 1905
|| ||| ||||||||||| || ||||||||||| || | | || | || ||||||
Sbjct 1698 CAGAATGTATGGAAACGAGGATAATGAAGAGGATG-CA-TAC--TT--T-GA--CGATGA 1748
Query 1906 TGATGTTTACTTCGACGATGAATCTGCTGAAGTAGTAATTTCATCCTTAAGACTTGGGGA 1965
|| || | | |||| | | | || | | |||||||||| ||||| || ||
Sbjct 1749 --AT-----CT--G-C--TGAA---G-T-A-GT-G-A-TTTCATCCTTGAGACTCGGAGA 1787
Query 1966 TGACCAAGGAAGCTTGTTTACAAATTCGAATTGGTTCACATTCCAAGACGATAGATTCGG 2025
||||||||||||||| | ||||||||| | ||||||||||||||||| || |||||| |
Sbjct 1788 CGACCAAGGAAGCTTGCTCACAAATTCGGACTGGTTCACATTCCAAGATGACAGATTCAG 1847
Query 2026 CAGCACACCCTCTGACAC-AGCGGGTTCGAACACGATAGA-CGTGGAATTGAATAAAACC 2083
|| ||| |||||||||| | || || ||| ||| | || | || ||| ||| || |
Sbjct 1848 CAACACGGCCTCTGACACGA-CGA-TT-GAAGACG-T-GAACATG-AAT-GAA-AACTCA 1899
Query 2084 TATAATGCCAACA-CTAGCAGTAGTGACGATGATGAAGTTGTGGTTGGAGAAGAA---GA 2139
|| || ||| | | ||||| ||||||||||| | || |||||||||||||| ||
Sbjct 1900 AATGATAACAATAGC-AGCAGCAGTGACGATGA--AC-TTCTGGTTGGAGAAGAAAAAGA 1955
Query 2140 CGATGATCTAACTG-GAAACC 2159
|||||||||||| | ||||||
Sbjct 1956 CGATGATCTAACCGAGAAACC 1976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109661815355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5