BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08010.1
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470852 jgi|Araly1|470852|fgenesh2_kg.1__806__AT1G08010.1 1476 0.0
> Ahg470852 jgi|Araly1|470852|fgenesh2_kg.1__806__AT1G08010.1
Length=1251
Score = 1476 bits (799), Expect = 0.0
Identities = 1083/1211 (89%), Gaps = 55/1211 (5%)
Strand=Plus/Plus
Query 93 ACCATCTCCAG-TTCGTCATCGTACGACGActctctctctctctctcctcttctctGTAT 151
|||| |||| | |||||||||||||||| || ||||||||||||| ||| ||| |||||
Sbjct 18 ACCAACTCC-GATTCGTCATCGTACGAC-TCTTTCTCTCTCTCTCT-CTC-TCTGTGTAT 73
Query 152 AGTC-GAA-TTATATTACAAGT-TAGATAG-ATAGCATGAATTGGTTACCTGAAGCTGAA 207
| || || | | | | | | || |||| ||||||||||| |||||||||||||||||
Sbjct 74 A-TCACAAGGT-TCGTGC-A-TCTATATAGTATAGCATGAATAGGTTACCTGAAGCTGAA 129
Query 208 GCTGAGGATG-ACTTCAAAGGTCTTCTCTCTGGTGATTTCTTTGATGATCTCATCAATCA 266
|||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 130 GCTGAGGA-GCACTTCAAAGGCCTTCTCTCTGGTGATTTCTTTGATGATCTCATCAATCA 188
Query 267 CCTTGACGT-CCCTCTTGATGACATTGATACCACCAATGGTGAAGGAGATTGGGTTGACA 325
||||||| | ||||||||| ||||| ||| ||||||||| ||| || |||||||||| ||
Sbjct 189 CCTTGAC-TGCCCTCTTGAAGACATCGATTCCACCAATGTTGAGGGTGATTGGGTTGCCA 247
Query 326 GGTTTCAAGACCTTGAGCCTCCTCCCATGGATATGTTCCCCACTTTGCCTTCTGACCTCA 385
|||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||
Sbjct 248 GGTTTCAAGACCTTGAGCCTCCCCCCATGGATATGTTTCCGAGTTTGCCTTCTGACCTCA 307
Query 386 CCTCTTGCGGCTCTGGCATGGCCAAGGCCCCTCGTGTGGATATTCAAAGGAAC---ATTC 442
|||||| || | | ||| ||| |||| ||| |||||||||||| ||||
Sbjct 308 TCTCTTG-TGC-C--AC-TGG---AGG----TCGTCTGGGGATTCAAAGGAACATGATTC 355
Query 443 CTGCTTTGAAACAGTCCTATTCTTCTGAAGCCTTGT-C--C------AGCACTCTCCACC 493
||||||| |||||||||| ||||||||||||||||| | | | |||||||||||
Sbjct 356 CTGCTTTCAAACAGTCCTGTTCTTCTGAAGCCTTGTCCGGCATTAATACCACTCTCCACC 415
Query 494 AATCTTCAGCTCCTCCTGAAATCAAAGTTTCGAAACTATTTCAGTCTTTAAGTCCAGTGT 553
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 416 AATCTTCAGCTCCTCCTGATATCAAAGTTTCCAAGCTATTTCAGTCTTTAAGTCCAGTGT 475
Query 554 CAGTTCTCGAGAACAGTTATGGTTCTCTCTCGACCCACAACAATGGATCTCAGAGATTGG 613
||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 476 CAGTTCTCGAGAACAGTTATGGTTCTCTCTCCACCCAGAACTCCGGATCTCAGAGATTGG 535
Query 614 CTTTCCCTGTGAAAGGCATGAGAAGCAAGCGCAAACGCCCCACAACACTGAGACTTAGCT 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CTTTCCCTGTGAAAGGCATGAGAAGCAAGCGCAAACGCCCCACAACACTGAGACTTAGCT 595
Query 674 ACCTTTTCCCCTCTGAACCCCGAAAGCCCGAGAAGTCAACCCCGGGCAAACCTGAATCCG 733
|||||||||||||||||||| ||||||||||||||||||| || ||| || | |||||||
Sbjct 596 ACCTTTTCCCCTCTGAACCCAGAAAGCCCGAGAAGTCAACTCCTGGCGAATCAGAATCCG 655
Query 734 AGTGTTACTTTTCTTCTGAGCAACATGCCAAGAAGAAACGCAAGATCCACCTGACCACCC 793
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AGAGTTACTATTCTTCTGAGCAACATGCCAAGAAGAAACGCAAGATCCACCTGACCACCC 715
Query 794 GCACGGTCTCTTCCACT-CTGGAGGCAAGCAACTCGGATGGGATAGTCCGCAAATGCACT 852
||||||| ||||||| | ||| |||||||||||||||||||||||||||| |||||||||
Sbjct 716 GCACGGTGTCTTCCAGTTCTG-AGGCAAGCAACTCGGATGGGATAGTCCGGAAATGCACT 774
Query 853 CATTGCGAGACAACCAAGACCCCACAGTGGAGGGAAGGACCCAGTGGACCGAA-GACCCT 911
||||| ||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||
Sbjct 775 CATTGTGAGACAACCAAGACCCCGCAGTGGAGGGAAGGACCCAAAGGAC-GAAAGACCCT 833
Query 912 CTGCAATGCTTGCGGAGTGAGGTTCAGATCTGGTCGCCTAGTTCCAGAATACCGACCAGC 971
|||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 834 CTGCAACGCTTGCGGGGTGCGGTTCAGATCTGGTCGTCTAGTTCCAGAATACCGACCAGC 893
Query 972 CTCAAGCCCCACCTTCATCCCAGCTGTGCATTCAAACTCACACAGGAAGATCATTGAGAT 1031
||||||||| |||||||||||| | ||||||||||||||||||||||||||| |||| ||
Sbjct 894 CTCAAGCCCGACCTTCATCCCATCAGTGCATTCAAACTCACACAGGAAGATCGTTGAAAT 953
Query 1032 GAGAAGGAAGGACGACGAACAGTTTGATAGCAGCATGATTCGGGCAGTGATATCCAGAGG 1091
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 954 GAGAAGGAAGGACGACGAACAGTTTGATACCAGCATGATTCGGGCAGTGATATCCAGAGG 1013
Query 1092 GTAAAGCAGttttttttttAAAGTTTGGTCTCTGATCCGCAGAAATGGGAAGTCAGTGGA 1151
||||||||||||| || ||||||||||||||||||||||||||||| |||||| |
Sbjct 1014 GTAAAGCAGTTTT------AA-GTTTGGTCTCTGATCCGCAGAAATGGGAACTCAGTGAA 1066
Query 1152 GGAAGAAGATGGTATAAAAGTAGGGTTTAGTGACTGTTTTCAAATCTGATGAAGAGAGTT 1211
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1067 GGAAGAAGATGGTATAAAAGTAGGGGTTAGTGACTGTTTTCAAATCTGATGAAGAGAGTT 1126
Query 1212 TAGTGGTTTAGTTCAAGTTAGGGATATGAAATATTTTGTTGTTTCATTATGTGTTTTTAT 1271
||| ||||||||| |||||||| |||| ||||||| ||||||| |||||||||||||||
Sbjct 1127 TAGGGGTTTAGTTGAAGTTAGGTATATTAAATATT--GTTGTTTGATTATGTGTTTTTAT 1184
Query 1272 CTT-TATCTCT 1281
||| |||||||
Sbjct 1185 CTTATATCTCT 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51993184425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5