BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08030.1
Length=1844
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334090 jgi|Araly1|334090|fgenesh1_pg.C_scaffold_1000655 1230 0.0
> Ahg334090 jgi|Araly1|334090|fgenesh1_pg.C_scaffold_1000655
Length=1536
Score = 1230 bits (666), Expect = 0.0
Identities = 742/780 (95%), Gaps = 0/780 (0%)
Strand=Plus/Plus
Query 991 CAGATTGCAGGATTGACAAATAACTCCCATTTATCAGAAGCACACGAGGTTCGGCATTGT 1050
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 757 CAGATTGCAGGATTGACAAATAACTCCCATTTATCAGAAGCACATGAGATTCGGCATTGT 816
Query 1051 GTGCAGAAATTCAAAAGCCTTGGTGAGTCTGTTCTCCAAGTTGCCAAGAGGAGGCTAGAC 1110
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 817 GTGCAGAAGTTCAAAAGCCTTGGTGAGCCTGTTCTCCAAGTTGCCAAGAGGAGGCTGGAC 876
Query 1111 AGCATGTTGTATGTTGGACTGACAGAGGAGCACAGGGAATCTGCATCACTTTTTGCCAAT 1170
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 AACATGTTGTATGTTGGACTGACAGAGGAGCACAGGGAATCTGCATCACTTTTTGCCAAT 936
Query 1171 GTAGTGGGTTCTCAAGTGCTGTCTCAAGTGGTTCCGTCCAATGCAACTGCGAAAATCAAA 1230
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 937 GTAGTGGGTTCTCAAGTGCTGTCTCAAGTGGTTCCGTCCAATAAAACTGCGAAAACCAAA 996
Query 1231 GCTCTTAAATCAGAAGCAAGTGTCACAATTTCAGAAACCGGGTCAGATAAGAGTAATATT 1290
| |||| ||||||| |||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 997 ACCCTTAGATCAGAATCAAGTGTCACGATTTCAGAATCGGGGTCAGATAAGAGTAATATT 1056
Query 1291 CAGAATGGTACATCTGAAGTTACATTGAATAAGGCAGAAGCTAAGAGTGGGAATATGACG 1350
||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||
Sbjct 1057 CAGAATGGTACATCTGAAGTTGCATTGAATAACACAGAAGCTAAGAGTGGAAATATGACG 1116
Query 1351 GTAAAAACCCTTATGGAAGTCTATGAAGGCTGCATCACTCATTTACGAAAGTCCCAAGGA 1410
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1117 GTAAAAACCCTTATGGAAGTCTATGAAGGCTGCATCACTCATTTACGGAAGTCCCAAGGA 1176
Query 1411 ACCAGACGGGTCAACTCTCTGAAGAGAATAACTCCAGCAAATTTTACAAGAGGGACGCGT 1470
|||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||
Sbjct 1177 ACCAGACGGGTCAACTCTTTGAAGAGAATATCTCCAGCAAATTTTACCAGAGGGACACGT 1236
Query 1471 ACAAGAGTTCCTAAAGAGGTCATTCAGCAGATCAAATCGCTTAACAACCTCGATGTGGAG 1530
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1237 ACAAGAGTTCCTAAAGAGGTCATTCAGCAGATCAAATCACTTAACAACCTCGATGTGGAG 1296
Query 1531 CTCTACAAATATGCAAAAGTAATCTTTGCCAAAGAACATGAATTAGTGTCGAATAAGTTG 1590
|||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 CTCTACAAGTATGCGAAAGAAATCTTTGCCAAAGAACATGAATTAGTGTCGAATAAGTTG 1356
Query 1591 ATCTCAAGTTCTAAGAGAAGCATTGTTGATCTGCCGAGTGAGTTAAAGAGCGTATTGGGA 1650
|| |||| ||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1357 ATATCAACTTCTAAGAGAAGCATTGTTGATCTGCCGAGTGAGTTAAAGAGCGTTTTCGGA 1416
Query 1651 GAAATGGGTGAAGAGAAGCTATGGAAGTTCGTACCAGTGGCATTGATGCTTTTATTGATC 1710
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1417 GAAATGGGTGAAGAGAAGCTATGGAAGTTCGTACCAGTGGCCTTGATGCTTTTATTGATC 1476
Query 1711 GTCCTCTTCTTTCTATTTGTAAACGCTAAAAGGAGAAGAACCTCCAAAGTTAAGATTTGA 1770
||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||
Sbjct 1477 TTCCTCTTCTTTCTATTTGTAAACGCTAGAAGAAGAAGAACCTCTAAAGTTAAGATTTGA 1536
Score = 1133 bits (613), Expect = 0.0
Identities = 692/730 (95%), Gaps = 6/730 (1%)
Strand=Plus/Plus
Query 268 ATGCAAATGAACT-CTGTTTGGAAGCTGTCTCTTGGGTTATTACTTCTTAGCTCAGTTAT 326
||||||||||| | || |||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 1 ATGCAAATGAA-TCCTATTTGGAGGCTGGCTCTTGGGTTATTACTTCTTGGCTCAGTTAT 59
Query 327 TGGCTCTTTTGCGGAACTTGATTTTGGCCATTGCGAAACTCTTGTGAAAAAATGGGCTGA 386
||||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||
Sbjct 60 TGGCTCTTTTGCGGAACTTGACTTTGGTCATTGCGAAAGACTTGTGAAAAGTTGGGCTGA 119
Query 387 TTCTTCTTCATCTCGTGAAGAACATGTTAATAAAGACAAACGCTCGCTTAAGGATTTGCT 446
||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 120 TTCTTCTTCATCTCGTGAAGAACATGTCAACAAAGACAAACGCTCGCTTCAGGATTTGCT 179
Query 447 CTTCTTTCTCCACGTTCCGCGAACTGGAGGCAGAACATATTTTCATTGTTTTTTGAGGAA 506
|||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 180 CTTCTTTCTCCATGTTCCCCGAACTGGAGGCAGGACATATTTTCATTGTTTCTTGAGGAA 239
Query 507 GTTGTATGATAGCTCTGAGGAATGTCCTCGATCTTACGACAAGCTCCACTTCAATCCAAG 566
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 GTTGTATGATAGCTCTGAGGAATGTCCTCGATCTTACGACAGGCTCCACTTCAATCCAAG 299
Query 567 GAAGGAAAAGTGCAAGTTGTTAGCCACACATGATGATTATAGTTTGATGGCAAAGCTTCC 626
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAAAGAAAAGTGCAAGTTGTTGGCCACACATGATGATTATAGTTTGATGGCAAAGCTTCC 359
Query 627 GAGGGAGAGAACTTCGGTGATGACAATAGTTCGGGATCCTATTGCGCGTGTGTTAAGCAC 686
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 GAGGGAGAGAACTTCGGTGATGACAATAGTTCGGGATCCTATTGCGCGAGTGTTAAGCAC 419
Query 687 TTATGAATTTTCCGTAGAGGTAGCAGCTAGGTTTTTGGTGCATCCCAATTTAACTTCTGC 746
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 TTATGAATTTTCAGTAGAGGTAGCAGCTAGGTTTCTGGTGCATCCCAATTTAACTTCTGC 479
Query 747 GTCAAGGATGTCTAGCCGCATACGCAAGAGTAATGTAATAAGCACACTAGACATATGGCC 806
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 GTCAAGGATGTCTAGCCGCATACGCAAGAGTAATGTAATAAGCACGCTAGACATATGGCC 539
Query 807 ATGGAAATACCTAGTTCCATGGATGAGAGAAGACTTGTTTGCTCGGCGAGATGCACGAAA 866
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 540 ATGGAAATACCTAGTTCCATGGATGAGAGAAGACCTGTTTGCTCGGCGAGATGCACGGAA 599
Query 867 A-TTGAAGGAG-GTAGTGATCATTGAGGACGATAACCCGTATGACATGGAGGAGATGCTT 924
| || |||| | ||||| ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 600 AGTT-AAGG-GCGTAGTTATCATAGAGGATGATAACCCATATGACATGGAGGAGATGCTT 657
Query 925 ATGCCTTTGCACAAATATCTTGATGCGCCTACTGCTCATGACATCATCCACAATGGAGCG 984
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 ATGCCTTTGCACAAATATCTTGATGCGCCTACTGCTCATGACATAATCCACAATGGAGCG 717
Query 985 ACTTTTCAGA 994
|| |||||||
Sbjct 718 ACATTTCAGA 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69248065410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5