BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G08035.1

Length=578
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919539 jgi|Araly1|919539|scaffold_100820.1                        597    3e-170


> Ahg919539 jgi|Araly1|919539|scaffold_100820.1
Length=378

 Score =  597 bits (323),  Expect = 3e-170
 Identities = 346/357 (97%), Gaps = 2/357 (1%)
 Strand=Plus/Plus

Query  223  GATATTGTGACACCATCACCATGGACTATGAAGAAAACTCCATTGAAGGAACATCAGGTT  282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  1    GATATTGTGACACCATCACCATGGACTATGAAGAAAACTCCATTGAAGGAACATCAGCTT  60

Query  283  ATGTGGAACCCATAACTCCTATGATCTCTAAAGGAGACAGTGGAATCATTGCAATTTCTC  342
            |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct  61   ATGTGGAACCCATAGCTCCTCTGATCTCTAAAGGAGACAGTGGAATCATTGCAATATCTC  120

Query  343  CACTCTGTGACCACTACAATAATCACATGAGGATTGATTCTCTTACTACTTGTTCCGATG  402
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  121  CACTCTGTGACCACTACAATGATCACATGAGGATTGATTCTCTTACTACTTGTTCCGATG  180

Query  403  AAGAAATCATTGAGTCTTTGTATCAAAACATCTTTAGTATTGTTCTCTGCCTTCAAACAG  462
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  181  AAGAAATCATCGAGTCTTTGTATCAAAACATCTTTAGTATTGTTCTCTGCCTTCAAATAG  240

Query  463  AGGAATCTGGTTATGGTTCTCACACACCTGTCTCTGCAG-CTTGCCCTGGAGCTCCCATG  521
            |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct  241  AGGAATCTGGTTGTGGTTCTCACACACCTGTCTCTGC-GCCTTGCCCTGGAGCTCCCATG  299

Query  522  AAGCTTACCAAGTTATCAAGAAACATCGATCCAGGATTCCAACGGAAACTCTTCTGA  578
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  300  AAGCTTACCAAGTTATCAAGAAACATCGATCCAGGATTCCAACGAAAACTCTTCTGA  356



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21138196306


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5