BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08040.1
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919540 jgi|Araly1|919540|scaffold_100821.1 2023 0.0
Ahg481676 jgi|Araly1|481676|fgenesh2_kg.4__736__AT2G28310.1 1177 0.0
> Ahg919540 jgi|Araly1|919540|scaffold_100821.1
Length=1203
Score = 2023 bits (1095), Expect = 0.0
Identities = 1167/1203 (97%), Gaps = 0/1203 (0%)
Strand=Plus/Plus
Query 284 TTGTTTGAGAATTGTGCAATCCGATGGGGACGATGCACCGGAGTGGTGCTCCCAGAAGGA 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGTTTGAGAATTGTGCAATCCGATGGGGACGATGCACCGGAGTGGTGCTCCCAGAAGGA 60
Query 344 CAAATGAAAATGCGAAGCTTATCATAACGACAATCGTGGGAGTGGTGTTTGGtttttttG 403
||||||||||||| ||||||||||| ||||||||||||||| |||||||||| |||||||
Sbjct 61 CAAATGAAAATGCAAAGCTTATCATTACGACAATCGTGGGAATGGTGTTTGGGTTTTTTG 120
Query 404 TTGGTATCACATTACCATTAGGTTCCTTTAGAAAGATTAGCTTACCTTCAGGCCTTATGT 463
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 121 TTGGTATCACATTACCATTAGGTGCCTTTAGAAAGATTAGCTTACCTTCAGGCCTTATAT 180
Query 464 CATCTCTTGATGTAGCCATGTCAGATGGGAAATTGTTTTCTGGTGGCAGATCACCTGAAG 523
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 CATCTCTTGATGTAGCCATGTCAGATGGGAAATTGTTTTCTGGTCGCAGATCACCTGAAG 240
Query 524 ATATTGGTTCAAGAAAGTCTCCTAAGATATATGTTCCAACCAATCCGCATGGTGCAGAAC 583
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 ATTTTGGTTCAAGAAAGTCTCCTAAGATATATGTTCCAACCAATCCGCATGGTGCAGAGC 300
Query 584 TACTTCCTCCTGGGATTATAGTGGCAGAAACAGATTTCTACTTGCGCCGATTATGGGGTG 643
||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||
Sbjct 301 TACTTCCACCTGGGATTATAGTGGCAGAAACTGATTTTTACTTGCGCAGATTATGGGGTG 360
Query 644 AACCTAGTGAAGATTTGAAGAAGAAGCCAAAGTATCTCGTAACTTTTACAGTTGGATTTG 703
|||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 361 AACCAAGTGAAGATTTGAAGAAGAAGCCAAAGTATCTCGTGACTTTTACTGTTGGATTAG 420
Query 704 AGCAGAGAAACAACATTAATGCAGCTGTTAAGAAGTTTTCTGAAGATTTCCAAATATTGT 763
||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 421 AGCAGAGGAACAACATTAATGCAGCTGTTCTGAAGTTTTCTGAAGATTTCCAAATCTTGC 480
Query 764 TATTCCATTATGATGGCCGAACAACTGAGTGGGACCAGTTTGAGTGGTCTAAAAATGCAA 823
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 481 TATTCCATTATGATGGCCGGACAACTGAGTGGGACCAGTTTGAGTGGTCAAAAAACGCAA 540
Query 824 TACATATCAGTGCAAAAAAGCAAACAAAATGGTGGTATGCAAAGAGATTTTTGCATCCTG 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TACATATCAGTGCAAAAAAGCAAACAAAATGGTGGTATGCAAAGAGATTTTTGCATCCTG 600
Query 884 ATGTTGTCTCAGCTTATGAGTATATATTTATATGGGATGAAGATCTTGGAGTCGAGCACT 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGTTGTCTCAGCTTATGAGTATATATTTATATGGGATGAAGATCTTGGAGTCGAGCACT 660
Query 944 TCAATGCAGATAGGTACGTTGAGTTAGTTAAGAAGCATGGTTTGGAGATTTCTCAACCAG 1003
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 661 TCAATGCAGATAGGTACATTGAGTTAGTCAAGAAGCATGGTTTGGAGATTTCTCAACCAG 720
Query 1004 GCTTAGAGCCAAACAACGGACTTACATGGGAAATGACAAAGAGGAGAGGTGACCGAGATG 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCTTAGAGCCAAACAACGGACTTACATGGGAAATGACAAAGAGGAGAGGTGACCGAGATG 780
Query 1064 TCCACAAAGAAACTAAGGAAAAACCAGGATGGTGCAGTGATCCACATTTACCTCCATGTG 1123
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 781 TCCACAAAGAAACTAAGGAAAAACCAGGATGGTGCAGTGATCCACATTTACCCCCATGTG 840
Query 1124 CTGCGTTTGTTGAGATTATGGCACCTGTATTTTCTAGAGAAGCATGGCGATGTGTATGGC 1183
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTGCATTTGTTGAGATTATGGCACCTGTATTTTCTAGAGAAGCATGGCGATGTGTATGGC 900
Query 1184 ATATGATTCAGAATGATCTTGTTCATGGATGGGGTCTCGATTTTGCTCTCAGACGATGCG 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATATGATTCAGAATGATCTTGTTCATGGATGGGGTCTCGATTTTGCTCTCAGACGATGCG 960
Query 1244 TTGAGCCTGCTCATGAGAAGATTGGTGTGGTAGATTCACAGTGGATTATCCATCAAGTGA 1303
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTCAGCCTGCTCATGAGAAGATTGGTGTGGTAGATTCACAGTGGATTATCCATCAAGTGA 1020
Query 1304 TTCCTTCCCTTGGAAGTCAGGGTGAGTCGGAGGAGGGGAAATCTCCATGGCAAGGGGTGA 1363
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1021 TTCCTTCCCTTGGAAGTCAGGGTGAGTCGGAGAAGGGGAAATCTCCATGGCAAGGGGTGA 1080
Query 1364 GGGAGAGATGCAGAAACGAATGGACGATGTTCCAGAATCGCGTGGCAGAAGCTGATAAAG 1423
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1081 GAGAGAGATGCAGAAACGAATGGACGATGTTCCAGAATCGCGTGGCAGAAGCAGATAAAG 1140
Query 1424 CATACATGGAACAACACAAGGTAAAAGAATAATTTGGGCCTCTTCTTACTCTGTCTCTGT 1483
|||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 1141 CATACATGGAACAACACAAGGTTAAAGAATAATTGGGGCCTCTTCTTACTATGTCTCTGT 1200
Query 1484 AAA 1486
|||
Sbjct 1201 AAA 1203
> Ahg481676 jgi|Araly1|481676|fgenesh2_kg.4__736__AT2G28310.1
Length=1402
Score = 1177 bits (637), Expect = 0.0
Identities = 966/1126 (86%), Gaps = 18/1126 (2%)
Strand=Plus/Plus
Query 307 ATGGGGACGATGCACCGGAGTGGTGCTCCCAGAAGGACAAATGAAAATGCGAAGCTTATC 366
||||| || |||||||| ||||||||||| ||||| || ||||||||||| ||| ||||
Sbjct 181 ATGGGAACAATGCACCGCAGTGGTGCTCCTAGAAGAACGAATGAAAATGCAAAGGTTATT 240
Query 367 ATAACGACAATCGT-GGGAGTGGTGTTTGGtttttttGTTGGTATCACATTACCATT-AG 424
|| || || || | |||| | |||||||| |||| |||||||||||||||| || |
Sbjct 241 ATCACTACTATTTTGGGGA-TAGTGTTTGGGACTTTTATTGGTATCACATTACC-TTCA- 297
Query 425 GTTCCTTTAGAAAGATTAGCTTACCTTCAG-GCCTTATGTCATCTCTTGATGTAGCCATG 483
|| |||| ||||||| |||||| || | ||||||| ||||||||||||||||| ||
Sbjct 298 CTTTCTTT--TAAGATTAACTTACCCTC-GCGCCTTATATCATCTCTTGATGTAGCTATA 354
Query 484 TCAGATGGGAAATTGTTTTCTGGT-G-G-CAGATCACCTGAAGATATT-GGTTCAAGAAA 539
||||||||||||||||| |||||| | | || ||| ||||||||| || |||||||||||
Sbjct 355 TCAGATGGGAAATTGTTGTCTGGTGGTGACAAATCGCCTGAAGAT-TTCGGTTCAAGAAA 413
Query 540 GTCTCCTAAGATATATGTTCCAACCAATCCGCATGGTGCAGAACTACTTCCTCCTGGGAT 599
| |||| |||||||||||||||| || |||| ||||||||||||||| || || || ||
Sbjct 414 ATTTCCTGAGATATATGTTCCAACTAACCCGCGTGGTGCAGAACTACTACCGCCAGGAAT 473
Query 600 TATAGTGGCAGAAACAGATTTCTACTTGCGCCGATTATGGGGTGAACCTAGTGAAGATTT 659
| | |||||| |||| ||||| || ||||| |||||||||| ||||||| |||||||||
Sbjct 474 TGTTGTGGCAAAAACTGATTTTTATTTGCGTAGATTATGGGGAGAACCTAATGAAGATTT 533
Query 660 GAAGAAGAAGCCAAAGTATCTCGTAACTTTTACAGTTGGATTTGAGCAGAGAAACAACAT 719
|||||||||||| |||||||| || || ||||| ||||||||||||||||| ||| | ||
Sbjct 534 GAAGAAGAAGCCGAAGTATCTTGTGACATTTACTGTTGGATTTGAGCAGAGGAACCATAT 593
Query 720 TAATGCAGCTGTTAAGAAGTTTTCTGAAGATTTCCAAATATTGTTATTCCATTATGATGG 779
||||| || |||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 594 TAATGGAGTTGTTAAGAAGTTTTCTGAAGATTTCCAAATTTTGCTCTTCCATTATGATGG 653
Query 780 CCGAACAACTGAGTGGGACCAGTTTGAGTGGTCTAAAAAT-GCAATACATATCAGTGCAA 838
||| ||||||||||||||||| ||||||||||| ||| | || || ||||| ||| | |
Sbjct 654 CCGGACAACTGAGTGGGACCAATTTGAGTGGTC-AAAGAGCGCGATTCATATTAGTACGA 712
Query 839 AAAAGCAAACAAAATGGTGGTATGCAAAGAGATTTTTGCATCCTGATGTTGTCTCAGCTT 898
||||||||||||||||||||| || ||||| ||||| |||||||||||||| |||||||
Sbjct 713 GAAAGCAAACAAAATGGTGGTACGCGAAGAGGTTTTTACATCCTGATGTTGTGTCAGCTT 772
Query 899 ATGAGTATATATTTATATGGGATGAAGATCTTGGAGTCGAGCACTTCAATGCAGATAGGT 958
| ||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||| ||
Sbjct 773 ACGAGTACATATTTATATGGGATGAAGATCTTGGAGTGGAGCATTTCAATGCGGATAAGT 832
Query 959 ACGTTGAGTTAGTTAAGAAGCATGGTTTGGAGATTTCTCAACCAGGCTTAGAGCCAAACA 1018
|| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||
Sbjct 833 ACATTGAGTTAGTTAAGAAGCATGGTTTAGAGATTTCTCAACCAGGCCTAGAGCCCAACA 892
Query 1019 ACGGACTTACATGGGAAATGACAAAGAGGAGAGGTGACCGAGATGTCCACAAAGAAACTA 1078
| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| || |
Sbjct 893 ATGGACTCACATGGGAAATGACAAAAAGGAGAGGTGACCGAGAGGTCCACAAAGATACGA 952
Query 1079 AGGAAAAACCAGGATGGTGCAGTGATCCACATTTACCTCCATGTGCTGCGTTTGTTGAGA 1138
| ||||||||||||||||| | || |||||||||||||||||||| || |||||||| |
Sbjct 953 AAGAAAAACCAGGATGGTGTAAAGACCCACATTTACCTCCATGTGCCGCATTTGTTGAAA 1012
Query 1139 TTATGGCACCTGTATTTTCTAGAGAAGCATGGCGATGTGTATGGCATATGATTCAGAATG 1198
| ||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 1013 TAATGGCGCCCGTATTTTCTCGAGAAGCATGGCGATGTGTGTGGCATATGATTCAGAACG 1072
Query 1199 ATCTTGTTCATGGATGGGGTCTCGATTTTGCTCTCAGACGATGCGTTGAGCCTGCTCATG 1258
|||| |||||||||||||||||||| ||||| || ||| |||||||||| ||||||||||
Sbjct 1073 ATCTGGTTCATGGATGGGGTCTCGACTTTGCGCTTAGAAGATGCGTTGAACCTGCTCATG 1132
Query 1259 AGAAGATTGGTGTGGTAGATTCACAGTGGATTATCCATCAAGTGATTCCTTCCCTTGGAA 1318
||||||||||||| || ||||| || ||||| || ||| ||||||| || || |||||||
Sbjct 1133 AGAAGATTGGTGTTGTGGATTCTCAATGGATAATACATAAAGTGATACCGTCACTTGGAA 1192
Query 1319 GTCAGGGTGAGTCGGAGGAGGGGAAATCTCCATGGCAAGGGGTGAGGGAGAGATGCAGAA 1378
|||| || |||| ||| | || ||| ||||||||||||| ||||| |||||||||| ||
Sbjct 1193 GTCAAGGAAAGTCAGAGAATGGAAAAGCTCCATGGCAAGGAGTGAGAGAGAGATGCA-AA 1251
Query 1379 ACG-AATGGACGATGTTCCAGAATCGCGTGGCAGAAGCTGATAAAG 1423
| | ||||||| ||||| ||||| || ||||||| || |||||||
Sbjct 1252 ATGGAATGGACAATGTTTCAGAACCGATTGGCAGATGCAGATAAAG 1297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60715850530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5