BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08065.1
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470862 jgi|Araly1|470862|fgenesh2_kg.1__816__AT1G08065.1 1469 0.0
> Ahg470862 jgi|Araly1|470862|fgenesh2_kg.1__816__AT1G08065.1
Length=1023
Score = 1469 bits (795), Expect = 0.0
Identities = 934/1000 (93%), Gaps = 14/1000 (1%)
Strand=Plus/Plus
Query 97 ATATATAGCACAAGAAAATGAAGATACCATCAATTGGCTATGTCTTTTTCCTTATCTTCA 156
||||||||||||| |||||||||||| |||||||||| | ||| |||||||||||||||
Sbjct 29 ATATATAGCACAA-AAAATGAAGATATCATCAATTGGATGCGTCGTTTTCCTTATCTTCA 87
Query 157 TCTCTATTACAATTGTTTCGAGTTCACCAGATCATGGAGAAGTTGAGGACGAAACGCAGT 216
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 88 TCTCTATTACAATTGTTTCGAGTTCACCAGATAATGGCGAAGTTGAGGACGAAACGCAGT 147
Query 217 TTAACTACGAGAAGAAAGGAGAGAAGGGGCCAGAGAACTGGGGAAGACTAAAGCCAGAGT 276
||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 148 TTAACTACGAGAAGAAAGGAGAGAAAGGGCCAGATAATTGGGGAAGACTAAAGCCAGAGT 207
Query 277 GGGCAATGTGTGGAAAAGGCAACATGCAGTCTCCGATTGATCTTACGGACAAAAGAGTCT 336
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 208 GGGCAATGTGTGGAAAAGGCAACATGCAGTCTCCGATTGATCTGACGGACAAAAGAGTCT 267
Query 337 TGATTGATCATAATCTTGGATACCTTCGTAGCCAGTATTTACCTTCAAATGCCACCATTA 396
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 268 TGATTGATCATAATCTTGGATACCTTCGTAGCCAGTATTTACCTTCAAATATCACCATAA 327
Query 397 AGAACAGAGGCCATGATATCATGATGAAATTTGAAGGAGGAAATGCAGGTTTAGGTATCA 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 AGAACAGAGGCCATGATATCATGATGAAATTTGAAGGAGGAAATGCAGGTTTAGGTATCA 387
Query 457 CTATTAATGGTACTGAATATAAACTTCAACAGATTCATTGGCACTCTCCTTCCGAACACA 516
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 388 CTATTAATGGTACTGAATATAAACTTCAACAGATTCATTGGCACTCCCCTTCTGAACACA 447
Query 517 CACTCAATGGCAAAAGGTTTGTTCTTGAGGAACACATGGTTCATCAGAGCAAAGATGGAC 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 CACTCAATGGCAAAAGGTTTGTTCTTGAGGAACACATGGTTCATCAGAGCAAAGATGGAC 507
Query 577 GCAACGCTGTTGTCGCTTTCTTTTACAAATTGGGAAAACCTGACTATTTTCTCCTCACGT 636
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 508 GCAATGCTGTAGTCGCTTTCTTTTACAAATTGGGAAAACCTGACTATTTCCTCCTTACGT 567
Query 637 TGGAAAGATACTTGAAGAGGATAACTGATACACACGAATCCCAGGAATTTGTCGAGA-TG 695
||||||||||||||| || ||||||||||||||| |||||| |||||| |||| || ||
Sbjct 568 TGGAAAGATACTTGAGGAAGATAACTGATACACATGAATCCGAGGAATACGTCG-GAATG 626
Query 696 GTTCATCCTAGAACATTCGGTTTTGAATCAAAACACTATTATAGATTTATCGGATCACTT 755
|||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||
Sbjct 627 ATTCATCCTAGAACATTCGATTTTGAATCAAGACACTATTATAGATATACCGGATCACTT 686
Query 756 ACAACTCCACCGTGTTCTGAAAATGTGATTTGGACGATTTCCAAAGAGATGAGGACTGTG 815
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 687 ACAACTCCACCGTGTTCTGAAAATGTTATTTGGACGATTTCCAAAGAGATGAGGACTGTG 746
Query 816 ACATTAAAACAATTGATCATGCTTCGAGTGACTGTACACGATCAATCTAACT-CAAATGC 874
|||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 747 ACATTAAAACAATTGATCATGCTTCGCGTGACTGTACACGATCAATCTAA-TACAAATGC 805
Query 875 TAGACCGCTTCAGCGTAAAAATGAGCGTCCGGTGGCACTTTACATACCAACATGGCATAG 934
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 806 GAGACCGCTTCAGCGTGAAAATGAGCGTCCGGTGGCACTTTACACACCAACATGGCATAT 865
Query 935 TAAACTATATTAAATATTTAAGTTTGGTTTATATTCTTTCTAGTAATCTTTGAAATATTG 994
||||| || |||||||||||||||||||| ||||| ||||| |||||||| |||||| |
Sbjct 866 TAAACCATCTTAAATATTTAAGTTTGGTTG-TATTCGTTCTAATAATCTTTCAAATATCG 924
Query 995 TAAGAGATAATGCT--T-CTAATAAATAACATTGGATTTATTGGAATTAATGTATTGA-A 1050
|||||||||| | | | || ||||||| |||||||| ||||||||||||||||||| |
Sbjct 925 TAAGAGATAA-GATAATGCTCCTAAATAATATTGGATTCATTGGAATTAATGTATTGACA 983
Query 1051 AAAACTATGCAAATACTACA---GTGTATTTTGGAACGAC 1087
||||||| |||||||||| | |||||||||||| ||||
Sbjct 984 AAAACTAAGCAAATACTATATTAGTGTATTTTGGACCGAC 1023
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 7 CATCTCCTTGAAGTTGTTTCATAAGAATA 35
|||||||||||||||||||||||||||||
Sbjct 1 CATCTCCTTGAAGTTGTTTCATAAGAATA 29
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5