BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08080.1
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334097 jgi|Araly1|334097|fgenesh1_pg.C_scaffold_1000662 1291 0.0
> Ahg334097 jgi|Araly1|334097|fgenesh1_pg.C_scaffold_1000662
Length=828
Score = 1291 bits (699), Expect = 0.0
Identities = 787/830 (95%), Gaps = 4/830 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAACTACTCATCAAT-CAGTTGCATCTTCTTTGTGGCTCTGTTTAGTATTTTCAC 59
|||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||| |
Sbjct 1 ATGGTGAACTACTCATCAATCCAG-TGCATCTTCTTTGTGGCTCTGTTCAGTATGTTCGC 59
Query 60 AATTGTTTCGATTTCGAGTGCTGCTTCAAGTCACGGAGAAGTTGAGGACGAACGCGAGTT 119
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 60 AATTGTTTCGATTTCGAGTGCTGCTTCAAGTCATGGAGAAGTTGAGGACGAACACGAGTT 119
Query 120 TAACTACAAGAAGAACGATGAGAAGGGGCCAGAGAGATGGGGAGAACTTAAACCGGAATG 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 120 TAACTACAAGAAGAACGATGAGAAGGGGCCAGAGAGATGGGGAAAACTTAAACCGGAGTG 179
Query 180 GGAAATGTGTGGAAAAGGAGAGATGCAATCTCCCATAGATCTTATGAACGAGAGAGTTAA 239
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 180 GGAAATGTGTGGAAAAGGAGAGATTCAATCTCCCATAGATCTTATGAATGAGAGAGTTAA 239
Query 240 CATTGTTTCTCATCTTGGAAGGCTTAATAGAGACTATAATCCTTCAAATGCAACTCTTAA 299
| ||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||
Sbjct 240 CGTTGTTTCTCATCTTGGAAGGCTTAATAGAGACTATAAACCTGCAAATGCCACTCTTAA 299
Query 300 GAACAGAGGCCATGACATCATGTTAAAATTTGAAGATGGAGCAGGAACTATTAAGATCAA 359
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 300 GAACAGAGGCCATGACATCATGTTAAAATTTGAAGATGGAGCCGGAAGTATTAAGATCAA 359
Query 360 TGGTTTT-GAATATGAACTTCAACAGCTTCACTGGCACTCTCCGTCTGAACATACTATTA 418
||||||| | ||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 360 TGGTTTTCG-ATATGAACTTCAACAGCTTCATTGGCACTCTCCCTCTGAGCATACTATTA 418
Query 419 ATGGAAGAAGGTTTGCACTTGAGCTGCATATGGTTCACGAAGGCAGGAATAGAAGAATGG 478
||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||
Sbjct 419 ATGGAAGAAGGTTTGCACTTGAGCTTCATATGGTTCACGAAGGCAAGAAGGGAAGAATGG 478
Query 479 CTGTTGTGACTGTGTTGTACAAGATCGGAAGAGCAGATACTTTTATCAGATCGTTGGAGA 538
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 479 CTGTTGTGACTGTGTTGTACAAGATTGGAAGAGCAGATACTTTTATCAGATCGTTGGAGA 538
Query 539 AAGAATTAGAGGGCATTGCTGAAATGGAGGAGGCTGAGAAAAATGTAGGAATGATTGATC 598
| || ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 ATGATTTAGAGGCCATTGCTGAAATGGAGGAGGCAGAGAAAAATGTAGGAATGATTGATC 598
Query 599 CCACCAAAATTAAGATCGGAAGCAGAAAATATTACAGATACACTGGTTCACTTACCACTC 658
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CCACAAAAATTAAGATCGGAAGCAGAAAATATTACAGATACACTGGTTCACTTACCACTC 658
Query 659 CTCCTTGCACTCAAAACGTTACTTGGAGCGTCGTTAGAAAGGTTAGGACCGTGACAAGAA 718
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 CTCCTTGCACTCAAAACGTTACCTGGAGCGTCGTTAGAAAGGTTAGGACCGTGACAAGAA 718
Query 719 AACAAGTGAAGCTCCTCCGCGTGGCAGTGCACGATGATGCTAATTCGAATGCGAGGCCGG 778
|||||||||| || ||||||||||| || |||||||||||| |||||||||| |||||||
Sbjct 719 AACAAGTGAAACTTCTCCGCGTGGCTGTACACGATGATGCTGATTCGAATGCCAGGCCGG 778
Query 779 TTCAACCAACCAACAAGCGCATAGTGCACTTATACAGACCAATAGTTTAA 828
| ||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 779 TCCAACCAACCAACAAGCGTATGGTGCACTTATATAGACCAATAGTTTAA 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31794512778
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5