BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08090.1
Length=1900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334098 jgi|Araly1|334098|fgenesh1_pg.C_scaffold_1000663 2499 0.0
Ahg470866 jgi|Araly1|470866|fgenesh2_kg.1__820__AT1G08100.1 1960 0.0
> Ahg334098 jgi|Araly1|334098|fgenesh1_pg.C_scaffold_1000663
Length=1593
Score = 2499 bits (1353), Expect = 0.0
Identities = 1515/1595 (95%), Gaps = 4/1595 (0%)
Strand=Plus/Plus
Query 64 ATGGGTGATTCTACTGGTGAGCCGGGGAGCTCCATGCATGGAGTCACCGGTAGAGAACAA 123
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGGTGATTCTACTGGTGAGCCGGGAAGCTCCATGCATGGAGTTACCGGTAGAGAACAG 60
Query 124 AGCTTTGCTTTCTCGGTGCAATCACCAATTGTGCATACCGACAAGACGGCCAAGTTCGAC 183
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 AGCTTTGCTTTCTCGGTGCAATCACCAATTGTGCATACCGACAAGACTGCCAAGTTCGAC 120
Query 184 CTTCCGGTGGACACAGAGCATAAGGCAACGGTTTTCAAGCTCTTCTCCTTCGCCAAACCT 243
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTCCGGTGGACACAGAGCACAAGGCAACGGTTTTCAAGCTCTTCTCCTTCGCCAAACCT 180
Query 244 CACATGAGAACGTTCCATCTCTCGTGGATCTCTTTCTCCACATGTTTTGTCTCGACTTTC 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CACATGAGAACGTTCCATCTCTCGTGGATCTCTTTCTCCACATGTTTTGTCTCGACGTTC 240
Query 304 GCAGCTGCACCACTTGTCCCTATCATCCGGGAGAATCTCAACCTCACCAAACAAGACATT 363
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCAGCTGCACCACTTGTCCCAATCATCCGGGAGAATCTCAACCTCACCAAACAAGACATC 300
Query 364 GGAAACGCCGGAGTTGCCTCTGTCTCTGGGAGTATCTTCTCTAGGCTCGTGATGGGAGCC 423
|||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 301 GGAAACGCTGGAGTTGCCTCAGTCTCGGGGAGTATCTTCTCTAGGCTGGTGATGGGAGCC 360
Query 424 GTGTGTGATCTTTTGGGTCCCCGTTACGGTTGTGCCTTCCTTGTGATGTTGTCTGCCCCA 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 GTGTGTGATCTTTTGGGTCCCCGTTACGGTTGTGCCTTCCTTGTGATGTTGTCTGCGCCA 420
Query 484 ACGGTGTTCTCCATGAGCTTCGTGAGTG-ACGCAGCAGGCTTCATAACGGTGAGGTTCAT 542
|||||||||||||||||||||||||||| | || |||||||||||||| |||||||||||
Sbjct 421 ACGGTGTTCTCCATGAGCTTCGTGAGTGGA-GCCGCAGGCTTCATAACAGTGAGGTTCAT 479
Query 543 GATTGGTTTTTGCCTGGCGACGTTTGTGTCTTGTCAATACTGGATGAGCACTATGTTCAA 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATTGGTTTTTGCCTGGCGACGTTTGTGTCTTGTCAATACTGGATGAGCACTATGTTCAA 539
Query 603 CAGTCAGATCATTGGTCTGGTGAATGGGACAGCAGCCGGATGGGGAAACATGGGTGGCGG 662
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 540 CAGTCAGATCATCGGTCTGGTGAACGGGACAGCCGCCGGATGGGGAAACATGGGTGGTGG 599
Query 663 CATAACGCAGTTGCTCATGCCCATTGTGTATGAAATCATTAGGCGCTGCGGTTCCACAGC 722
|||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 600 CATAACGCAGCTGCTCATGCCCATTGTGTATGAAATCATTAGGCGTTGCGGTTCAACAGC 659
Query 723 CTTCACGGCCTGGAGGATCGCCTTCTTTGTACCCGGTTGGTTGCACATCATCATGGGAAT 782
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 660 GTTCACGGCCTGGAGGATCGCCTTCTTTATCCCCGGTTGGTTGCACATCATCATGGGAAT 719
Query 783 CTTGGTGCTCAATCTAGGTCAAGATCTGCCAGATGGAAATCGAGCTACCTTGGAGAAAGC 842
|||||| |||| |||||||||||| |||||||||| || |||||| ||||||||||| |
Sbjct 720 CTTGGTTCTCACGCTAGGTCAAGATTTGCCAGATGGCAACCGAGCTGCCTTGGAGAAAAC 779
Query 843 GGGAGAAGTTGCCAAAGACAAATTCGGAAAGATTCTGTGGTATGCCGTTACAAACTACAG 902
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 780 GGGAGAAGTTGCCAAAGACAAATTCGGAAAGATTATGTGGTATGCCGTTACAAACTACAG 839
Query 903 GACTTGGATCTTCGTTCTTCTCTACGGATACTCCATGGGAGTTGAGTTGAGCACTGATAA 962
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 840 GACTTGGATCTTCGTTCTTCTCTATGGATACTCCATGGGAGTTGAGTTGAGCACTGACAA 899
Query 963 TGTTATCGCCGAGTACTTCTTTGACAGGTTTCACTTGAAGCTCCACACAGCAGGGCTCAT 1022
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 900 TGTTATCGCCGAGTACTTCTTTGACAGGTTTCACTTGAAGCTCCACACAGCCGGGCTCAT 959
Query 1023 AGCAGCATGTTTCGGAATGGCCAATTTCTTTGCTCGTCCAGCAGGAGGCTACGCATCTGA 1082
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 AGCAGCATGTTTCGGAATGGCCAATTTCTTTGCTCGTCCAGCAGGAGGCTACGCGTCTGA 1019
Query 1083 CTTTGCAGCCAAGTACTTCGGGATGAGAGGGAGGTTGTGGACGTTGTGGATCATACAGAC 1142
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1020 CTTTGCCGCCAAGTACTTCGGGATGAGAGGGAGGTTGTGGACGTTGTGGATCATTCAGAC 1079
Query 1143 GGCTGGTGGCCTCTTCTGTGTGTGGCTCGGCCGCGCCAACACCCTTGTAACTGCCGTTGT 1202
||||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1080 GGCTGGTGGTCTTTTCTGTGTGTGGCTCGGCCGCGCCAACACCCTCGTAACTGCTGTTGT 1139
Query 1203 GGCTATGGTGCTCTTCTCTATGGGGGCACAAGCTGCTTGCGGAGCCACCTTTGCAATTGT 1262
|||||||| ||||||||| | || || ||||| ||||||||||||||||||||||||||
Sbjct 1140 AGCTATGGTCCTCTTCTCTTTAGGAGCCCAAGCCGCTTGCGGAGCCACCTTTGCAATTGT 1199
Query 1263 GCCCTTTGTCTCCCGGCGAGCTCTAGGCATCATCTCGGGTTTAACCGGGGCTGGAGGGAA 1322
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1200 GCCTTTTGTCTCCCGGCGAGCTCTAGGCATCATCTCGGGTTTAACTGGGGCTGGAGGAAA 1259
Query 1323 CTTTGGATCAGGGCTCACACAACTCCTCTTCTTCTCGACCTCACACTTCACAACTGAACA 1382
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1260 CTTTGGATCAGGGCTCACACAACTCATCTTCTTCTCGACCTCACACTTCACAACTGAAGA 1319
Query 1383 AGGGCTAACGTGGATGGGAGTGATGATAGTCGCTTGCACGTTACCTGTGACCTTAGTTCA 1442
||||||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 1320 AGGGCTAACATGGATGGGAGTGATGATAGTCGCTTGCACGTTGCCTGTGACCTTAATCCA 1379
Query 1443 CTTTCCTCAATGGGGAAGCATGTTCTTGCCTCCTTCCACAGATCCAGTGAAAGGTACAGA 1502
||||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||| ||
Sbjct 1380 CTTTCCTCAGTGGGGAAGCATGTTCTTGCCTCCGTCCAAAGATCCAGTCAAAGGTACGGA 1439
Query 1503 GGCTCATTATTATGGTTCTGAGTGGAATGAGCAGGAGAA-GCAGAAGAACATGCATCAAG 1561
|| || || |||||||||||||||||||| || ||||| | ||| ||||||||||||||
Sbjct 1440 GGAGCACTACTATGGTTCTGAGTGGAATGAACAAGAGAAAG-AGAGGAACATGCATCAAG 1498
Query 1562 GAAGCCTCCGGTTTGCCGAGAACGCCAAGTCAGAGGGTGGACGCCGCGTCCGCTCTGCTG 1621
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1499 GAAGCCTCCGGTTTGCCGAGAACGCCAAGTCCGAGGGTGGCCGCCGCGTCCGCTCTGCTG 1558
Query 1622 CTACGCCGCCTGAGAACACACCCAACAATGTTTGA 1656
||||||| |||||||||||||||||||||| ||||
Sbjct 1559 CTACGCCACCTGAGAACACACCCAACAATGCTTGA 1593
> Ahg470866 jgi|Araly1|470866|fgenesh2_kg.1__820__AT1G08100.1
Length=1622
Score = 1960 bits (1061), Expect = 0.0
Identities = 1418/1589 (89%), Gaps = 29/1589 (2%)
Strand=Plus/Plus
Query 37 CAAAGAAACTTGAAATATTTTATAA--CAATGGGTGATTCTACTGGTGAGCCGGGGAGCT 94
||||| ||||||| | ||||| || | ||||||||||||| |||||| || || ||||
Sbjct 16 CAAAGGAACTTGATACGTTTTA-AATTC-ATGGGTGATTCTAATGGTGAACCCGGAAGCT 73
Query 95 CCATGCATGGAGTCACCGGTAGAGAACAAAGCTTTGCTTTCTCGGTGCA-AT-CACCAAT 152
||||||||||||| |||||||||||||| |||| |||||||||||| | || ||||||
Sbjct 74 CCATGCATGGAGTTACCGGTAGAGAACAGAGCTATGCTTTCTCGGT--AGATACACCAAC 131
Query 153 TGTGCATACCGACA-AGACGGCCAAGTTCGACCTTCCGGTGGACACAGAGCATAAGGCAA 211
||||| ||| ||| | | | |||| | |||| |||||||| ||||| |||||||||
Sbjct 132 TGTGCCGACCAACACA-AAGAAAAAGTACAACCTGCCGGTGGATGCAGAGGATAAGGCAA 190
Query 212 CGGTTTTCAAGCTCTTCTCCTTCGCCAAACCTCACATGAGAACGTTCCATCTCTCGTGGA 271
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 191 CGGTTTTCAAGCTCTTCTCCTTCGCAAAACCTCATATGAGAACGTTCCACCTCTCGTGGA 250
Query 272 TCTCTTTCTCCACATGTTTTGTCTCGACTTTCGCAGCTGCACCACTTGTCCCTATCATCC 331
|||||||||| |||||||| |||||||| ||||| |||||||||||| |||| ||||||
Sbjct 251 TCTCTTTCTCAACATGTTTCGTCTCGACATTCGCTGCTGCACCACTTATCCCGATCATCA 310
Query 332 GGGAGAATCTCAACCTCACCAAACAAGACATTGGAAACGCCGGAGTTGCCTCTGTCTCTG 391
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 311 GGGAGAATCTCAACCTCACCAAACAAGACATTGGAAACGCCGGAGTTGCCTCAGTCTCTG 370
Query 392 GGAGTATCTTCTCTAGGCTCGTGATGGGAGCCGTGTGTGATCTTTTGGGTCCCCGTTACG 451
||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 371 GGAGTATTTTTTCTAGGCTGGTGATGGGAGCCGTGTGTGATCTTTTGGGTCCTCGTTACG 430
Query 452 GTTGTGCCTTCCTTGTGATGTTGTCTGCCCCAACGGTGTTCTCCATGAGCTTCGTGAGT- 510
| |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||
Sbjct 431 GCTGTGCCTTCCTTGTGATGCTGTCTGCGCCAACGGTGTTCTCCATGAGTTTCGTGAGTG 490
Query 511 GACGCAGCAGGCTTCATAACGGTGAGGTTCATGATTGGTTTTTGCCTGGCGACGTTTGTG 570
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 491 GA-GCCGCAGGCTTCATAACGGTGAGGTTCATGATTGGTTTCTGCCTGGCGACGTTTGTG 549
Query 571 TCTTGTCAATACTGGATGAGCACTATGTTCAACAGTCAGATCATTGGTCTGGTGAATGGG 630
||||||||||||||||||||||||||||||| |||||||||||| |||||||| || |||
Sbjct 550 TCTTGTCAATACTGGATGAGCACTATGTTCACCAGTCAGATCATCGGTCTGGTAAACGGG 609
Query 631 ACAGCAGCCGGATGGGGAAACATGGGTGGCGGCATAACGCAGTTGCTCATGCCCATTGTG 690
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 610 ACAGCAGCCGGATGGGGAAACATGGGTGGCGGCATAACGCAGTTGCTCATGCCTATTGTG 669
Query 691 TATGAAATCATTAGGCGCTGCGGTTCCACAGCCTTCACGGCCTGGAGGATCGCCTTCTTT 750
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 670 TATGAAATCATTAGGCGTTGCGGTTCAACAGCGTTCACGGCCTGGAGGATCGCCTTCTTT 729
Query 751 GTACCCGGTTGGTTGCACATCATCATGGGAATCTTGGTGCTCAATCTAGGTCAAGATCTG 810
|| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 730 GTCCCCGGTTGGTTGCACATCATTATGGGAATCTTGGTGCTCACGCTAGGTCAAGATCTG 789
Query 811 CCAGATGGAAATCGAGCTACCTTGGAGAAAGCGGGAGAAGTTGCCAAAGACAAATTCGGA 870
|||| |||||| |||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 790 CCAGGTGGAAACCGAGCTGCCATGGAGAAATCGGGAGAAGTTGCCAAAGACAAATTCGGA 849
Query 871 AAGATTCTGTGGTATGCCGTTACAAACTACAGGACTTGGATCTTCGTTCTTCTCTACGGA 930
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||
Sbjct 850 AAGATTCTGTGGTATGCCGTTACAAATTACAGGACTTGGATTTTCGTTCTTCTGTATGGA 909
Query 931 TACTCCATGGGAGTTGAGTTGAGCACTGATAATGTTATCGCCGAGTACTTCTTTGACAGG 990
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 910 TATTCCATGGGAGTTGAGTTAAGCACTGACAATGTTATCGCCGAGTACTTCTTTGACAGG 969
Query 991 TTTCACTTGAAGCTCCACACAGCAGGGCTCATAGCAGCATGTTTCGGAATGGCCAATTTC 1050
||||||||||| || |||||||| ||| |||||||||| |||||||| ||||||||||||
Sbjct 970 TTTCACTTGAAACTTCACACAGCGGGGATCATAGCAGCGTGTTTCGGGATGGCCAATTTC 1029
Query 1051 TTTGCTCGTCCAGCAGGAGGCTACGCATCTGACTTTGCAGCCAAGTACTTCGGGATGAGA 1110
|||||||||||||||||||||| ||||||||| ||||||||| | |||||||||||||
Sbjct 1030 TTTGCTCGTCCAGCAGGAGGCTGGGCATCTGACATTGCAGCCAGGCGCTTCGGGATGAGA 1089
Query 1111 GGGAGGTTGTGGACGTTGTGGATCATACAGACGGCTGGTGGCCTCTTCTGTGTGTGGCTC 1170
|||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||
Sbjct 1090 GGGAGGTTGTGGACGTTGTGGATCATTCAGACGGCCGGTGGTCTCTTTTGTGTGTGGCTC 1149
Query 1171 GGCCGCGCCAACACCCTTGTAACTGCCGTTGTGGCTATGGTGCTCTTCTCTATGGGGGCA 1230
|| ||||||||||| || | ||||||||||| ||||||| ||||||||| | || |||
Sbjct 1150 GGTCGCGCCAACACGCTCATCACTGCCGTTGTATCTATGGTCCTCTTCTCTTTAGGAGCA 1209
Query 1231 CAAGCTGCTTGCGGAGCCACCTTTGCAATTGTGCCCTTTGTCTCCCGGCGAGCTCTAGGC 1290
||||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1210 CAAGCCGCTTGTGGAGCCACCTTTGCAATCGTGCCCTTTGTCTCCCGGAGAGCTCTAGGC 1269
Query 1291 ATCATCTCGGGTTTAACCGGGGCTGGAGGGAACTTTGGATCAGGGCTCACACAACTCCTC 1350
|| ||||| ||||||||||| |||||||| || ||||| || || |||||||||||| ||
Sbjct 1270 ATTATCTCTGGTTTAACCGGAGCTGGAGGCAATTTTGGGTCTGGACTCACACAACTCGTC 1329
Query 1351 TTCTTCTCGACCTCACACTTCACAACTGAACAAGGGCTAACGTGGATGGGAGTGATGATA 1410
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1330 TTCTTCTCGACCTCACACTTCACAACTGAAGAAGGGCTAACATGGATGGGAGTGATGATA 1389
Query 1411 GTCGCTTGCACGTTACCTGTGACCTTAGTTCACTTTCCTCAATGGGGAAGCATGTTCTTG 1470
|| ||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1390 GTTGCTTGCACGTTGCCTGTGACCTTAATCCACTTTCCTCAATGGGGAAGCATGTTCTTG 1449
Query 1471 CCTCCTTCCA-CAGATCC-AGT-GAAAGGTACAGAGGCTCATTATTATGGTTCTGAGTGG 1527
||||| |||| | ||| | | | || | || ||| | ||||||||| ||| ||||
Sbjct 1450 CCTCCCTCCAAC-GATTCGA-TCGAT-GCCACGGAG-C--ATTATTATGTTTCCGAGTAT 1503
Query 1528 AATGAGCAGGAGAAGCAGAA-GAACATGCATC-AAGGAAGCCTCCGGTTTGCCGAGA-AC 1584
||| |||||||| ||||| | | ||||||| || |||| || |||||| ||| |
Sbjct 1504 AATAAGCAGGAGCAGCAGGATGG-CATGCATTTAAA-AAGCATCAAGTTTGCTGAGGGA- 1560
Query 1585 GCCAAGTCAGAGGGTGGACGCC-GCGTCC 1612
|||| | | ||||| || | || ||||||
Sbjct 1561 GCCAGGACCGAGGGCGGCC-CCAGCGTCC 1588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71381119130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5