BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08100.1
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470866 jgi|Araly1|470866|fgenesh2_kg.1__820__AT1G08100.1 2370 0.0
Ahg334098 jgi|Araly1|334098|fgenesh1_pg.C_scaffold_1000663 1977 0.0
> Ahg470866 jgi|Araly1|470866|fgenesh2_kg.1__820__AT1G08100.1
Length=1622
Score = 2370 bits (1283), Expect = 0.0
Identities = 1514/1626 (93%), Gaps = 14/1626 (1%)
Strand=Plus/Plus
Query 1 AAACTTGAATTTTCTCAAAGGAACTTGATACGTTTAAAATACAT-GG-G-TTCTACTGAT 57
||||||||| ||||||||||||||||||||||||| |||| ||| || | ||||| || |
Sbjct 1 AAACTTGAAATTTCTCAAAGGAACTTGATACGTTTTAAATTCATGGGTGATTCTAATGGT 60
Query 58 GAGCCCGGAAGTTCCATGCATGGAGTTACCGGTAGAGAACAGAGCTATGCTTTCTCGGTA 117
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAACCCGGAAGCTCCATGCATGGAGTTACCGGTAGAGAACAGAGCTATGCTTTCTCGGTA 120
Query 118 GAT---GGTAGTGAGCCGACCAACACAAAGAAAAAGTACAATCTGCCGGTGGACGCGGAG 174
||| | || ||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 121 GATACACCAACTGTGCCGACCAACACAAAGAAAAAGTACAACCTGCCGGTGGATGCAGAG 180
Query 175 GATAAGGCAACGGTTTTCAAGCTCTTCTCCTTCGCCAAACCTCACATGAGAACGTTCCAC 234
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 181 GATAAGGCAACGGTTTTCAAGCTCTTCTCCTTCGCAAAACCTCATATGAGAACGTTCCAC 240
Query 235 CTCTCGTGGATCTCTTTCTCCACATGTTTTGTTTCGACGTTCGCAGCTGCACCACTTATC 294
|||||||||||||||||||| |||||||| || ||||| ||||| |||||||||||||||
Sbjct 241 CTCTCGTGGATCTCTTTCTCAACATGTTTCGTCTCGACATTCGCTGCTGCACCACTTATC 300
Query 295 CCGATCATCAGGGAGAATCTTAACCTCACCAAACATGACATTGGAAACGCTGGAGTTGCC 354
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 301 CCGATCATCAGGGAGAATCTCAACCTCACCAAACAAGACATTGGAAACGCCGGAGTTGCC 360
Query 355 TCCGTCTCGGGGAGTATCTTCTCTAGGCTCGTGATGGGAGCCGTGTGTGATCTTTTGGGT 414
|| ||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 361 TCAGTCTCTGGGAGTATTTTTTCTAGGCTGGTGATGGGAGCCGTGTGTGATCTTTTGGGT 420
Query 415 CCTCGTTACGGTTGTGCCTTCCTTGTGATGTTGTCTGCCCCAACGGTGTTCTCCATGAGC 474
||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 421 CCTCGTTACGGCTGTGCCTTCCTTGTGATGCTGTCTGCGCCAACGGTGTTCTCCATGAGT 480
Query 475 TTCGTGAGT-GACGCAGCAGGCTTCATAACGGTGAGGTTCATGATTGGTTTTTGCCTGGC 533
||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 TTCGTGAGTGGA-GCCGCAGGCTTCATAACGGTGAGGTTCATGATTGGTTTCTGCCTGGC 539
Query 534 GACGTTTGTGTCTTGTCAATACTGGATGAGCACTATGTTCAACAGTCAGATCATCGGTCT 593
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 540 GACGTTTGTGTCTTGTCAATACTGGATGAGCACTATGTTCACCAGTCAGATCATCGGTCT 599
Query 594 GGTGAACGGGACAGCAGCCGGATGGGGAAACATGGGTGGCGGCATAACGCAGTTGCTCAT 653
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGTAAACGGGACAGCAGCCGGATGGGGAAACATGGGTGGCGGCATAACGCAGTTGCTCAT 659
Query 654 GCCCATTGTGTATGAAATCATTAGGCGCTGCGGATCAACAGCGTTCACGGCCTGGAGGAT 713
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 660 GCCTATTGTGTATGAAATCATTAGGCGTTGCGGTTCAACAGCGTTCACGGCCTGGAGGAT 719
Query 714 CGCCTTCTTTGTCCCCGGTTGGTTGCACATCATCATGGGAATCTTGGTGCTCACGCTAGG 773
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 CGCCTTCTTTGTCCCCGGTTGGTTGCACATCATTATGGGAATCTTGGTGCTCACGCTAGG 779
Query 774 TCAAGATCTGCCAGGTGGAAACAGAGCTGCCATGGAGAAAGCGGGAGAAGTTGCCAAAGA 833
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 780 TCAAGATCTGCCAGGTGGAAACCGAGCTGCCATGGAGAAATCGGGAGAAGTTGCCAAAGA 839
Query 834 CAAATTCGGAAAGATTCTATGGTACGCCGTTACAAATTACAGGACTTGGATTTTCGTTCT 893
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 CAAATTCGGAAAGATTCTGTGGTATGCCGTTACAAATTACAGGACTTGGATTTTCGTTCT 899
Query 894 TCTGTATGGATATTCCATGGGAGTTGAGTTAAGCACAGACAATGTTATCGCCGAGTACTT 953
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 TCTGTATGGATATTCCATGGGAGTTGAGTTAAGCACTGACAATGTTATCGCCGAGTACTT 959
Query 954 CTTTGATAGGTTTCACTTGAAGCTTCACACAGCGGGGATTATAGCAGCATGTTTCGGAAT 1013
|||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| ||
Sbjct 960 CTTTGACAGGTTTCACTTGAAACTTCACACAGCGGGGATCATAGCAGCGTGTTTCGGGAT 1019
Query 1014 GGCCAATTTCTTTGCTCGTCCAGCAGGAGGCTGGGCATCTGACATTGCAGCCAAGCGCTT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1020 GGCCAATTTCTTTGCTCGTCCAGCAGGAGGCTGGGCATCTGACATTGCAGCCAGGCGCTT 1079
Query 1074 CGGAATGCGAGGGAGGTTGTGGACTTTGTGGATCATTCAGACGTCCGGTGGTCTCTTTTG 1133
||| ||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1080 CGGGATGAGAGGGAGGTTGTGGACGTTGTGGATCATTCAGACGGCCGGTGGTCTCTTTTG 1139
Query 1134 TGTGTGGCTCGGACGTGCCAACACCCTCGTCACTGCCGTTGTATCTATGGTCCTCTTCTC 1193
|||||||||||| || |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1140 TGTGTGGCTCGGTCGCGCCAACACGCTCATCACTGCCGTTGTATCTATGGTCCTCTTCTC 1199
Query 1194 TTTAGGAGCACAAGCCGCTTGCGGAGCCACCTTTGCTATCGTGCCCTTTGTCTCCCGGCG 1253
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 1200 TTTAGGAGCACAAGCCGCTTGTGGAGCCACCTTTGCAATCGTGCCCTTTGTCTCCCGGAG 1259
Query 1254 AGCTCTAGGCATTATCTCGGGTTTAACCGGGGCTGGAGGGAACTTTGGGTCAGGACTCAC 1313
|||||||||||||||||| ||||||||||| |||||||| || |||||||| ||||||||
Sbjct 1260 AGCTCTAGGCATTATCTCTGGTTTAACCGGAGCTGGAGGCAATTTTGGGTCTGGACTCAC 1319
Query 1314 ACAGCTCGTCTTTTTCTCGACTTCGCGCTTCACAACTGAAGAAGGGCTAACGTGGATGGG 1373
||| |||||||| |||||||| || | |||||||||||||||||||||||| ||||||||
Sbjct 1320 ACAACTCGTCTTCTTCTCGACCTCACACTTCACAACTGAAGAAGGGCTAACATGGATGGG 1379
Query 1374 AGTGATGATAGTTGCTTGCACGTTGCCTGTTACCTTAATCCACTTTCCTCAGTGGGGAAG 1433
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1380 AGTGATGATAGTTGCTTGCACGTTGCCTGTGACCTTAATCCACTTTCCTCAATGGGGAAG 1439
Query 1434 CATGTTCTTCCCTCCTTCCAACGATTCGGTCGACGCTACGGAGCACTATTATGTTGGCGA 1493
||||||||| ||||| |||||||||||| |||| || |||||||| ||||||||| |||
Sbjct 1440 CATGTTCTTGCCTCCCTCCAACGATTCGATCGATGCCACGGAGCATTATTATGTTTCCGA 1499
Query 1494 ATATAGTAAGGAGGAGCAGCAG-ATTGGCATGCATTTAAAAAGCA--AACTGTTTGCTGA 1550
|||| |||| ||||||||||| || ||||||||||||||||||| || |||||||||
Sbjct 1500 GTATAATAAGCAGGAGCAGCAGGAT-GGCATGCATTTAAAAAGCATCAA--GTTTGCTGA 1556
Query 1551 TGGAGCCAAGACCGAGGGAGGCAGCAGCGTCCACAAAGGGAACGCAACCAACAATGCTTG 1610
||||||| ||||||||| ||| |||||||||||| |||||| |||||||||||||
Sbjct 1557 GGGAGCCAGGACCGAGGGCGGCCCCAGCGTCCACAATGGGAACATTTCCAACAATGCTTG 1616
Query 1611 ATCATG 1616
||||||
Sbjct 1617 ATCATG 1622
> Ahg334098 jgi|Araly1|334098|fgenesh1_pg.C_scaffold_1000663
Length=1593
Score = 1977 bits (1070), Expect = 0.0
Identities = 1316/1436 (92%), Gaps = 11/1436 (1%)
Strand=Plus/Plus
Query 48 TTCTACTGATGAGCCCGGAAGTTCCATGCATGGAGTTACCGGTAGAGAACAGAGCTATGC 107
|||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 9 TTCTACTGGTGAGCCGGGAAGCTCCATGCATGGAGTTACCGGTAGAGAACAGAGCTTTGC 68
Query 108 TTTCTCGGTAG--AT--GGTAGTGAGCCGACCAAC-ACAAAGAAAAAGTACAATCTGCCG 162
||||||||| | || | || || ||| || | | | |||| | | || |||
Sbjct 69 TTTCTCGGT-GCAATCACCAATTGTGCATACCGACAAGACTG-CCAAGTTCGACCTTCCG 126
Query 163 GTGGACGCGGAGGATAAGGCAACGGTTTTCAAGCTCTTCTCCTTCGCCAAACCTCACATG 222
|||||| | ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 GTGGACACAGAGCACAAGGCAACGGTTTTCAAGCTCTTCTCCTTCGCCAAACCTCACATG 186
Query 223 AGAACGTTCCACCTCTCGTGGATCTCTTTCTCCACATGTTTTGTTTCGACGTTCGCAGCT 282
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 187 AGAACGTTCCATCTCTCGTGGATCTCTTTCTCCACATGTTTTGTCTCGACGTTCGCAGCT 246
Query 283 GCACCACTTATCCCGATCATCAGGGAGAATCTTAACCTCACCAAACATGACATTGGAAAC 342
||||||||| |||| |||||| |||||||||| |||||||||||||| ||||| ||||||
Sbjct 247 GCACCACTTGTCCCAATCATCCGGGAGAATCTCAACCTCACCAAACAAGACATCGGAAAC 306
Query 343 GCTGGAGTTGCCTCCGTCTCGGGGAGTATCTTCTCTAGGCTCGTGATGGGAGCCGTGTGT 402
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 307 GCTGGAGTTGCCTCAGTCTCGGGGAGTATCTTCTCTAGGCTGGTGATGGGAGCCGTGTGT 366
Query 403 GATCTTTTGGGTCCTCGTTACGGTTGTGCCTTCCTTGTGATGTTGTCTGCCCCAACGGTG 462
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 367 GATCTTTTGGGTCCCCGTTACGGTTGTGCCTTCCTTGTGATGTTGTCTGCGCCAACGGTG 426
Query 463 TTCTCCATGAGCTTCGTGAGT-GACGCAGCAGGCTTCATAACGGTGAGGTTCATGATTGG 521
||||||||||||||||||||| || || |||||||||||||| |||||||||||||||||
Sbjct 427 TTCTCCATGAGCTTCGTGAGTGGA-GCCGCAGGCTTCATAACAGTGAGGTTCATGATTGG 485
Query 522 TTTTTGCCTGGCGACGTTTGTGTCTTGTCAATACTGGATGAGCACTATGTTCAACAGTCA 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TTTTTGCCTGGCGACGTTTGTGTCTTGTCAATACTGGATGAGCACTATGTTCAACAGTCA 545
Query 582 GATCATCGGTCTGGTGAACGGGACAGCAGCCGGATGGGGAAACATGGGTGGCGGCATAAC 641
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 546 GATCATCGGTCTGGTGAACGGGACAGCCGCCGGATGGGGAAACATGGGTGGTGGCATAAC 605
Query 642 GCAGTTGCTCATGCCCATTGTGTATGAAATCATTAGGCGCTGCGGATCAACAGCGTTCAC 701
|||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 606 GCAGCTGCTCATGCCCATTGTGTATGAAATCATTAGGCGTTGCGGTTCAACAGCGTTCAC 665
Query 702 GGCCTGGAGGATCGCCTTCTTTGTCCCCGGTTGGTTGCACATCATCATGGGAATCTTGGT 761
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 666 GGCCTGGAGGATCGCCTTCTTTATCCCCGGTTGGTTGCACATCATCATGGGAATCTTGGT 725
Query 762 GCTCACGCTAGGTCAAGATCTGCCAGGTGGAAACAGAGCTGCCATGGAGAAAGCGGGAGA 821
|||||||||||||||||| |||||| ||| ||| |||||||| |||||||| |||||||
Sbjct 726 TCTCACGCTAGGTCAAGATTTGCCAGATGGCAACCGAGCTGCCTTGGAGAAAACGGGAGA 785
Query 822 AGTTGCCAAAGACAAATTCGGAAAGATTCTATGGTACGCCGTTACAAATTACAGGACTTG 881
|||||||||||||||||||||||||||| | ||||| ||||||||||| |||||||||||
Sbjct 786 AGTTGCCAAAGACAAATTCGGAAAGATTATGTGGTATGCCGTTACAAACTACAGGACTTG 845
Query 882 GATTTTCGTTCTTCTGTATGGATATTCCATGGGAGTTGAGTTAAGCACAGACAATGTTAT 941
||| ||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 846 GATCTTCGTTCTTCTCTATGGATACTCCATGGGAGTTGAGTTGAGCACTGACAATGTTAT 905
Query 942 CGCCGAGTACTTCTTTGATAGGTTTCACTTGAAGCTTCACACAGCGGGGATTATAGCAGC 1001
|||||||||||||||||| ||||||||||||||||| |||||||| ||| | ||||||||
Sbjct 906 CGCCGAGTACTTCTTTGACAGGTTTCACTTGAAGCTCCACACAGCCGGGCTCATAGCAGC 965
Query 1002 ATGTTTCGGAATGGCCAATTTCTTTGCTCGTCCAGCAGGAGGCTGGGCATCTGACATTGC 1061
|||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 966 ATGTTTCGGAATGGCCAATTTCTTTGCTCGTCCAGCAGGAGGCTACGCGTCTGACTTTGC 1025
Query 1062 AGCCAAGCGCTTCGGAATGCGAGGGAGGTTGTGGACTTTGTGGATCATTCAGACGTCCGG 1121
|||||| |||||| ||| |||||||||||||||| |||||||||||||||||| | ||
Sbjct 1026 CGCCAAGTACTTCGGGATGAGAGGGAGGTTGTGGACGTTGTGGATCATTCAGACGGCTGG 1085
Query 1122 TGGTCTCTTT-TGTGTGTGGCTCGGACGTGCCAACACCCTCGTCACTGCCGTTGTATCTA 1180
|||||| ||| |||||||||||||| || |||||||||||||| ||||| |||||| |||
Sbjct 1086 TGGTCT-TTTCTGTGTGTGGCTCGGCCGCGCCAACACCCTCGTAACTGCTGTTGTAGCTA 1144
Query 1181 TGGTCCTCTTCTCTTTAGGAGCACAAGCCGCTTGCGGAGCCACCTTTGCTATCGTGCCCT 1240
|||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |
Sbjct 1145 TGGTCCTCTTCTCTTTAGGAGCCCAAGCCGCTTGCGGAGCCACCTTTGCAATTGTGCCTT 1204
Query 1241 TTGTCTCCCGGCGAGCTCTAGGCATTATCTCGGGTTTAACCGGGGCTGGAGGGAACTTTG 1300
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 1205 TTGTCTCCCGGCGAGCTCTAGGCATCATCTCGGGTTTAACTGGGGCTGGAGGAAACTTTG 1264
Query 1301 GGTCAGGACTCACACAGCTCGTCTTTTTCTCGACTTCGCGCTTCACAACTGAAGAAGGGC 1360
| ||||| |||||||| ||| |||| |||||||| || | ||||||||||||||||||||
Sbjct 1265 GATCAGGGCTCACACAACTCATCTTCTTCTCGACCTCACACTTCACAACTGAAGAAGGGC 1324
Query 1361 TAACGTGGATGGGAGTGATGATAGTTGCTTGCACGTTGCCTGTTACCTTAATCCACTTTC 1420
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1325 TAACATGGATGGGAGTGATGATAGTCGCTTGCACGTTGCCTGTGACCTTAATCCACTTTC 1384
Query 1421 CTCAGTGGGGAAGCATGTTCTTCCCTCCTTCCAACGATTCGGTCGACGCTACGGAG 1476
|||||||||||||||||||||| ||||| ||||| ||| | ||| | | |||||||
Sbjct 1385 CTCAGTGGGGAAGCATGTTCTTGCCTCCGTCCAAAGATCCAGTCAAAGGTACGGAG 1440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64105882335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5