BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08110.4
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334100 jgi|Araly1|334100|fgenesh1_pg.C_scaffold_1000665 1164 0.0
> Ahg334100 jgi|Araly1|334100|fgenesh1_pg.C_scaffold_1000665
Length=708
Score = 1164 bits (630), Expect = 0.0
Identities = 682/708 (96%), Gaps = 0/708 (0%)
Strand=Plus/Plus
Query 94 ATGAGTTCGTACTCAATAGCAAGTGCTATATCTCGCATATCACCTCTAATTCGTTTCGTT 153
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTCGTACTCAATAGCAATTGCTATATCTCGCATATCACCTCTAATTCGTTTCGTT 60
Query 154 AAACCTTATTCCACCGGTTTTTCTTTCATCACTTGCGCTTGCAACAGTACCCGGAGGCCA 213
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 AAACCTTATTCCACCGGTTTTTCTTTCATCACTTGCCCTTGCAACAGTACCCGGAGGCCA 120
Query 214 AAGAGATTTGATCAGCTTTGTGTGTTTTCCATGGCGTCGGAAGCGAGGGAATCACCAGCA 273
|||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||||
Sbjct 121 AAGAGATTTGATCAGCTTCGTGTGTTCTCGATGGCATCGGAAGCGAGGGAATCACCAGCT 180
Query 274 AACAATCCTGGCTTGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAG 333
||||||||||||||||||||| | | |||||||||||||||||||| |||||||| |||
Sbjct 181 AACAATCCTGGCTTGTCAACGGTTAGGGATGAGGCTACAAAAGGATATATCATGCAGCAG 240
Query 334 ACTATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTGCTGGGG 393
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 ACTATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGCGTGCTGGGG 300
Query 394 ATGTCATTGCTGAAGAGGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGC 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGTCATTGCTGAAGAGGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGC 360
Query 454 TACGAGGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTTGGT 513
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 361 TACGAGGATACTACAACAGCTCCAGCCGATCCAACAGAGAGAACGGTTTGGACCTTTGGT 420
Query 514 CAACCGGCAACAATTGAATTGACTCACAACTGGGGTACAGAGAGTGATCCTGAGTTTAAA 573
| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 421 CGACCGGCAACGATTGAATTGACTCACAACTGGGGTACGGAGAGTGATCCTAAGTTTAAA 480
Query 574 GGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTGGGCACATTGGGGTTACCGTTGAT 633
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 GGATATCACAATGGGAACTCTGAGCCTTGTGGATTTGGGCACATTGGGGTTACCGTTGAT 540
Query 634 GATGTGCACAAGGCATGCGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCA 693
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 GATGTGCACAAGGCATGCGAGAGATTTGAAGAATTGGGAGTAGAGTTTGTCAAGAAACCA 600
Query 694 AACGATGGAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCGAG 753
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 AACGATGGAAAGATGAAGAATATAGCTTTCATTAAGGATCCTGATGGCTACTGGATCGAG 660
Query 754 ATCTTTGATCTCAAGACTATCGGAACTACTACCGTAAACGCAGCTTGA 801
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 ATCTTTGATCTCAAGACTATCGGGACTACTACCGTAAACGCAGCTTGA 708
Score = 76.8 bits (41), Expect = 3e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 838 TTGATCTCAAGACTATCGGGACTACTACCGGAAACGCAGCTTGA 881
|||||||||||||||||||||||||||||| |||||||||||||
Sbjct 665 TTGATCTCAAGACTATCGGGACTACTACCGTAAACGCAGCTTGA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41058381609
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5