BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08125.2
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919552 jgi|Araly1|919552|scaffold_100833.1 1478 0.0
> Ahg919552 jgi|Araly1|919552|scaffold_100833.1
Length=1014
Score = 1478 bits (800), Expect = 0.0
Identities = 884/925 (96%), Gaps = 3/925 (0%)
Strand=Plus/Plus
Query 235 CAGGTTAAATTCTCCAAGCACCTGTACTGTTACCATTGAGGTTTTGGGGCACGAATTAGA 294
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
Sbjct 37 CAGGTTAAATTCTCCAACCACCTGTACTGTCACCATTGAGGTTTTGGGGCACGAATTAAA 96
Query 295 CTTTGCTCAGGATCCAAATTCGAAGCATTTAGGAACGACCGTGTGGGATGCGTCCATGGT 354
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 97 CTTTGCTCAGGATCCTAATTCGAAGCATTTAGGAACAACCGTGTGGGATGCGTCCATGGT 156
Query 355 GTTTGCCAAATATCTGGGGAAAAATAGCAGGAAGGGAAGGTTTAGTTCATCTAAACTGAA 414
||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 157 GTTTGCCAAGTATCTGGGGAAAAATTGCAGGAAGGGAAGGTTTAGTCCATCTAAACTGAA 216
Query 415 AGGGAAACGTGCTATTGAACTAGGAGCAGGTTGTGGCGTTGCAGGATTTGCTTTGGCGAT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 AGGGAAACGTGCTATTGAACTAGGAGCAGGTTGTGGCGTTGCAGGATTTGCTTTGGCGAT 276
Query 475 GCTGGGGTGTGATGTGGTTACAACTGACCAAAAGGAGGTATTACCACTGCTAAAGAGGAA 534
|||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 277 GCTGGGGTGTGACGTGGTTACAACTGACCAAAGGGAGGTATTACCACTACTAAAGAGGAA 336
Query 535 TGTAGAATGGAATACGTCCAGAATCGTACAGATGAATCCTGGTTCAGCAT--TT-GGATC 591
|||||||||||||||||||| |||| | ||||||| |||||||||||||| || |||||
Sbjct 337 TGTAGAATGGAATACGTCCACAATCTTGCAGATGACTCCTGGTTCAGCATCATTTGGATC 396
Query 592 GCTCCGGGTTGCAGAACTCGACTGGGGAAACGAAGATCATATAACGGCCGTTGAGCCTCC 651
|||||| ||||||||||| ||||||||||| ||||||||||||| |||||||| ||| ||
Sbjct 397 GCTCCGAGTTGCAGAACTTGACTGGGGAAATGAAGATCATATAAGGGCCGTTGGGCCGCC 456
Query 652 CTTTGACTATGTCATCGGTACTGATGTTGTATATTCTGAGCAGCTTCTGGAACCGCTATT 711
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 457 CTTTGACTATGTCATCGGTACTGATGTTGTATATTCTGAGCAGCTTCTGGAACCTCTATT 516
Query 712 GCGTACGATACTTGCATTATCAGGGCCAAAGACAACAGTTATGTTGGGATATGAGATACG 771
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 517 GCGTACGATACTTGCGCTATCAGGGCCAAAGACAATAGTTATGTTGGGATATGAGATACG 576
Query 772 TTCGACGGTTGTTCATGAGAAAATGCTTCAGATGTGGAAAGACAACTTTGAAGTCAAAAC 831
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 577 TTCGACTGTTGTTCATGATAAAATGCTTCAGATGTGGAAAGACAACTTTGAAGTCAAAAC 636
Query 832 CATACCGAGATCCAAGATGGATGGTGAATACCAAGACCCGAGCATTCATCTGTACATCAT 891
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 CATACCGAGGTCCAAGATGGATGGTGAATACCAAGACCCGAGCATTCATCTGTACATCAT 696
Query 892 GGCACAGAAATCTGCTGCCGAGAGCTCTGGAAACGTAAGCCGAGATGAAGTTGTTATAGA 951
||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 697 GGCACAGAAATCTCCTGCCGAGAGCTCTGGAAACGTGAGCCGAGATGAAGTTATTATTGA 756
Query 952 CACAGACGAAACAAAGTGTGAGACGAAAGTCCCAACCGGAGAATGCCATAAGAGGGTGGA 1011
|||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 757 CACAGAAGAAACAAAGTGTGAGACGAAAGTCCCAACTGGAGAATGCCAGAACAGGGTGGA 816
Query 1012 AGAGGAAGCTGTTGTTACACATGGTCCTCGTCTTAATGAAGATAGTTTGTTGATGAGACT 1071
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 817 AGAGGAAGCTGTTGTTACACATGGTCCTCGTCTAAATGAAGATAGTTTGTTGATGAGACT 876
Query 1072 ACGGGATGGAAAGCTAAGTGAATGGGAGATGAGAAGGTATGGTACAGTTGCTGCACAGCT 1131
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 ACGGGACGGAAAGCTAAGTGAATGGGAGATGAGAAGGTATGGTACAGTTGCTGCACAGCT 936
Query 1132 TCTCCGTGACGTTAAGATAGATGTT 1156
|||||||||||||||||||||||||
Sbjct 937 TCTCCGTGACGTTAAGATAGATGTT 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48797333760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5