BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08130.1
Length=2715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919553 jgi|Araly1|919553|scaffold_100834.1 3843 0.0
Ahg337048 jgi|Araly1|337048|fgenesh1_pg.C_scaffold_1003613 902 0.0
> Ahg919553 jgi|Araly1|919553|scaffold_100834.1
Length=2422
Score = 3843 bits (2081), Expect = 0.0
Identities = 2311/2423 (95%), Gaps = 11/2423 (0%)
Strand=Plus/Plus
Query 112 CCTAATTTCAAAATCGACTGATGTTAGCGATTCGATCGTCGAATTACCTCCGATGCATAC 171
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCTAATCTCAAAATCGACTGATGTTAGCGATTCGATCGTCGAATTACCTCCGATGCATAC 60
Query 172 CTTCTCTCTGTACTAAAACCCAAATCTCTCAATTCTCCTCCGTGTTAATCTCTTTTAGCC 231
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CTTCTCTCTGTACTAAAACCCAAATCTCTCAATTCTCCTCCGTGTTACTCTCTTTTAGCC 120
Query 232 GCCAAATTTCCCACTTGCGTCTTAGCTCGTGCCATAGAGCCATGTCTTCTTCCCGCCCTT 291
||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 121 GCCAAGTTTCCCACTTGCGCCTTACCTCGTGCCATAGAGCCATGTCTTCTTCCCGCCCTT 180
Query 292 CTGCATTTGATGCTCTCATGTCCAATGCTCGTGCAGCCGCCAAGAAGAAGACTCCCCAGA 351
|||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 181 CTGCATTTGACGCTCTCATGTCCAATGCTCGCGCAGCTGCCAAGAAGAAGACGCCCCAGA 240
Query 352 CAACTA-ATTTGTCTCGCTCGCCGAACAAAAGGAAAATTGGAGAAACCCAAGATGCTAAT 410
| |||| | | ||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 241 CCACTACA-TCGTCTCGCTCTCCGAATAAAAGGAAAATTGGGGAAACCCAAGATGCTAAT 299
Query 411 TTGGGCAAAACTATTGTTTCCGAAGGTACACTTCCAAAAACGGAGGATCTGCTGGAGCCT 470
||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 300 TTGGGCAAAACCCTTGTTTCCGAAGGTACACTTCCAAAAACGGAGGATCCGGTGGAGCCT 359
Query 471 GTTTCTGATTCTGCAAATCCCAGATCGGATACATCGTCAATTGCGGAGGATTCAAAGACG 530
|||||||||||||||| |||||||||||||| |||||| ||||||| ||||| |||||
Sbjct 360 ATTTCTGATTCTGCAAAACCCAGATCGGATACGTCGTCAGTTGCGGAAGATTCGAAGACC 419
Query 531 GGAGCGAAAAAGGCTAAGACTTTGAGCAAGAC-------A--GACGAAATGAAGAGCAAA 581
||| |||||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct 420 GGAACGAAAAAGGCTAGGACTTTGAGCAAGACGGATAAAATTGACGAAATGAAGAGCAAA 479
Query 582 ATTGGATTGCTGAAGAAGAAGCCGAATGATTTCGATCCTGAAAAAATGTCTTGCTGGGAG 641
||||||||| ||||||||||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct 480 ATTGGATTGTTGAAGAAGAAGCCTAATGATTTCGATCCTGACAAAGTGTCTTGCTGGGAG 539
Query 642 AAAGGGGAGAGAGTTCCGTTTCTGTTTGTCGCATTGGCTTTTGATCTGATCTCAAATGAA 701
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 540 AAAGGGGAGAGAGTTCCGTTTCTGTTTCTCGCATTGGCTTTTGATCTGATTTCAAATGAA 599
Query 702 AGTGGCCGGATTGTGATTACTGATATTCTGTGTAACATGTTGAGAACTGTTATTGCCACT 761
||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 AGTGGGCGAATTGTGATTACTGATATTCTGTGTAACATGTTGAGAACCGTTATTGCCACC 659
Query 762 ACTCCTGAGGATTTGGTCGCTACTGTTTATCTTTCGGCGAATGAGATTGCCCCGGCTCAT 821
||||||||||||||||| ||||||||||| ||| |||| |||||||||||||| ||||||
Sbjct 660 ACTCCTGAGGATTTGGTTGCTACTGTTTACCTTGCGGCAAATGAGATTGCCCCTGCTCAT 719
Query 822 GAAGGTGTAGAATTGGGAATTGGTGAGAGTACAATTATCAAGGCTATCTCTGAGGCTTTT 881
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 720 GAAGGTGTAGAATTGGGAATTGGTGAGGGTACAATTATCAAGGCTATCTCTGAAGCTTTT 779
Query 882 GGTAGAACTGAGGATCATGTTAAGAAGCAGAATACGGAACTGGGAGACTTGGGACTTGTA 941
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 780 GGTAGAACTGAGGATCATGTTAAGAAGCAAAATACGGAACTGGGAGACTTGGGGCTTGTT 839
Query 942 GCAAAAGGAAGCCGTTCGACTCAGACTATGATGTTCAAGCCCGAACCATTGACTGTTGTC 1001
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCAAAAGGAAGCCGTTCAACTCAGACTATGATGTTCAAGCCCGAACCATTGACTGTTGTC 899
Query 1002 AAGGTTTTCGATACGTTTCGACAAATTGCTAAGGAAAGTGGAAAAGATAGTAATGAAAAG 1061
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 900 AAGGTGTTCGATACGTTTCGACAAATTGCTAAGGAAAGTGGAAAAGATAGCAATGAAAAG 959
Query 1062 AAGAAGAATCGAATGAAGGCACTTCTTGTGGCGACAACAGACTGTGAACCTCTTTACTTA 1121
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 960 AAGAAGAATCGAATGAAGGCACTTCTTGTGGCAACAACAGACTGTGAACCACTTTACTTA 1019
Query 1122 ACACGATTACTTCAGGCAAAATTGCGGTTAGGGTTCTCAGGTCAGACTGTCTTAGCCGCA 1181
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1020 ACACGTTTACTTCAGGCAAAATTGCGGTTAGGGTTCTCAGGTCAGACTGTCTTAGCTGCC 1079
Query 1182 TTGGGACAAGCCGCTGTATATAATGAAGAGCACTCAAAGCCACCCCCAAATACCAAGTCT 1241
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TTGGGACAAGCTGCTGTATATAATGAAGAGCACTCAAAGCCACCCCCAAATACCAAGTCT 1139
Query 1242 CCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTATTCACTGTACTTCCTGTCTATGAC 1301
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 1140 CCTTTAGAAGAGGCTGCGAAGATTGTTAAACAAGTATTTACGGTACTTCCTGTCTATGAC 1199
Query 1302 ATTATTGTTCCTGCTCTTCTAAGTGGCGGTGTGTGGAATCTTCCAAAAACTTGTAACTTT 1361
|||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 1200 ATTATTGTTCCTGCTCTTCTAACCGGTGGAGTGTGGAATCTTCCAAAAACTTGTAACTTT 1259
Query 1362 ACATTGGGTGTTCCAATTGGACCCATGCTTGCAAAACCAACCAAAGGTGTAGCTGAGATA 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1260 ACATTGGGTGTTCCAATTGGACCCATGCTTGCAAAACCAACCAAAGGTGTAGCAGAGATA 1319
Query 1422 CTGAATAAATTCCAGGACATCGTTTTCACATGTGAATACAAATATGATGGGGAACGTGCA 1481
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1320 CTGAATAAATTTCAGGACATCGTTTTCACATGCGAATACAAATATGATGGGGAACGTGCA 1379
Query 1482 CAGATACATTTTATGGAGGATGGTACATTTGAGATATACAGTCGAAATGCTGAAAGAAAC 1541
|||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1380 CAGATACATTTTTTGGAAGATGGTACATTTGAGATATATAGTCGAAATGCTGAAAGAAAC 1439
Query 1542 ACTGGGAAGTACCCGGATGTTGCTCTTGCGTTATCAAGATTAAAGAAGCCTTCTGTGAAA 1601
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1440 ACTGGGAAGTACCCGGATGTTGCTCTTGCATTATCAAGATTAAAGAAGCCCTCTGTGAAA 1499
Query 1602 TCTTTTATTCTGGATTGTGAAGTTGTTGCTTTCGACAGGGAGAAAAAGAAAATTCTTCCG 1661
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TCTTTTATTCTGGATTGTGAGGTTGTTGCTTTCGACAGGGAGAAAAAGAAAATTCTTCCG 1559
Query 1662 TTCCAGATTTTGAGCACTCGAGCCCGTAAAAATGTGAATGTCAATGATATCAAGGTTGGC 1721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TTCCAGATTTTGAGCACTCGAGCCCGTAAAAATGTGAATGTCAATGATATCAAGGTTGGC 1619
Query 1722 GTATGCATCTTTGCTTTTGACATGTTATATCTAAATGGCCAACAACTTATCCAGGAGAAT 1781
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1620 GTATGCATCTTTGCTTTTGACATGTTATATCTAAATGGCCAACAACTTATCCAAGAGAAT 1679
Query 1782 CTTAAAATTCGCCGAGAGAAGCTATACGAATCATTTGAGGAAGATCCTGGGTATTTCCAG 1841
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1680 CTTAATATTCGCCGAGAGAAGCTATACGAATCATTTGAAGAAGATCCTGGGTATTTCCAG 1739
Query 1842 TTTGCAACTGCTGTAACATCTAACGATATCGATGAAATACAAAAGTTTCTTGACGCTTCT 1901
|||||||||||| ||||||||| ||||||||||||||| || ||||||||||||||||||
Sbjct 1740 TTTGCAACTGCTCTAACATCTAGCGATATCGATGAAATCCAGAAGTTTCTTGACGCTTCT 1799
Query 1902 GTTGATGTTGGCTGCGAAGGTTTAATCATTAAAACATTGGACTCAGATGCTACCTATGAG 1961
|||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1800 GTTGATGTTGGCTGTGAAGGTTTAATCATTAAAACATTGAACTCGGATGCTACCTATGAG 1859
Query 1962 CCTGCAAAGCGATCAAATAATTGGCTAAAACTGAAGAAAGACTATATGGACAGCATTGGG 2021
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 CCTGCCAAGCGATCGAATAATTGGCTAAAACTGAAGAAAGACTATATGGACAGCATTGGG 1919
Query 2022 GACTCTGTGGATCTTGTACCAATTGCTGCTTTCCATGGACGTGGAAAACGCACAGGTGTC 2081
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1920 GACTCAATGGATCTTGTACCAATTGCTGCTTTCCATGGACGTGGCAAACGCACAGGTGTC 1979
Query 2082 TATGGTGCATTTTTACTCGCTTGCTATGATGTTGATAAGGAAGAGTTCCAGAGCATTTGT 2141
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1980 TATGGTGCATTTTTACTCGCTTGCTATGATGTTGATAAGGAAGAGTTTCAGAGCATTTGT 2039
Query 2142 AAAATTGGTACTGGATTTTCTGATGCCATGCTTGACGAGCGGTCGTCCAGTCTTCGCTCT 2201
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2040 AAAATCGGTACTGGATTTTCTGATGCCATGCTTGACGAACGGTCGTCCAGTCTTCGCTCT 2099
Query 2202 CAAGTGATTGCTACTCCAAAACAATACTACCGAGTTGGAGACAGCCTCAATCCAGATGTT 2261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 CAAGTGATTGCTACTCCAAAACAATACTACCGAGTTGGAGACAGCCTCAATCCAGATGTT 2159
Query 2262 TGGTTTGAGCCCACTGAGGTCTGGGAAGTGAAAGCAGCTGACTTAACAATTAGCCCTGTG 2321
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2160 TGGTTTGAGCCCACTGAGGTCTGGGAAGTGAAAGCAGCTGACTTGACAATTAGCCCTGTG 2219
Query 2322 CACCGTGCAGCTACTGGCATAGTGGATCCTGATAAGGGGATTTCTCTTCGTTTTCCTCGT 2381
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 2220 CACCGTGCAGCTACCGGCATTGTGGATCCTGATAAGGGAATTTCTCTTCGTTTTCCTCGT 2279
Query 2382 CTACTTCGTGTACGGGAAGACAAGAAGCCCGAGGAAGCAACATCATCTGAGCAGATTGCT 2441
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 2280 CTACTTCGTGTACGGGAAGACAAAAAGCCAGAGGATGCAACATCATCTGAGCAGATTGCT 2339
Query 2442 GATTTGTACCAAGCTCAGAAACACAATCATCCAAGTAATGAAGTCAAAGGTGACGATGAT 2501
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2340 GATATGTACCAAGCTCAGAAACACAATCATCCAAGTAATGAAGTCAAAGGTGACGACGAT 2399
Query 2502 TGAACAACAGTAATCTGGCCTCA 2524
|||||||| ||||||||| ||||
Sbjct 2400 TGAACAACTGTAATCTGGTCTCA 2422
> Ahg337048 jgi|Araly1|337048|fgenesh1_pg.C_scaffold_1003613
Length=1878
Score = 902 bits (488), Expect = 0.0
Identities = 686/782 (88%), Gaps = 12/782 (2%)
Strand=Plus/Plus
Query 1195 CTGTATATAATGAAGAGCACTCAAAGCCACCCCCAAATACCAAGTCTCCTTTAGAAGAGG 1254
|||||||||| |||||||| ||||||||||||||||||| |||| ||||||||| ||||
Sbjct 602 CTGTATATAACGAAGAGCATTCAAAGCCACCCCCAAATATCAAGAATCCTTTAGATGAGG 661
Query 1255 CTGCAAAGATTGTTAAACAAGTATTCACTGTACTTCCTGTCTATGACATTATTGTTCCTG 1314
|||||| |||||||||| |||||||| |||| ||||||||||| ||| |||||||| ||
Sbjct 662 CTGCAACGATTGTTAAAGAAGTATTCTCTGTGCTTCCTGTCTACGACCTTATTGTTGGTG 721
Query 1315 CTCTTCTAAGTGGCGGTGTGTGGAATCTTCCAAAAACTTGT-AACTTTACATTGGGTGTT 1373
||||||||| | | ||||||||||||||||| ||||||||| ||| ||||| ||||||
Sbjct 722 CTCTTCTAACTAGTGGTGTGTGGAATCTTCCTAAAACTTGTAAAC-TTACACCGGGTGTC 780
Query 1374 CCAATTGGACCCATGCTTGCAAAACCAACCA-AAGGTGTAGCTGAGATAC-TGAATAAAT 1431
||| || |||||| |||||||||| |||| | || |||||| | |||| || | ||||
Sbjct 781 CCAGTTAGACCCAGGCTTGCAAAAGCAACTACAA-GTGTAGATCTCATACTTG-AGAAAT 838
Query 1432 TCCAGGACATCGTTTTCACATG-TGAATACAAATATGATGGGGAACGTGCACAGATACAT 1490
|| ||||| |||||||||| | |||||||||||||||||| ||||||||||||||||||
Sbjct 839 TCGGGGACACCGTTTTCACA-GCTGAATACAAATATGATGGTGAACGTGCACAGATACAT 897
Query 1491 TTTATGGAGGATGGTACATTTGAGATATACAGTCGAAATGCTGAAAGAAACACTGGGAAG 1550
| |||||||||||||||| | ||||||| |||| || ||||||||||||||||||| |||
Sbjct 898 TATATGGAGGATGGTACAATCGAGATATTCAGTAGACATGCTGAAAGAAACACTGGCAAG 957
Query 1551 TACCCGGATGTTGCTCTTGCGTTATCAAGATTAAAGAAGCCTTCTGTGAAATCTTTTATT 1610
||||| ||||||||||||||||||||||| || |||||||| |||| ||||||||||||
Sbjct 958 TACCCTGATGTTGCTCTTGCGTTATCAAGGTTTAAGAAGCCCGCTGTAAAATCTTTTATT 1017
Query 1611 CTGGATTGTGAAGTTGTTGCTTTCGACAGGGAGAAAAAGAAAATTCTTCCGTTCCAGATT 1670
|||||||| || |||||||| ||| |||||||| ||||||||||||||||| |||||| |
Sbjct 1018 CTGGATTGCGAGGTTGTTGCCTTCAACAGGGAGGAAAAGAAAATTCTTCCGCTCCAGACT 1077
Query 1671 TTGAGCACTCGAGCCCGTAAAAATGTGAATGTCAATGATATCAAGGTTGGCGTATGCATC 1730
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1078 TTGAGCACTCGAGCCCATAAAAATGTGAATGTCAGTGATATCAAGGTTGGCGTATATGTC 1137
Query 1731 TTTGCTTTTGACATGTTATATCTAAATGGCCAACAACTTATCCAGGAGAATCTTAAAATT 1790
||||||||||| || ||||||||||||||||||| |||||||||||||||||| || |||
Sbjct 1138 TTTGCTTTTGATATATTATATCTAAATGGCCAACTACTTATCCAGGAGAATCTGAATATT 1197
Query 1791 CGCCGAGAGAAGCTATACGAATCATTTGAGGAAGATCCTGGGTATTTCCAGTTTGCAACT 1850
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1198 CGCCGAGAGAAGCTATACGATTCATTTGAGGAAGATCCTGGGTATTTCCAATTTGCAACT 1257
Query 1851 GCTGTAACATCTAACGATATCGATGAAATACAAAAGTTTCTTGACGCTTCTGTTGATGTT 1910
||| ||||||| |||||||| | |||| ||||| |||||||| | |||||| |||| ||
Sbjct 1258 GCTCTAACATCCAACGATATTGGTGAATTACAAGAGTTTCTTAAAGCTTCTATTGACATT 1317
Query 1911 GGCTGCGAAGGTTTAATCATTAAAA-CATTGGACTCAGA-TGCTACCTATGAGCCTGCAA 1968
|| || ||||||||||| || ||| ||||| |||| || ||| ||||||||||||||||
Sbjct 1318 GGATGTGAAGGTTTAATGAT-AAAGTCATTGTACTC-GAATGCAACCTATGAGCCTGCAA 1375
Query 1969 AG 1970
||
Sbjct 1376 AG 1377
Score = 558 bits (302), Expect = 6e-158
Identities = 437/502 (87%), Gaps = 10/502 (2%)
Strand=Plus/Plus
Query 2013 AGCATTGGGGACTCTGTGGATCTTGTACCAATTGCTGCTTTCCATGGACGTGGAAAACGC 2072
|||||||| || ||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 1378 AGCATTGGAGATTCTGTGGATCTAGTACCAATTGCGGCTTTCCATGGACGTGGGAAACGC 1437
Query 2073 ACAGGTGTCTATGGTGCATTTTTACTCGCTTGCTATGATGTTGATAAGGAAGAGTTCCAG 2132
|||||| ||| ||||||||||||||| || ||||| ||||| || |||||||| ||||||
Sbjct 1438 ACAGGTTTCTTTGGTGCATTTTTACTAGCGTGCTACGATGTCGACAAGGAAGAATTCCAG 1497
Query 2133 AGCATTTGTAAAATTGGTACTGGATTTTCTGATGCC-ATGCTTGACGAGCGGTCGTCCAG 2191
|||||||||||||||||||||||||||||||| || | |||| | |||| ||| |||||
Sbjct 1498 AGCATTTGTAAAATTGGTACTGGATTTTCTGACGCGGA-GCTTCAAGAGCTGTCTTCCAG 1556
Query 2192 TCTTCGCTCTCAAGTGATTGCTACT-CCAAAACAATACTACCGAGTTGGA-GACAGCCTC 2249
|||| |||| |||||||||||| | |||||||||||||||| ||| | | ||| | |||
Sbjct 1557 TCTTTTCTCTAAAGTGATTGCTA-TACCAAAACAATACTACCAAGTCG-ATGACGGTCTC 1614
Query 2250 AATCCAGATGTTTGGTTTGAGCCCACTGAGGTCTGGGAAGTGAAAGCAGCTGACTTAACA 2309
||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 1615 AATCCAGATGTCTGGTTGGAGCCCACCGAGGTGTGGGAAGTGAAAGCAGCTGACTTGACA 1674
Query 2310 ATTAGCCCTGTGCACCGTGCAGCTA-CTGGCATAGTGGATCCTGATAAGGGGATTTCTCT 2368
||||||||||| || |||||||||| | || || ||||| ||||||||||| ||||||||
Sbjct 1675 ATTAGCCCTGTACATCGTGCAGCTATC-GGAATTGTGGACCCTGATAAGGGAATTTCTCT 1733
Query 2369 TCGTTTTCCTCGTCTACTTCGTGTACGGGAAGACAAGAAGCCCGAGGAAGCAACATCATC 2428
|||||||||||| || | ||||| ||| |||||||||| || |||||||||||||||||
Sbjct 1734 ACGTTTTCCTCGTTTAGTCCGTGTGCGGAAAGACAAGAATCCAGAGGAAGCAACATCATC 1793
Query 2429 TGAGCAGATTGCTGATTTGTACCAAGCTCAGAAA--CACAATCATCCAAGTAATGAAGTC 2486
||| ||||||||||| |||| |||||||||||| |||||||| ||||| ||| ||| |
Sbjct 1794 TGACCAGATTGCTGAAATGTATCAAGCTCAGAAAAACACAATCAACCAAGCAATCAAGGC 1853
Query 2487 AAAGGTGACGATGATTGAACAA 2508
||||||||||| | ||||||||
Sbjct 1854 AAAGGTGACGACGGTTGAACAA 1875
Score = 401 bits (217), Expect = 1e-110
Identities = 372/444 (84%), Gaps = 21/444 (5%)
Strand=Plus/Plus
Query 566 CGAAATGAAGAGCAAAATTGGATTGCTGAAGAAGAAGCC-GAATGATTTCGATCCTGAAA 624
|||| |||||||||||||||||||||||||||||||||| | ||||||||| || ||
Sbjct 171 CGAACTGAAGAGCAAAATTGGATTGCTGAAGAAGAAGCCAGC-TGATTTCGACCC-GAGC 228
Query 625 AAA-TGTCTTGCTGGGAGAAAGGGGAGAGAGTTCCGTTTCTGTTT--GTCGCATTGGCTT 681
||| ||||||| ||||| ||||||||||||||||||||| ||||| ||| | |||||||
Sbjct 229 AAAGTGTCTTGTTGGGACAAAGGGGAGAGAGTTCCGTTTATGTTTCTGTC-C-TTGGCTT 286
Query 682 TTGATCTGATCT-CAAATGAAAGTGGCCGGATTGTGATTACTGATATTCTGTGTAACATG 740
|||||||||| | || |||||||||||||||||| || ||||||||||| |||||||||
Sbjct 287 TTGATCTGAT-TGCACTTGAAAGTGGCCGGATTGTCATCACTGATATTCTATGTAACATG 345
Query 741 TTGAGAACTGTTATTGCCACTACTCCTGAGGATTTGGTCGCTACTGTTTATCTTTCGGCG 800
|||||||| | || |||||||||| || |||||| | |||| ||||||||| ||||
Sbjct 346 TTGAGAACCGCCATCGCCACTACTCAGGATGATTTGCTTTCTACGGTTTATCTTGCGGCC 405
Query 801 AATGAGATTGCCCCGGCTCATGAAGGTGT-AGAATTGGGAATTGGTGAGAGTACA---AT 856
||||||||||| || |||||||||||||| | |||||||||||||| || || | ||
Sbjct 406 AATGAGATTGCACCTGCTCATGAAGGTGTCA-AATTGGGAATTGGTAAGGGTTCCTCCAT 464
Query 857 TATCAAGGCTATCTCTGAGGCTTTTGGTAGAACTGAGGATCATGTTAAG-AAGCAGA-AT 914
||| ||||| ||||| || |||||||| |||||| ||| ||| |||||| || || | ||
Sbjct 465 TATTAAGGCAATCTCAGAAGCTTTTGGGAGAACTAAGGCTCAGGTTAAGCAA-CA-ATAT 522
Query 915 ACGGAACTGGGAGACTT-GGGACTTGTAGCAAAAGGAAGCCGTTCGACTCAGACTATGAT 973
|| || |||||||||| ||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 523 ACACAATTGGGAGACTTAGGG-CTTGTAGCAAAAGGAAGCCGTTCCTCTCAGACTGTGAT 581
Query 974 GTTCAAGCCCGAACCATTGACTGT 997
|||| || | ||||||| |||||
Sbjct 582 CTTCATGCACAAACCATTAACTGT 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102424668805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5