BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08135.1
Length=2391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470871 jgi|Araly1|470871|fgenesh2_kg.1__825__AT1G08135.1 3142 0.0
> Ahg470871 jgi|Araly1|470871|fgenesh2_kg.1__825__AT1G08135.1
Length=2433
Score = 3142 bits (1701), Expect = 0.0
Identities = 1974/2106 (94%), Gaps = 17/2106 (1%)
Strand=Plus/Plus
Query 299 TCTTAAGTGAGATGTTTGGATCTATGCAAATACCATGTTTAAAGCATATATTTATCCATT 358
|||||| |||| |||||||||| ||||||||| ||||||| ||||||||||||||||||
Sbjct 332 TCTTAAATGAGGTGTTTGGATCGATGCAAATATCATGTTTTAAGCATATATTTATCCATG 391
Query 359 ATAACCAGTATATGACAAAGGTTCCTGATACTATAGGCGCATTTGCTTTTGTCCTAGATT 418
||||| |||||||| |||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 392 ATAACAAGTATATGCCAAAGGTTGCTGATACTATAGGTGCATTTGCTTTTGTCCTAGATT 451
Query 419 GGTTTCTAAGGGGAGTGACTACAGATGTTGGAATAATGAAAAAGTCAGGAACTAAGAGTG 478
|||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 452 GGTTCCTAAGAGGAGTGACTACGGATGTTGGAATAATCAAAAAGTCAGGAACTAAGAGTG 511
Query 479 TTGTAATTGGGATCACCTCAATGATCATCCCATGGCAAATAGGAAAACTCCTTTATTCAT 538
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 TTGTAATTGGAATCACCTCAATGATCATCCCATGGCAAATAGGAAAACTCCTTTATTCAT 571
Query 539 CTAGAGAGAAATCAAGTATTCTGACCATGACAGAAATGGAGTATACCGTAATGACATTCA 598
||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||
Sbjct 572 CTAGAGAGAAATCAAGTATCCTGACCATGACAGAAAACGAGTATAACGTAATGACATTCA 631
Query 599 CAATGAGCATGACGCCTTTCACTTGCGTCAACATGTTGCTTACTGACCTCAAGATAGTTC 658
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 632 CCATGAGCATGACGCCTTTCACGTGCGTCAACATGTTGCTTACTGACCTCAAGATAGTTC 691
Query 659 ACACTGATTTCGGCCAAATAGCTCAGTCAGCGGGAATGGTAACAGATTTGCTTGCCTTTT 718
||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 692 ACACTGATTTCGGCCAAATAGCTCAGTCATCGGGAATGGTAACCGATGTGCTTGCCTTTT 751
Query 719 TCTTGACTGTATCGGCTTACGTTAGCCGTGATGAAACTCAAGGAGTGAAAATGGGATTAG 778
|||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||| |
Sbjct 752 TCTTGACTGTATGGGCTTACATTAGCCGTGATGAAACTCAAGGAGTGAAGATGGGATTTG 811
Query 779 CTTTTATGGCATTCTTTATTTTTGTGTACCTTGTGCGACAATTTATGCTTTGGGTTATAA 838
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
Sbjct 812 CTTTTATGGCATTCTTCATTTTTGTGTACCTTGTGCGACAATTTATGCTGTGGGTAATCA 871
Query 839 GACATACGCCAGAAGGAGCCCCGGTGAAGAACGTCTATCTCTACATTGGTCTCTTGCTTG 898
||||||| ||||| ||||| || ||||||||| ||||||||||||||||||||||||| |
Sbjct 872 GACATACCCCAGAGGGAGCGCCAGTGAAGAACATCTATCTCTACATTGGTCTCTTGCTGG 931
Query 899 CTTACTTATCTTATCTTTATTGGAGCCGCTTCTTATTCTTCGGACCGCTAGGGGCATTTG 958
||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||
Sbjct 932 CTTACTTATCTTATCTTTACTGGAACCGCTTCTTATTCTTCGGACCGCTGGGGGCATTTG 991
Query 959 CTCTTGGTTTGGCTGTCCCTAACGGGCCGCCATTAGGATCAGTATTTATACAAAAATTCG 1018
|||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 992 TTCTTGGTTTGGCTGTCCCTAACGGACCGCCTTTAGGATCGGTATTTATACAAAAATTCG 1051
Query 1019 ATAGCTTCAACGAGGGCAtttttttACCCCTCTTTGGATCACTTAGCATGATCAAACTAG 1078
|||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1052 ATAGCTTCAATGAGGGCATTTTTTTACCCCTCTTTGGCTCACTTAGCATGATTAAACTAG 1111
Query 1079 ATTGGTCATTTCTACGAAAGGAGTTTGGA-A--A---TGGA-A-GG----CATCTCCATG 1126
|||||||||||||||| |||||||||||| | | |||| | || ||||||||||
Sbjct 1112 ATTGGTCATTTCTACGGAAGGAGTTTGGAGATGAGTTTGGAGATGGAAAACATCTCCATG 1171
Query 1127 GACATATGTACGAGTGTTTTTCCTTCCTTCCCATCGTATACATAGCGAAATTCGCTACTT 1186
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1172 GACATATGTACGAGTGTTTTTCATTCCTTCCCATCGTATACATAGCGAAATTCGGTACTT 1231
Query 1187 CGTTTTTAGCCGCCTTAGCTACAAAGATACCTTTGAGAGACTCAATTATCCTAGGTGTCA 1246
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1232 CGTTTTTAGCCGCCATAGCTACAAAGATACCTTTGAGAGACTCAATTATCCTAGCTGTCA 1291
Query 1247 TTATGGGCACCAAGAGTAGTTTCGAGTTGGGTTACGTACTTACAGCCTTCGAAAAAGACA 1306
|||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||| |||
Sbjct 1292 TTATGGGCACCAAGAGTAGTTTTGAGTTGGCTTACGTACTCACAGCCTTCGAAAAATACA 1351
Query 1307 GGATTAGTCTGGAGGTCTTGTCGCTCCTGGGCGTATACATTCTCGTAAACTCTTTGTTAA 1366
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 GGATTAGTCTGGAGGTTTTGTCGCTCCTGGGCGTATACATTCTCGTAAACTCTTTGTTAA 1411
Query 1367 CACCAATGGCTATACATTTCCTGTATGACCGGTCTAAGAGATTTGTGTGTTACGGAAGAA 1426
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1412 CACCAATGGCTATACATTTCTTGTATGACCGGTCTAAAAGATTTGTGTGTTACGGAAGAA 1471
Query 1427 GAAACTTGAAAGAGAAGCCAGAAATGCAAACGCTGGTGTGCATCAACAAGCCTGACAACA 1486
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1472 GAAACTTGAAACAGAAGTCAGAACTGCAAACGCTGGTGTGCATCAACAAGCCTGACAACA 1531
Query 1487 TAACATCGATGATTAGCCTTCTTAGAGCAACTTCCCCATCTAAAGACTCTCCAATGGAAT 1546
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1532 TAACATCGATGATTAGCCTTCTCAGAGCAACTTCCCCATCTAAAGACTCTCCAATGGAGT 1591
Query 1547 GTTGTGTTCTTCACCTAATAGAGTTATTGGGTCAAGCTACTCCCACGTTTATCTCCCACC 1606
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1592 GTTGTGTTCTGCACCTAATAGAGTTACAAGGTCAAGCTACTCCCACGTTTATCTCCCACC 1651
Query 1607 AGCTTCAAAAACCAAAGCCTGGAAGTCGGTCTTATTCCGAAAATGTCATAAGCTCTTTCC 1666
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1652 AGCTTCAGAAACCAAAGCCTGGAAGTCGGTCTTACTCCGAAAATGTCATAAGCTCTTTCC 1711
Query 1667 AACTGTTTCAAGAGGTTTATTGGGACTCCGCTTCCATAAACATGTTCACGTCTTTAACTT 1726
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1712 AACTGTTTCAAGAGATTTATTGCGACTCCGCTTCCATAAACATGTTCACGTCTTTAACTT 1771
Query 1727 CCGCTAAAGAGATGCATGAACAAATATGTTGGTTTGCTCTTAGTCAAGGTTCCAATCTTA 1786
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1772 CCGCTAAAGAGATGCATGAACACATATGTTGGTTTGCTCTTAGTCAAGGTTCAAATCTTA 1831
Query 1787 TTCTCCTCTCGTTTCACCGCACTTGGGAGCCTAACGGAAATGTCATTATCTCAGACGATC 1846
||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||||
Sbjct 1832 TTCTCCTCTCGTTTCACCGCACTTGGGGGCCTGACGGAAGTGTCGTTATCTCAGACGATC 1891
Query 1847 AAACCCTAAGAAGTCTTAATCTTAATGTTCTGAAACGCGCCCCTTGTTCTGTCGGAATCT 1906
|||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1892 AAACCCTAAGAACCCTTAATCGTAATGTTCTGAAACGAGCCCCTTGTTCTGTCGGAATCT 1951
Query 1907 TTGTTTATCGCAAACCAATTTGGCAAACCAAAGCCCTAGAATCTCCGTGCCGTGTGTGCT 1966
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1952 TCGTTTATCGCAAACCAATTTGGCAAACCAAAGCCCTAGAATCTCCATGCCGTGTGTGCT 2011
Query 1967 TGATTTACGTGGGTGGGAATGACGACAAAGAGGCCCTGGCATTAGCTGACCACATGAGAG 2026
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2012 TGATTTATGTGGGTGGGAATGACGACAAAGAAGCCCTGGCATTAGCTGACCACATGAGAG 2071
Query 2027 GTAACCAACAAGTGATTCTAACGGTCTTGCGTCTGATCCCTACGTCTTATGCCGATGAGA 2086
||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||| |
Sbjct 2072 GTAACCAACAAGTGATTCTAACGGTGATGCGTTTGATCCCTGCGTCTCATGCCGATGATA 2131
Query 2087 GTAGCTTGAGGATTCATAGCCAAATGGTAGACATGAACCGTCATGAAGACCAAAGGCCTG 2146
|||| |||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 2132 TTAGCAAGAGGATTCATAGTCAAATGGTAGACATGAACCGTCATGAAGAT-A--GGCCTC 2188
Query 2147 GAGATAAGTCAACCATCATTGACTGGACGGTGGGAGATGGCACAGAGACATCCAAAATTT 2206
||||| | |||| ||||||||| ||||||||||| ||||| |||||||| ||||| ||||
Sbjct 2189 GAGATGACTCAATCATCATTGATTGGACGGTGGGGGATGGTACAGAGACTTCCAAGATTT 2248
Query 2207 TGCACTCCGTGTCTTACGACTATGATCTATTCATAGTCGGTCGAAGAAGTGGGGTTGGTA 2266
||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct 2249 TGCACTCCGTGGCTTACGACTATGATCTATTTATAGTCGGTAGAAGAAGTGGGTTTGGTA 2308
Query 2267 CTACAGTCACCAGAGGACTCGGGGATTGGATGGAATTCGAAGAACTTGGAGTCATTGGAG 2326
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2309 CTACAGTCACTAGAGGACTCGGGGATTGGATGGAATTCGAAGAACTTGGAATCATTGGAG 2368
Query 2327 ATTTGTTAGCATCTGAATATTTTCCTTCTAGAGCCTCCGTGTT-AGTCGTCCAACAACAA 2385
||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||
Sbjct 2369 ATTTGTTAGCATCTGAATATTTTCCTTCTAGAGCCTCCGTGTTGA-TCGTGCAACAACAA 2427
Query 2386 GAGTGA 2391
|| |||
Sbjct 2428 GAATGA 2433
Score = 475 bits (257), Expect = 6e-133
Identities = 279/290 (96%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 1 ATGGATGCAGAAAATGCGACTTGGCGCAAAGAGTTCATGTGGAACAACGATGAGAAAAGA 60
||||||||||||||||||||||||||||||||| |||||||| || |||||| |||||||
Sbjct 1 ATGGATGCAGAAAATGCGACTTGGCGCAAAGAGCTCATGTGGGACGACGATGGGAAAAGA 60
Query 61 GCAGAGATGGGGACGAAGATGTTTTGCGATGTAAGTCCACATATAATGTTGAACTCACAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCAGAGATGGGGACGAAGATGTTTTGCGATGTAAGTCCACATATAATGTTGAACTCACAT 120
Query 121 GGCGTTGCAGAGAAAATGGCTTCCGGATCTAAGGGAATGGATTTTTGGGAGTACCCTCTT 180
|||||| |||||||||||| ||| |||| |||||||||||| ||||||||||||||||||
Sbjct 121 GGCGTTTCAGAGAAAATGGATTCTGGATATAAGGGAATGGAATTTTGGGAGTACCCTCTT 180
Query 181 CCACAATTGGAGATCATTATTCTCTCCATATTCCTATTATGGCGTTTATTTGATATGTTG 240
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 CCACAATTGGAGATCATAATTCTCTCCATATTCCTATTATGGCGCTTATTTGATATGTTG 240
Query 241 TTCAAGAAGTTAGGTGTTCCTATCCCCAAGTTCACCTCCATGATGCTTGT 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCAAGAAGTTAGGTGTTCCTATCCCCAAGTTCACCTCCATGATGCTTGT 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90083429425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5