BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08140.1 Length=2714 Score E Sequences producing significant alignments: (Bits) Value Ahg470872 jgi|Araly1|470872|fgenesh2_kg.1__826__AT1G08140.1 4060 0.0 > Ahg470872 jgi|Araly1|470872|fgenesh2_kg.1__826__AT1G08140.1 Length=2672 Score = 4060 bits (2198), Expect = 0.0 Identities = 2519/2677 (94%), Gaps = 10/2677 (0%) Strand=Plus/Plus Query 1 AATCGAATTACAAACCCTAAATCATTCCATTAGATCTTCTTGATCCCTAAGCAAGTCTCT 60 ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 1 AATCGAACTACAAACCCTAAATCATTCCATTAGATTTTCTTGATCCCTAAGCAATTCTCT 60 Query 61 TCGTTAACTTTTGTCTTTCTCCTTAAAATGGCTACAGAGGAGATAGACATGAGTTATTGG 120 ||||||||||||| ||||||||||||||||| ||||||| |||| ||||||||||||||| Sbjct 61 TCGTTAACTTTTGACTTTCTCCTTAAAATGGATACAGAGCAGATGGACATGAGTTATTGG 120 Query 121 GACGTGTCATGGGGAGAATTCAATGAAGACAAGAACTCGTCTATCTTCTGCGAGTCACAC 180 ||| || ||||| |||||| |||||||||||| ||| ||||| |||||||||| ||||| Sbjct 121 GACATGACATGGCGAGAATACAATGAAGACAACAACACGTCTCGCTTCTGCGAGACACAC 180 Query 181 CCTCACATAGTAAATTCGCACGGGATATGGGAGGTTATGACTTTCAAGAGAGGGATGAAC 240 ||| |||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| Sbjct 181 CCTTACATAGTAAATTCGCACGGGATATGGGAAGTTTTGACTTACAAGAGAGGGATGAAA 240 Query 241 TTCTGGGAATATCCGCTCCCGAATCTCGAGATCTTAATCTTTTCTACtttttttATATGG 300 ||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||| Sbjct 241 TTCTGGGAATATCCGCTACCGAATCTTGAGATCTTAATCTTTTCTACTTTTTTAATATGG 300 Query 301 CGGCTTCTCGACATCTCATTCAACAAAATTGGTCTTCGAGTACCTAGATTCACATATATG 360 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 301 CGGCTTCTCGACATCTCATTCAACAGAATTGGTCTTCGAGTACCTAGATTCACCTATATG 360 Query 361 ATGATCGCAGGGATAATTTTAGGTCAAACTTGCCATTTCAGCAACAAGTCTTGGATCCAT 420 ||||||||||||||||| |||||||||||||||||| | ||||||||||||||| ||||| Sbjct 361 ATGATCGCAGGGATAATCTTAGGTCAAACTTGCCATGTAAGCAACAAGTCTTGGCTCCAT 420 Query 421 GACAtttttttCCCTGATGATAACCGACCAAAGGTGGCCGAGACCCTAGGGGCTTTCGGC 480 |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 421 AACATTTTTTTCCCTGATGATAACCGACCAAAGGTCGCCGAGACGCTAGGGGCTTTCGGC 480 Query 481 TTCGTTTTATATTGGTTCCTCAAAGGTGTGACCATGGATGCCGAATTGCCATTTAGGACG 540 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 481 TTCGTTTTATATTGGTTCCTCAAAGGTGTGACCATGGATGCCGAATTGCCATTTAAGACG 540 Query 541 GAGAAAAGGTCTAGTGTGATCGGATTCATTACAGTAATTATACCCTTGATTTGTGGCAGC 600 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 541 GAGAAAAGGTCTAGTGTGATCGGATTCATTACAGTATTTATACCCTTGATTTGTGGCAGC 600 Query 601 CTCACTTTTAGATATAGAGAACGAAGAGGGGAC-TCAAGCATATTAAGGATGGAATACAG 659 ||||| ||||||| ||||||||||||||| || | |||| | ||||||| ||| ||||| Sbjct 601 CTCACATTTAGATGGAGAGAACGAAGAGGGAACAT-AAGCTTGTTAAGGACGGAGTACAG 659 Query 660 GTTGATCATATTCTTGCAAAGCATATCCGCGTTCACGAGCATCGACACACTCCTAAAAGA 719 |||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| Sbjct 660 GTTGATCATATTCTTGCAAAGCATATCCGCGTTCACTAGCATTGACACACTCTTAAAAGA 719 Query 720 CCTCCAGATCAAACACTCAGAGTTTGGGAGGATAGCCCTCTCTGGGGCTATGGTGACTGA 779 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 720 CCTCCAGATCAAACACTCAGAGTTTGGGCGGATAGCCCTCTCTGGGGCTATGGTGACTGA 779 Query 780 CATGTTGGCTTTTGGTGTAACATTTTTTAATGCAATCTACTACGAAAAAT-TGTACGGCT 838 |||||||||||||| ||| |||||||| ||||||||||||| ||| || | ||||||| Sbjct 780 CATGTTGGCTTTTGTTGTTACATTTTTCAATGCAATCTACTGGGAAGGATAT-TACGGCT 838 Query 839 TCATGCAAACCGTAGGTTTCTGCCTCTTTGTCGTCGTTATGATATGCGTTGTGCGGCCGG 898 | ||||||||| ||||||||||||||||||||||||||||||| | ||||||| |||| Sbjct 839 TTATGCAAACCATAGGTTTCTGCCTCTTTGTCGTCGTTATGATCTTCGTTGTGAGGCCAA 898 Query 899 CTATGTATTGGGTGATCAAGCAGACTCCAGAAGGGAGGCCGGTCAAGGATTTCTACCTCT 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 CTATGTATTGGGTGATCAAGCAGACTCCAGAAGGGAGGCCGGTCAAGGATTTCTACCTCT 958 Query 959 ACTCGATTTTTGGGATTGCTTTCGCCTGCTTCACtttttttAACAAGGTTATTCATCTTT 1018 |||||||||||||| |||||||||||| |||||| |||||| |||||| ||||||||||| Sbjct 959 ACTCGATTTTTGGGCTTGCTTTCGCCTCCTTCACCTTTTTTGACAAGGCTATTCATCTTT 1018 Query 1019 TTGGACCCGCGGGATCATTTGTTTTCGGCTTGACGGTTCCAAATGGATATCCTTTAGGTA 1078 ||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| |||||| Sbjct 1019 TTGGACCTGCGGGATCATTTGTTTTTGGCTTGACTGTTCCGAATGGATATCCATTAGGTG 1078 Query 1079 CTACTTTGATTCAAAAGTTTGAGAGCTTTAATCTTGGCTCTATTTTGCCACTCTTTGGAT 1138 |||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 1079 CTACTTTGGTTCAAAAGTTTGAGAGCTTTAATCTTGGAGCTATCTTGCCACTCTTTGGAT 1138 Query 1139 CATTAACCATGATGCAAGTAGATCTCTTACGGTTGTTCAAAGAGAGTGGAGATTTAATAC 1198 ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| |||| Sbjct 1139 CATTAACCATGATGCAAGTAGATCTCTTATGGTTGGTCAAAGAGAGTGGAAATTTCATAC 1198 Query 1199 GGATGGAGGGTCAAATCTATGAGGTCATTTCCTTTATTCTTTTGGTGAATACCA-CAAAA 1257 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1199 GGATGGAGGGTCAAATCTATGAGGTCATTTCCTTTATTCTTTTGGTGAATA-CAGTAAAA 1257 Query 1258 TTCGTTGTTACCACCATAACCGCGTATGCTTTTAAAATGCCCTTGAGAGACTCTTTTGCT 1317 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1258 TTCGTTGTTACCACCATAGCCGCGTATGCTTTTAAAATGCCCTTGAGAGACTCTTTTGCT 1317 Query 1318 TTAGCCCTTGTGCTTAGTAATAAGGGGATCTTCGAGCTCGCCTACTACACGTACGCGGTT 1377 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1318 TTAGCCCTTGTGCTTAGTAATAAGGGGATCTTCGAGCTCGCCTACTACACGTTCGCGGTT 1377 Query 1378 GAATTAAAGCTAATAAGGCCAGAGGTTTTCACAATCCTAGCTGCCTACACCCTCTTGAAC 1437 ||| ||||||||||||||||||||||||||||||||||||| |||| | |||||||||| Sbjct 1378 GAAATAAAGCTAATAAGGCCAGAGGTTTTCACAATCCTAGCAGCCTTCTCCCTCTTGAAT 1437 Query 1438 TCTATCTTTATACCAATGCTCTTGGAGCTCGTGCATGACCCAACCAAAAGATTCAGATGC 1497 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1438 TCTATCTTTATACCAATGCTCTTGGAGCTCGTGCATGACCCAACCAAAAGATTCAAATGC 1497 Query 1498 TACCGAAAAAGGAATTTGGGCATCTTGAAAGACGGTGCGGCTCTCCAATGTCTTATGTGC 1557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1498 TACCGAAAAAGGAATTTGGGCATCTTGAAAGACGGTGCGGCTCTCCAATGTCTTATGTGC 1557 Query 1558 GTCTACAGACCTGATCACATAACTTCCATGACCGACCTCTTGGAAACTTTTAGCCCATCA 1617 ||||||| ||||||||||||||||||||||| |||||| |||||||| |||| ||||||| Sbjct 1558 GTCTACAAACCTGATCACATAACTTCCATGATCGACCTTTTGGAAACATTTAACCCATCA 1617 Query 1618 CAAGATTCCCCAATGGCGTGTAACATACTTCACCTCGTCGAGCTTGTGGGTCAAGCCAAT 1677 |||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 1618 CAAGATTCTCCAATGGCGTGTAACACACTTCACCTCGTCGAACTTGTGGGTCAAGCCAAT 1677 Query 1678 CCTATGTTCATTTCCCACCAGTTGCAAAAACCAGAGCCCGGAAGTACTTCTCTGTCTGAC 1737 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||| Sbjct 1678 CCTATGTTCATTTCCCACCAGTTGCAACAACCAGAGCCCGGAAGTACTTCTCTTTCCGAC 1737 Query 1738 AATGTCATAATCTCCTTCCGTGGCTTCCAAAGACAATTCTTTGAATACACATCGTTGGAT 1797 ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 1738 AATGTCATAATCTCCTTCCGTCGCTTCCAAAGACAATTCTTTGAATTTACATCGTTGGAT 1797 Query 1798 ATTTTCACTTCCGTCTCCGTGTCCCAACACATGCATGAGGACATTTGTTGGCTAGCCCTA 1857 ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1798 ATTTTTACTTCCGTCTCCTTGTCCCAACACATGCATGAGGACATTTGTTGGCTAGCCCTA 1857 Query 1858 TCCAGAAGCCTATCTTTGATTGTGCTTCCTTTCCACCGAACCTGGTCCGTTGATCGATCC 1917 |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1858 TCCAGAAGTCTATCTCTGATTGTGCTTCCTTTCCACCGAACCTGGTCCGTTGATCGATCC 1917 Query 1918 ACGGTTATCTCCAACGATGATAATCTGAGAATGCTCAACGTTAACGTCCTGAGACGAGCC 1977 ||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||||| ||| Sbjct 1918 ACGATTATCTCCAACGATGATAAGCTGAGAATGATCAACCTTAACGTCCTGAGACGTGCC 1977 Query 1978 CCATGCTCTGTTGGAATCTTCGTCTATCGCAAGCCCATCGTTGAATCTCATATGGCTAAG 2037 ||||||||||||| ||||||| ||||||||||||||||||| |||||||||||| ||| Sbjct 1978 CCATGCTCTGTTGCAATCTTCATCTATCGCAAGCCCATCGTCGAATCTCATATGATTAAT 2037 Query 2038 TCCCACAGCAAGATATGTTTGATTTTTAACGGTGGAAAAGACGATAGAGAAGCTTTGGCG 2097 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2038 TCCCACAGCAAGATATGTTTGATTTTTAACGGTGGAAAAGACGATACAGAAGCTTTGGCG 2097 Query 2098 ATAACAAATCGAATGAGACTGACAGAAAAACGAACAAGGCTAACGATCATAAGATTCATT 2157 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2098 ATAACAAATCGAATGAGACTGACAGACAAACGAACAAGGCTAACGATCATAAGATTCATT 2157 Query 2158 CCAAAATCTTCTGAAATGGATAACGATGAGTGGGAGCAACAGCAATCGATTAACCTAAAG 2217 |||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||| Sbjct 2158 CCAAAATCTTCTGAAATGGATAACCATGAGTGGGAACAGCAGCAATCGATTAACCTAAAG 2217 Query 2218 GAGTCCGTGACTAGCATCGTTGGGTCCAACATCAAAGAAAATGATGCCAAGGTGACATAT 2277 ||||||||||||| | || ||||||||||||||||||||||||||| |||||||||||| Sbjct 2218 GAGTCCGTGACTAACCTCATTGGGTCCAACATCAAAGAAAATGATGAGAAGGTGACATAT 2277 Query 2278 ATCGATAAGGCGGTTTCTGATGGATCTGAGACCTCAAGAATCTTACGAGCAATGGCAAAT 2337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2278 ATCGATAAGGCGGTTTCTGATGGATCTGAGACCTCAAGAATCTTACGAGCAATGGCAAAT 2337 Query 2338 GATTATGACTTGTTTATCGTTGGAAGCGGCAGCGGAATAGGAACTGAGGCTACTAGCGGA 2397 |||||||||||||||||||||||||| | |||||||||||| |||||||| ||||||||| Sbjct 2338 GATTATGACTTGTTTATCGTTGGAAGAGACAGCGGAATAGGTACTGAGGCAACTAGCGGA 2397 Query 2398 ATTAGTGAATGGACAGAGTTCAATGAATTGGGACCTATTGGAGATTTATTAGCATCACAT 2457 ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 2398 ATTAGTGAATGGACAGAGTTCGATGAATTGGGACCCATTGGAGATTTATTAGCATCACAT 2457 Query 2458 GAATATCCTTCAAGTGCATCAGTGTTGGTTGTTCAAAAACAAGTGTACATTCATCATACA 2517 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2458 GAATATCCTTCGAGTGCATCAGTGTTGGTTGTACAAAAACAAGTGTACATTCATCATACA 2517 Query 2518 AAAAGCCAAAGGAGAAAATCTTTCTAAGAAATAATGCGAGATATGTTCAATGCTCAGCTT 2577 |||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct 2518 AAAAGCCAAAAAAGAATATCTTTCTAAGAAATAATGTGAGATATGTTCAATGCTCAGCTG 2577 Query 2578 TTCAATGTTGTATTTCTCTACATCAATAAACATTAGTTTTAGGCTGCTTGAAGTTATGGA 2637 |||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||| |||| Sbjct 2578 TTCAATGTTGTATTTCTCTACATCAA-AAAGATTAGTTT-AGGCTGCGTGAAGTTGTGGA 2635 Query 2638 GTAAT-TGA-TTCGAGTTTCTTCTGGATATGATGATA 2672 |||| | | ||||||||| ||||| ||||||||||| Sbjct 2636 GTAAAATAAATTCGAGTTTTTTCTGCATATGATGATA 2672 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102386578560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5