BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08160.1
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470877 jgi|Araly1|470877|fgenesh2_kg.1__831__AT1G08160.1 1271 0.0
> Ahg470877 jgi|Araly1|470877|fgenesh2_kg.1__831__AT1G08160.1
Length=846
Score = 1271 bits (688), Expect = 0.0
Identities = 798/848 (94%), Gaps = 20/848 (2%)
Strand=Plus/Plus
Query 6 AATCTTTGCTCTCTATCCTTTCCAAGCAATTAACT-GAAGTCCATCAAAACCTTCTCTGA 64
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 1 AATCTTTGCTCTCTATCCTTTCCAAGAAATTAACTAGAAGTCCATCAAAATCTTCTCTGA 60
Query 65 CAATGGTGCCTCCAAACCCAGCCCACCAACCGGCTCGGCGAACGCAACCGCAACTGCAAC 124
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 61 CAATGGTGCCTCCAAACCCAGCCCACCAACCGGCTCGGCGAACGCAACCGC-A--GCAA- 116
Query 125 CCCAATCGCAACCTCGAGCACAACCCCTGCCGGGCAGGCGTATGAACCCCGTCCTATGCA 184
|| ||| | | | | |||||||| |||||||||||||||||||||||||||||||
Sbjct 117 -CC--TCG--A-C-C--G--CAACCCCTTCCGGGCAGGCGTATGAACCCCGTCCTATGCA 165
Query 185 TCATCGTCGCCCTCGTCCTCTTGGGACTCCTCGTGGGTCTCGCCATATTGATCACATACC 244
||||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 166 TCATCGTTGCCCTCGTCCTCTTGGGACTACTTGTGGGTCTCGCCATATTAATCACATACC 225
Query 245 TCACACTCAGGCCAAAGCGACTCATCTACACGGTAGAAGCCGCGTCGGTCCAAGAGTTTG 304
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 226 TCACACTTAGGCCAAAACGACTCATCTACACGGTAGAAGCCGCGTCGGTCCAAGATTTTG 285
Query 305 CTATAGGCAACAATGACGATCACATCAACGCAAAATTCAGCTACGTGATCAAATCATACA 364
||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||
Sbjct 286 CTATAGGCAACAATGACGATCACATTACCGCAAAATTCAGCTATGTGATCAAATCATACA 345
Query 365 ACCCGGAGAAACATGTCTCCGTAAGATACCACTCCATGCGTATCTCCACGGCTCATCATA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 ACCCGGAGAAACATGTCTCCGTAAGATACCACTCCATGCGTATCTCCACGGCTCATCATA 405
Query 425 ACCAGTCCGTGGCTCACAAAAATATCTCTCCTTTCAAGCAACGTCCTAAGAACGAGACTA 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 ACCAGTCCGTGGCTCACAAAAATATCTCTCCTTTCAAGCAACGTCCTAAGAACGAGACTA 465
Query 485 GGATTGAGACGCAGCTTGTGTCCCACAATGTGGCACTGTCTAAGTTCAATGCCAGGGACT 544
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 466 GGATTGAGACGCAGCTTGTGTCCAAGAATGTGGCACTGTCTAAGTTCAATGCCAGGGACT 525
Query 545 TAAGGGCTGAAAAATCAAAAGGGACGATCGAAATGGAAGTGTATATAACGGCTAGAGTGA 604
| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 526 TGAGGGCTGAAAAATCAAAAGGAACGATCGAAATGGAAGTGTATATAACAGCTAGAGTGA 585
Query 605 GCTACAAGACGTGGATTTTCCGGTCGAGAAGACGTACGTTGAAGGCTGTGTGTACGCCGG 664
|||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| |
Sbjct 586 GCTACAAGACGTGGATTTTCTGGTCGAGGAGACGTACTTTGAAGGCTGTGTGTACGCCTG 645
Query 665 TAATGATCAACGTTACATCAAGCTCGTTGGATGGATTCCAGAGAGTGTTATGCAAAACTC 724
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 646 TAATGATCAACGTTACATCAAGCTCGTTGGATGGATTCCAGAGAGTCTTATGCAAAACTC 705
Query 725 GTCTTTAGTTTGATTTATCCTCATCTTGAATTGGTTTCATTTGTGTGCAAAATTTGCTAT 784
||||||||||||| |||| | |||||| |||||||||||||||||||||||||||||||
Sbjct 706 GTCTTTAGTTTGAATTATTATTATCTTGTATTGGTTTCATTTGTGTGCAAAATTTGCTAT 765
Query 785 ATGTGACATTGATTGATtgtgtgtgtgtttttcctttt-taaatttcct-ctttggtttt 842
||||| | ||||||||||||||||||||||||| |||| |||||||| | ||||||||||
Sbjct 766 ATGTGCCCTTGATTGATTGTGTGTGTGTTTTTC-TTTTCTAAATTTC-TGCTTTGGTTTT 823
Query 843 gttctttt 850
||||||||
Sbjct 824 GTTCTTTT 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34005641964
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5