BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G08170.1

Length=732
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470878 jgi|Araly1|470878|fgenesh2_kg.1__832__AT1G08170.1          623    6e-178


> Ahg470878 jgi|Araly1|470878|fgenesh2_kg.1__832__AT1G08170.1
Length=615

 Score =  623 bits (337),  Expect = 6e-178
 Identities = 411/445 (92%), Gaps = 11/445 (2%)
 Strand=Plus/Plus

Query  289  GAGACTCCGGTGGAGGTTCGAGATGAACCTTCACCTCAGCCACCGGAAACTCCCGCTTCC  348
            |||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct  181  GAGATTCCGGTGGAGGTTCGAGATGAACAGTCACCTCAGCCACCGGAAACTCCCGCTTCC  240

Query  349  AAGAGTGAAGGCACTTTgaagaaaacagataaggttgagaagaagcaggagaataagaag  408
            |||||||||||||||||||| |||||||||| ||||||||||||| |  ||   ||||| 
Sbjct  241  AAGAGTGAAGGCACTTTGAAAAAAACAGATACGGTTGAGAAGAAG-A--AG---AAGAA-  293

Query  409  aagaagaaaaagaagaagagagaCGATTTGGCGGGAGATGAGTATAGGAGATATGTGTAT  468
            || || || ||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct  294  AA-AA-AAGAAGAAGAAGCGAGACGATTTGGCAGGAGATGAGTATAGGAGATATGTGTAT  351

Query  469  AAGGTGATGAAGCAAGTGCATCCGGATTTAGGTATAACGTCGAAGGCGATGACGGTGGTG  528
            || ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct  352  AAAGTGATGAAGCAAGTGCATCCGGATTTAGGGATAACGTCAAAGGCGATGACGGTAGTG  411

Query  529  AACATGTTCATGGGAGATATGTTCGAGAGGATAGCGCAGGAGGCAGCGAGGTTAAGCGAT  588
            ||||||||||||||||||||||||||||| |||||||||||||  ||||||||||| |||
Sbjct  412  AACATGTTCATGGGAGATATGTTCGAGAGAATAGCGCAGGAGGTGGCGAGGTTAAGTGAT  471

Query  589  TATACAAAGCGGAGGACGTTGTCTTCGAGGGAGATCGAAGCAGCGGTTAGGTTGGTTCTG  648
            ||||| |||||||||| |||||| ||||||||||||||||||||||| ||||||||||| 
Sbjct  472  TATACGAAGCGGAGGATGTTGTCGTCGAGGGAGATCGAAGCAGCGGTGAGGTTGGTTCTC  531

Query  649  CCTGGTGAACTTAGCCGCCACGCTGTCGCTGAAGGCTCTAAAGCTGTTAGTAACT-TCGT  707
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct  532  CCTGGTGAACTTAGCCGCCACGCCGTCGCTGAAGGCTCTAAAGCTGTTAGTAACTAT-GT  590

Query  708  TGGTTATGATAGTAGGAAACGTTAG  732
            |||||||| ||||||||||||||||
Sbjct  591  TGGTTATGGTAGTAGGAAACGTTAG  615


 Score =  329 bits (178),  Expect = 1e-89
 Identities = 202/214 (94%), Gaps = 0/214 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGCCGAGAAAACCAAAGGTTGTTTCCGTGACGAAGAAGAAGAAAGTAGTGGAAGAG  60
            ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGCCGAGAAAACCGAAGGTGGTTTCCGTGACGAAGAAGAAGAAAGTAGTGGAAGAG  60

Query  61   ACAATCAAAGTAACCGTCACGGAAGAAGGAGATCCGTGTGTGATCACCGAGACAGCGAAC  120
            ||||||||||||||||||||||||| || |||||||||||||| |||||||||||| |||
Sbjct  61   ACAATCAAAGTAACCGTCACGGAAGGAGAAGATCCGTGTGTGACCACCGAGACAGCAAAC  120

Query  121  GATCAAGAGACGCAAGATCTCACTTTCTCCATTCCCGTCGGAGAAAACGTTACTACCGTT  180
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct  121  GATCAAGAGACGCAAGATCTCACTTTCTCTATTCCCGTCGGAGAAAACGTTACTACGGTT  180

Query  181  GAGATTCCAGTGGAGGTTCCAGACGAACGGTCAC  214
            |||||||| |||||||||| ||| |||| |||||
Sbjct  181  GAGATTCCGGTGGAGGTTCGAGATGAACAGTCAC  214



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26952902319


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5