BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G08180.1

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919562 jgi|Araly1|919562|scaffold_100843.1                        761    0.0  


> Ahg919562 jgi|Araly1|919562|scaffold_100843.1
Length=504

 Score =  761 bits (412),  Expect = 0.0
 Identities = 480/511 (94%), Gaps = 12/511 (2%)
 Strand=Plus/Plus

Query  26   ACTTTCACATCCATGTGACCATGTCTAAGCTTCTCGAGACCCTagaagaagaaaagacag  85
            ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  1    ACTTTCACATCCATGTGACCATGTCTAAGGTTCTCGAGCCCCTAGAAGAAGAAAAGACAG  60

Query  86   tagagcagaaacccagaagccaagaagaagaagatcatcaagatagc-tcgaagaaagaa  144
            ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct  61   TAGAGCAGAAACCCAGAAGCCAAGAAGAAGAAGATCATCAAGAGA-CATCGAAGAAAGAA  119

Query  145  gaGTTGTTAGAATCTCTGTGTACTCCAACTTCAAGTGATCACAAGATTCCGGAGGTGGAG  204
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  GAGTTGTTAGAATCTTTGTGTACTCCAACTTCAAGTGATCACAAGATTCCGGAGGTGGAG  179

Query  205  ACGTGTCCTCCGCCGCCAAGAAAGCGACCGCGTGAGATTTCTCTCACAAAGAAGACAAGA  264
            || ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct  180  ACATGTCCTCCGCCGCCAAGAAAGCGACCGCGTGAGATTTCTCTGACAAAGAAGAAAAGA  239

Query  265  TTGTCCAAAGATCTTCGGTTCTTTGAAGCCACCGACGTCGGGAGCCAAGAGGTAGAGACT  324
            ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct  240  TTGTCCAAAGATCTTCGGTTCTTCGAAGCCACCGACGTCGGAAGCCAAGAGGTAGAGACT  299

Query  325  TTATTTGTTCACGAACCAAACCATGTCCGTAAGAAACGAAGGAGTAATAGTGCCTGAATC  384
            |||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct  300  TTATTTGTTCACGAACCAAACCATATCCGTAAGAAACGGAGGAGTTATAGTGCCTGAATC  359

Query  385  AAATTTGATTCTGTAGATATACTCTTCTTTCTTTACTTGATTTACACATAATTTTCGATC  444
            |||||||||||||||||||||||||||||||||||| |  || ||||||||||||| |||
Sbjct  360  AAATTTGATTCTGTAGATATACTCTTCTTTCTTTACCT--TT-ACACATAATTTTCAATC  416

Query  445  ACTTTTATATAC--CT-ATTTTAATAAATCTTTAGTCCGAATTCGTATTTTCTT-ATGGG  500
             |||| ||||||  || ||| |||||| |||||||||||||||||| ||| ||| |||||
Sbjct  417  GCTTT-ATATACAACTTATTATAATAA-TCTTTAGTCCGAATTCGTGTTT-CTTTATGGG  473

Query  501  ATTTTAACTCTGGTTCTGTACATGATTTTGT  531
            |||||||||||| || |||||||||||||||
Sbjct  474  ATTTTAACTCTGCTTGTGTACATGATTTTGT  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20069839814


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5