BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08180.1 Length=550 Score E Sequences producing significant alignments: (Bits) Value Ahg919562 jgi|Araly1|919562|scaffold_100843.1 761 0.0 > Ahg919562 jgi|Araly1|919562|scaffold_100843.1 Length=504 Score = 761 bits (412), Expect = 0.0 Identities = 480/511 (94%), Gaps = 12/511 (2%) Strand=Plus/Plus Query 26 ACTTTCACATCCATGTGACCATGTCTAAGCTTCTCGAGACCCTagaagaagaaaagacag 85 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1 ACTTTCACATCCATGTGACCATGTCTAAGGTTCTCGAGCCCCTAGAAGAAGAAAAGACAG 60 Query 86 tagagcagaaacccagaagccaagaagaagaagatcatcaagatagc-tcgaagaaagaa 144 ||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| Sbjct 61 TAGAGCAGAAACCCAGAAGCCAAGAAGAAGAAGATCATCAAGAGA-CATCGAAGAAAGAA 119 Query 145 gaGTTGTTAGAATCTCTGTGTACTCCAACTTCAAGTGATCACAAGATTCCGGAGGTGGAG 204 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GAGTTGTTAGAATCTTTGTGTACTCCAACTTCAAGTGATCACAAGATTCCGGAGGTGGAG 179 Query 205 ACGTGTCCTCCGCCGCCAAGAAAGCGACCGCGTGAGATTTCTCTCACAAAGAAGACAAGA 264 || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 180 ACATGTCCTCCGCCGCCAAGAAAGCGACCGCGTGAGATTTCTCTGACAAAGAAGAAAAGA 239 Query 265 TTGTCCAAAGATCTTCGGTTCTTTGAAGCCACCGACGTCGGGAGCCAAGAGGTAGAGACT 324 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 240 TTGTCCAAAGATCTTCGGTTCTTCGAAGCCACCGACGTCGGAAGCCAAGAGGTAGAGACT 299 Query 325 TTATTTGTTCACGAACCAAACCATGTCCGTAAGAAACGAAGGAGTAATAGTGCCTGAATC 384 |||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| Sbjct 300 TTATTTGTTCACGAACCAAACCATATCCGTAAGAAACGGAGGAGTTATAGTGCCTGAATC 359 Query 385 AAATTTGATTCTGTAGATATACTCTTCTTTCTTTACTTGATTTACACATAATTTTCGATC 444 |||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||| Sbjct 360 AAATTTGATTCTGTAGATATACTCTTCTTTCTTTACCT--TT-ACACATAATTTTCAATC 416 Query 445 ACTTTTATATAC--CT-ATTTTAATAAATCTTTAGTCCGAATTCGTATTTTCTT-ATGGG 500 |||| |||||| || ||| |||||| |||||||||||||||||| ||| ||| ||||| Sbjct 417 GCTTT-ATATACAACTTATTATAATAA-TCTTTAGTCCGAATTCGTGTTT-CTTTATGGG 473 Query 501 ATTTTAACTCTGGTTCTGTACATGATTTTGT 531 |||||||||||| || ||||||||||||||| Sbjct 474 ATTTTAACTCTGCTTGTGTACATGATTTTGT 504 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20069839814 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5