BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08200.1
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470881 jgi|Araly1|470881|fgenesh2_kg.1__835__AT1G08200.1 2427 0.0
Ahg481719 jgi|Araly1|481719|fgenesh2_kg.4__779__AT2G27860.1 1426 0.0
> Ahg470881 jgi|Araly1|470881|fgenesh2_kg.1__835__AT1G08200.1
Length=1623
Score = 2427 bits (1314), Expect = 0.0
Identities = 1512/1601 (94%), Gaps = 39/1601 (2%)
Strand=Plus/Plus
Query 79 ACGCGTGTTCACCGACACAATC-AAAATATGGCGAACGGAGCCGATAGATTGGATCTGGA 137
|||||| ||||||||||||| | |||| ||||| |||||||||| | |||||||||||||
Sbjct 55 ACGCGTATTCACCGACACAA-CGAAAA-ATGGCTAACGGAGCCGGTCGATTGGATCTGGA 112
Query 138 CGGTAAACCGATTAAGCCGATGACGATATGCATGATCGGTGCCGGAGGTTTCATTGGCTC 197
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 113 CGGTAAACCGATTAAGCCGATTACGATATGCATGATCGGCGCCGGAGGTTTCATTGGCTC 172
Query 198 TCATCTCTGTGAGAAGCTTATGACGGAGACTCCTCACAAGGTTCTTGCGCTTGATGTTTA 257
|||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 173 TCATCTCTGTGAGAAGCTAATGACGGAGACTCCTCACAAGGTGCTCGCGCTCGATGTCTA 232
Query 258 CAATGATAAGATCAAGCACTTGCTTGAGCCTGATACCGTTCAATGGGCTGGTCGGATCCA 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 CAATGATAAGATCAAGCACTTGCTTGAGCCTGATACCGTTCAATGGGCTGGTCGGATCCA 292
Query 318 GTTTCATCGTATCAACATTAAGCATGATTCTAGACTTGAAGGACTGATCAAGATGGCAGA 377
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 293 GTTTCATCGTATCAACATTAAGCATGATTCTAGACTCGAAGGACTGATCAAGATGGCAGA 352
Query 378 TCTGACGATAAATCTAGCTGCGATCTGTACTCCAGCAGATTACAATACGCGTCCTCTTGA 437
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 353 TCTGACGATAAATCTAGCTGCGATCTGTACTCCAGCGGATTACAATACGCGTCCTCTTGA 412
Query 438 CACTATCTACAGCAATTTCATTGATGCTCTCCCAGTGGTTAAATACTGCTCAGAGAACAA 497
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 413 CACTATCTACAGCAATTTCATTGATGCTCTCCCAGTGGTTAAGTACTGCTCTGAGAACAA 472
Query 498 CAAGCGTCTGATTCACTTTTCCACTTGTGAAGTGTATGGAAAAACTATAGGAAGCTTTCT 557
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 473 CAAGCGTCTGATTCACTTTTCCACTTGTGAAGTCTATGGAAAAACTATAGGAAGCTTTCT 532
Query 558 TCCAAAGGATCATCCTCTGCGTCAGGATCCTGAATTTTATGTACTCAAAGAAGATATATC 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TCCAAAGGATCATCCTCTGCGTCAGGATCCTGAATTTTATGTACTCAAAGAAGATATATC 592
Query 618 CCCTTGCATCTTTGGTTCAATTGAGAAGCAGAGGTGGTCATATGCTTGTGCAAAGCAACT 677
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 593 CCCTTGCATTTTTGGTTCTATTGAGAAGCAGAGGTGGTCATATGCATGTGCAAAGCAACT 652
Query 678 TATTGAGAGACTTGTTTACGCTGAGGGTGCTGAGAATGGACTCGAGTTCACCATTGTAAG 737
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 653 TATTGAGAGACTTGTTTATGCTGAGGGTGCTGAGAATGGGCTCGAGTTCACCATTGTAAG 712
Query 738 ACCATTCAACTGGATTGGACCTAGGATGGATTTCATCCCTGGCATTGATGGTCCTAGCGA 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 ACCATTCAACTGGATTGGACCTAGGATGGATTTCATCCCTGGCATTGATGGTCCTAGCGA 772
Query 798 GGGTGTCCCACGGGTTCTAGCGTGCTTTAGTAACAATCTTCTGCGACGGGAGCCTCTCAA 857
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 773 GGGTGTCCCTCGGGTCCTAGCGTGCTTTAGTAACAACCTTCTGCGACGGGAGCCTCTCAA 832
Query 858 GCTTGTGGATGGTGGAGAATCACAGAGAACCTTCATCTACATCAAAGATGCTATCGAAGC 917
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 833 GCTTGTGGATGGTGGAGAATCACAGAGAACCTTCATCTACATCAAAGATGCTATTGAAGC 892
Query 918 TGTCCTTTTGATGATCGAAAATCCAGAGAGAGCCAATGGGCATATCTTCAATGTAGGCAA 977
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 893 TGTCCTTTTGATGATTGAAAACCCAGAGAGAGCCAATGGGCATATCTTCAATGTAGGCAA 952
Query 978 CCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAGGTCTACGCCAA 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 953 CCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAGGTCTACGCAAA 1012
Query 1038 AGTGAGTGGAGAGACAGCTATCGAGAGTCCAACGATCGACGTGAGCTCCAAAGAGTTTTA 1097
|||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||
Sbjct 1013 AGTGAGTGGAGAGACAGCCATCGAGAGCCCAACGATCGATGTGAGCTCCAAAGAATTTTA 1072
Query 1098 TGGAGAAGGTTATGATGACAGCGACAAGAGAATCCCAGACATGACCATCATCAACCGTCA 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TGGAGAAGGTTATGATGACAGCGACAAGAGAATCCCAGACATGACCATCATCAACCGTCA 1132
Query 1158 ACTTGGATGGAACCCGAAGACGTCGCTTTGGGACTTGCTTGAATCGACCTTAACATACCA 1217
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1133 ACTTGGATGGAACCCGAAGACTTCGCTTTGGGACTTGCTTGAGTCGACCTTAACATACCA 1192
Query 1218 GCACACGACTTATGCGGAAGCCATTAAGAAGGCCACTTCAAAACCAGTCGCATCTTAGAG 1277
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 GCACACGACATATGCGGAAGCCATTAAGAAGGCCACTTCAAAACCAGTCGCATCTTAGAG 1252
Query 1278 GTCGTCTCTCTTTACAAACACCTCAAATCATGTGGTGGCTACGATTCCATTCTTTCTTTT 1337
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 GTCGTCTCTCTT-ACAAACACCTCAAATCATGTGGTGGCTACGATTCCATTCTTT----- 1306
Query 1338 TaaaaaaaaaaTTCTCCCAACAGAAACCTTCTCTTCCCTTATTTTAGGCCATT-CTAAAC 1396
|| ||||||||||||||||||| ||||||||||| |||||| ||| |||| |
Sbjct 1307 -AA--------TTCTCCCAACAGAAACCTTTTCTTCCCTTATGTTAGGCAATTTCTAAGC 1357
Query 1397 AAATGATATATCATGGTGGTTGATTCTAGTTTACGTTTTCCTTGTTATATAGTATTACTG 1456
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 AAATGATATATCACGGTGGTTGATTCTAGTTTACGTTTTCCTTGTTATATAGTATTACTG 1417
Query 1457 TTAATGTTTTTGAATTCCTTTGTTTTGAAGCTTTATATCTTGTATTTGTCCGAAACTAAA 1516
||||||||| | || | |||||||||||||||||||||||||||||||||
Sbjct 1418 TTAATGTTT--G--TT-----G-----AAGCTTTATATCTTGTATTTGTCCGAAACTAAA 1463
Query 1517 AAGGGAATGGTTTGTGCAAACTATAACATTGGGGCTTTCTTTATATGTTACATATCTTT- 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1464 AAGGGAATGGTTTGTGCAAACTATAACATTGGGGCTTTCTTTATATGTTACATATATTTT 1523
Query 1576 -GGCGGATTCCACACTTCACTTCT---ATATCTGCCTGGTTGTAATAAACGAGTTAGTTT 1631
|||||||||||||||| |||||| ||||||| || ||| ||||| |||||| ||||
Sbjct 1524 TGGCGGATTCCACACTTTACTTCTTCTATATCTGTCTAATTGGAATAAGCGAGTTCGTTT 1583
Query 1632 GGCTTTTGCTCGTGTTGCTGTGTTATGTGAATATATACCTT 1672
|||||||||| ||||||||| ||| ||||||||||||||||
Sbjct 1584 GGCTTTTGCTTGTGTTGCTG-GTTTTGTGAATATATACCTT 1623
> Ahg481719 jgi|Araly1|481719|fgenesh2_kg.4__779__AT2G27860.1
Length=1398
Score = 1426 bits (772), Expect = 0.0
Identities = 1038/1169 (89%), Gaps = 8/1169 (1%)
Strand=Plus/Plus
Query 101 AAAATATGGCGAACGGAGCCGATAGATTGGATCTGGACGGTAAACCGATTAAGCCGATGA 160
|||| |||||||||||||| ||||| ||||||| ||||| |||||||| || ||||| |
Sbjct 59 AAAAAATGGCGAACGGAGCTAATAGAGTGGATCTAGACGGAAAACCGATAAAACCGATCA 118
Query 161 CGATATGCATGATCGGTGCCGGAGGTTTCATTGGCTCTCATCTCTGTGAGAAGCTTATGA 220
| |||||||||||||| |||||||||||||| || || ||||||||||| || || ||||
Sbjct 119 CAATATGCATGATCGGAGCCGGAGGTTTCATCGGTTCACATCTCTGTGAAAAACTGATGA 178
Query 221 CGGAGACTCCTCACAAGGTTCTTGCGCTTGATGTTTACAATGATAAGATCAAGCACTTGC 280
||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 179 CGGAGACGCCTCACAAGGTGCTTGCGCTTGATGTTTACAACGATAAGATCAAACACTTGC 238
Query 281 TTGAGCCTGATACCGTTCAATGG-GCTGGTCGGATCCAGTTTCATCGTATCAACATTAAG 339
||||||| ||| ||||| ||||| | ||||||||||||||||||||||||||| || |||
Sbjct 239 TTGAGCCAGATTCCGTTGAATGGAG-TGGTCGGATCCAGTTTCATCGTATCAATATCAAG 297
Query 340 CATGATTCTAGACTTGAAGGACTGATCAAGATGGCAGATCTGACGATAAATCTAGCTGCG 399
|||||||| || |||||||| || || |||||||| |||||||| |||||||| ||||||
Sbjct 298 CATGATTCGAGGCTTGAAGGTCTTATTAAGATGGCGGATCTGACTATAAATCTTGCTGCG 357
Query 400 ATCTGTACTCCAGCAGATTACAATACGCGTCCTCTTGACACTATCTACAGCAATTTCATT 459
|||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 358 ATCTGTACTCCAGCTGATTACAATACACGTCCTCTTGATACAATCTACAGCAATTTCATT 417
Query 460 GATGCTCTCCCAGTGGTTAAATACTGCTCAGAGAACAACAAGCGTCTGATTCACTTTTCC 519
||||| || ||||| ||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 418 GATGCGCTTCCAGTTGTTAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCT 477
Query 520 ACTTGTGAAGTGTATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGT 579
|| |||||||||||||||||||| || || ||||||||||| ||||||||||||||||||
Sbjct 478 ACCTGTGAAGTGTATGGAAAAACCATTGGTAGCTTTCTTCCTAAGGATCATCCTCTGCGT 537
Query 580 CAGGATCCTGAATTT-TATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGTTCAAT 638
||||||||| ||| ||||| || ||||||||||| ||||||||||| |||||||||||
Sbjct 538 GAGGATCCTG-CTTTCTATGTTCTTAAAGAAGATATTTCCCCTTGCATATTTGGTTCAAT 596
Query 639 TGAGAAGCAGAGGTGGTCATATGCTTGTGCAAAGCAACTTATTGAGAGACTTGTTTACGC 698
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 597 TGAGAAGCAGAGGTGGTCATATGCGTGTGCAAAGCAACTGATTGAGAGACTTGTTTACGC 656
Query 699 TGAGGGTGCTGAGAATGGACTCGAGTTCACCATTGTAAGACCATTCAACTGGATTGGACC 758
||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct 657 TGAGGGTGCTGAGAATGGACTTGAGTTCACTATTGTAAGACCTTTTAACTGGATTGGACC 716
Query 759 TAGGATGGATTTCATCCCTGGCATTGATGGTCCTAGCGAGGGTGTCCCACGGGTTCTAGC 818
|||||||||||||||||| |||||||||||||||||||| ||||||||||| || || ||
Sbjct 717 TAGGATGGATTTCATCCCCGGCATTGATGGTCCTAGCGAAGGTGTCCCACGTGTCCTTGC 776
Query 819 GTGCTTTAGTAACAATCTTCTGCGACGGGAGCCTCTCAAGCTTGTGGATGGTGGAGAATC 878
|| |||||||| |||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 777 CTGTTTTAGTAATAATCTTCTACGTCGTGAGCCTCTCAAGCTTGTGGATGGTGGAGAATC 836
Query 879 ACAGAGAACCTTCATCTACATCAAAGATGCTATCGAAGCTGTCCTTTTGATGATCGAAAA 938
||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 837 ACAGAGAACTTTCATCTACATCAAGGATGCTATCGAAGCTGTCCTTTTGATGATTGAAAA 896
Query 939 TCCAGAGAGAGCCAATGGGCATATCTTCAATGTAGGCAACCCAAACAATGAAGTGACAGT 998
|||||||| || ||||| |||||||||||||| ||||| || ||||| ||||| |||||
Sbjct 897 CCCAGAGAGGGCAAATGGCCATATCTTCAATGTGGGCAATCCGAACAACGAAGTTACAGT 956
Query 999 GA-GACAACTTGCTGAAATGATGACTGAGGTCTACGCCAAAGTGAGTGGAGA-GACAGCT 1056
| |||| || |||||||||||||||||||| ||||| |||||||||||||| | |||
Sbjct 957 -ACGACAGCTAGCTGAAATGATGACTGAGGTTTACGCAAAAGTGAGTGGAGAAGG-AGCC 1014
Query 1057 ATCGAGAGTCCAACGATCGACGTGAGCTCCAAAGAGTTTTATGGAGAAGGTTATGATGAC 1116
|| ||||| || ||| | || || ||||||||||||||||| || |||||||||||||||
Sbjct 1015 ATTGAGAGCCCGACGGTTGATGTTAGCTCCAAAGAGTTTTACGGGGAAGGTTATGATGAC 1074
Query 1117 AGCGACAAGAGAATCCCAGACATGACCATCATCAACCGTCAACTTGGATGGAACCCGAAG 1176
|| ||||||||||||||||||||||||||||| ||||| || || ||||||||||||||
Sbjct 1075 AGTGACAAGAGAATCCCAGACATGACCATCATTAACCGCCAGCTCGGATGGAACCCGAAA 1134
Query 1177 ACGTCGCTTTGGGACTTGCTTGAATCGACCTTAACATACCAGCACACGACTTATGCGGAA 1236
|| ||||| ||||||||||| || ||||||||||| || ||||||| ||| || || |||
Sbjct 1135 ACATCGCTGTGGGACTTGCTCGAGTCGACCTTAACCTATCAGCACAGGACCTACGCTGAA 1194
Query 1237 GCCATTAAGAAGGCCACTTCAAAACCAGT 1265
|| | ||||| || || || ||||||||
Sbjct 1195 GCTGTGAAGAAAGCAACATCCAAACCAGT 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63229806700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5