BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08210.1
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470882 jgi|Araly1|470882|fgenesh2_kg.1__836__AT1G08210.1 2606 0.0
> Ahg470882 jgi|Araly1|470882|fgenesh2_kg.1__836__AT1G08210.1
Length=1645
Score = 2606 bits (1411), Expect = 0.0
Identities = 1572/1649 (95%), Gaps = 14/1649 (1%)
Strand=Plus/Plus
Query 18 ATATTATCAGAACGTTTCAATTGGCGGC-TT-TCTCTCTCTTTCCCCAGGAAGAGAAAGT 75
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 1 ATATTATCAGAACGTTTCAGTTGGCGGCTTTCTCTCTCTCTTTCCCCAGGAAGAGAAAGT 60
Query 76 TCGAACTCCAGAAATGGCGGTGGATTCTCCCGCTGGAGTTATTATCATCGCCGCCGTGCT 135
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||| |||||||
Sbjct 61 TCGAACTCGAGAAATGGCGGTGGATTCTCCTGCTGGAGTTATCATCATCGCCACCGTGCT 120
Query 136 TTTACTTGCTGCGACAACCTTGGCCTGCGGCTCCGACGCGGTTCTCAAGCTGGAGAGATT 195
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTACATGCTGTGACAACCTTGGTCTGCGGCTCCGACGCGGTTCTCAAGCTGGAGAGATT 180
Query 196 GATTCCGCCGAACCATGAACTTGGTCTGACTGAGCTCAGGGCTTTTGATTCAGCTCGCCA 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATTCCGCCGAACCATGAACTTGGTCTGACTGAGCTCAGGGCTTTTGATTCAGCTCGCCA 240
Query 256 TGGAAGGTTATTGCAGTCTCCTGTCGGCGGTGTTGTTAATTTCCCGGTTGATGGAGCCTC 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGAAGGTTATTGCAGTCTCCTGTCGGCGGTGTTGTTAATTTCCCGGTTGATGGAGCCTC 300
Query 316 CGATCCGTTTCTCGTCGGGCTTTACTACACAAAGGTTAAACTTGGGACACCACCAAGAGA 375
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 301 CGATCCGTTTCTCGTTGGGCTTTACTACACAAAGGTTAAACTTGGGACACCCCCTAGAGA 360
Query 376 ATTTAATGTTCAAATTGACACTGGAAGTGATGTTTTGTGGGTTAGCTGCACTTCCTGCAA 435
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 ATTTAATGTGCAAATTGATACTGGAAGTGATGTTTTATGGGTTAGCTGCACTTCCTGCAA 420
Query 436 TGGCTGCCCCAAGACTAGCGAACTCCAAATTCAACTAAGTTTCTTTGATCCTGGAGTGTC 495
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGCTGCCCCAAGACTAGTGAACTCCAAATTCAACTAAGTTTCTTTGATCCTGGAGTGTC 480
Query 496 ATCCTCAGCTTCATTAGTTTCATGTTCAGACAGGAGATGTTACTCAAATTTCCAGACAGA 555
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCCTCGGCTTCATTAGTTTCATGTTCAGACAGGAGATGTTACTCAAATTTCCAGACAGA 540
Query 556 ATCAGGCTGTTCTCCCAACAATCTCTGTTCCTATTCGTTTAAGTACGGTGATGGAAGTGG 615
|| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 541 GTCGGGCTGTTCTCCCAACAATCTTTGTTCCTATTCGTTTAAGTATGGTGATGGAAGTGG 600
Query 616 CACTTCTGGTTACTACATCTCAGATTTCATGTCCTTTGATACTGTTATTACCAGTACCTT 675
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CACTTCTGGTTTCTACATCTCAGATTTCATGTCCTTTGATACTGTTATTACCAGTACCTT 660
Query 676 GGCTATAAATTCCTCTGCTCCCTTTGTTTTTGGGTGTAGCAATTTACAATCTGGAGATTT 735
||||||||||||||||||||||||||| || |||||||||||||||||| | || |||||
Sbjct 661 GGCTATAAATTCCTCTGCTCCCTTTGTCTTCGGGTGTAGCAATTTACAAACCGGTGATTT 720
Query 736 ACAGAGGCCTAGAAGAGCAGTAGATGGCATCTTTGGGTTAGGACAAGGGAGTTTATCAGT 795
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 721 ACAGAGACCTAGAAGAGCAGTAGATGGCATCTTTGGGTTAGGACAAGGGAGTTTATCTGT 780
Query 796 AATTTCTCAGCTTGCTGTGCAAGGACTCGCGCCACGAGTATTCTCGCATTGTCTGAAGGG 855
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 781 AATTTCACAGCTTGCTGTGCAAGGACTTGCGCCACGAGTATTCTCGCACTGTCTGAAGGG 840
Query 856 AGATAAAAGCGGTGGAGGTATAATGGTTCTAGGTCAAATCAAGAGGCCAGATACCGTCTA 915
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 841 AGATAAAAGCGGTGGAGGTATAATGGTTCTAGGTCAAATTAAGAGGCCAGATACCGTGTA 900
Query 916 TACTCCTCTTGTTCCATCACAGCCACATTATAATGTGAACCTGCAGAGCATTGCTGTGAA 975
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TACCCCTCTCGTTCCATCACAGCCACATTATAATGTGAACCTGCAGAGCATTGCTGTGAA 960
Query 976 CGGTCAGATATTACCGATTGATCCATCTGTTTTCACAATAGCCACTGGTGATGGAACGAT 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CGGTCAGATATTACCGATTGATCCATCTGTTTTCACAATAGCCACTGGTGATGGAACGAT 1020
Query 1036 AATTGATACGGGAACGACTCTTGCTTATCTTCCCGACGAAGCTTATAGTCCATTCATCCA 1095
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AATTGATACGGGGACGACTCTTGCTTATCTTCCCGACGAAGCTTATAGTCCATTCATCCA 1080
Query 1096 AGCTGTTGCAAATGCTGTTTCGCAGTACGGGCGTCCCATTACCTATGAGAGTTACCAATG 1155
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1081 AGCTATTGCAAATGCTGTTTCGCAGTACGGGCGTCCCATTACTTATGAGAGTTACCAGTG 1140
Query 1156 CTTTGAAATCACAGCTGGTGACGTTGATGTCTTTCCCCAAGTTAGTTTGAGCTTTGCTGG 1215
|||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1141 CTTTGATATCACAGCTGGTGACGTTGATGTCTTTCCCGAAGTGAGTTTGAGCTTTGCTGG 1200
Query 1216 TGGTGCATCAATGGTCTTAGGACCCCGTGCATATCTTCAGATTTTTTCTAGTTCAGGAAG 1275
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1201 TGGTGCATCAATGGTCTTAAGACCCCGTGCGTATCTTCAGATTTTTTCTAGTTCAGGAAG 1260
Query 1276 TTCAATATGGTGCATTGGTTTCCAGAGAATGTCTCATCGTCGTATAACAATTCTTGGTGA 1335
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 1261 TTCAATATGGTGCATTGGTTTCCAGAGAATGTCACATCGTCGCATAACAATTCTTGGCGA 1320
Query 1336 TTTGGTTCTTAAAGACAAAGTGGTGGTCTACGATCTAGTTCGCCAACGTATTGGATGGGC 1395
||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||
Sbjct 1321 TTTGGTTCTTAAAGACAAAGTTGTCGTCTACGATCTTGTTCGCCAGCGTATTGGATGGGC 1380
Query 1396 AGAATACGACTGTTCTCTGGAGGTGAATGTTTCAGCATCAAGAGGAGGACGAAGCAAAGA 1455
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1381 AGAATACGACTGTTCTCTGGAGGTGAACGTTTCAGCATCAAGAGGAGGACGAAGCAAAGA 1440
Query 1456 CGTTATAAACACAGGACAATGGAGAGAAAGCGGTTCGGAGAGTTTTAATAGAAGTTATTA 1515
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 1441 CGTTATAAACACAGGACAATGGAGAGAGAGCGGTTCAGAGAGTTTCAATAGAAGTTATTA 1500
Query 1516 ---CTTGTTACAACTAGTAGTCTTCCTTGTCCACCTTTTTGCTCGTTTCTTGTAGTAGCT 1572
||||||||||| | |||||||||| |||| ||||||||||| || || | ||||||
Sbjct 1501 TTACTTGTTACAACAACTAGTCTTCCTCCTCCATCTTTTTGCTCGCTT-TT-T-GTAGCT 1557
Query 1573 TTTAGCATTCACTCCACCA---ATTATGGTTGGACTTT-GTAAGCTTATATTATTGTAAT 1628
| ||||||||||||||||| |||||||||||||||| |||||||||| | ||||||||
Sbjct 1558 TCTAGCATTCACTCCACCACCTATTATGGTTGGACTTTTGTAAGCTTAT-T-ATTGTAAT 1615
Query 1629 TTAATCACACTAATTAATTCTTACTTACC 1657
||||||| |||||||||||||||||||||
Sbjct 1616 TTAATCATACTAATTAATTCTTACTTACC 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62468001800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5