BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08210.1 Length=1666 Score E Sequences producing significant alignments: (Bits) Value Ahg470882 jgi|Araly1|470882|fgenesh2_kg.1__836__AT1G08210.1 2606 0.0 > Ahg470882 jgi|Araly1|470882|fgenesh2_kg.1__836__AT1G08210.1 Length=1645 Score = 2606 bits (1411), Expect = 0.0 Identities = 1572/1649 (95%), Gaps = 14/1649 (1%) Strand=Plus/Plus Query 18 ATATTATCAGAACGTTTCAATTGGCGGC-TT-TCTCTCTCTTTCCCCAGGAAGAGAAAGT 75 ||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| Sbjct 1 ATATTATCAGAACGTTTCAGTTGGCGGCTTTCTCTCTCTCTTTCCCCAGGAAGAGAAAGT 60 Query 76 TCGAACTCCAGAAATGGCGGTGGATTCTCCCGCTGGAGTTATTATCATCGCCGCCGTGCT 135 |||||||| ||||||||||||||||||||| ||||||||||| ||||||||| ||||||| Sbjct 61 TCGAACTCGAGAAATGGCGGTGGATTCTCCTGCTGGAGTTATCATCATCGCCACCGTGCT 120 Query 136 TTTACTTGCTGCGACAACCTTGGCCTGCGGCTCCGACGCGGTTCTCAAGCTGGAGAGATT 195 ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 121 TTTACATGCTGTGACAACCTTGGTCTGCGGCTCCGACGCGGTTCTCAAGCTGGAGAGATT 180 Query 196 GATTCCGCCGAACCATGAACTTGGTCTGACTGAGCTCAGGGCTTTTGATTCAGCTCGCCA 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GATTCCGCCGAACCATGAACTTGGTCTGACTGAGCTCAGGGCTTTTGATTCAGCTCGCCA 240 Query 256 TGGAAGGTTATTGCAGTCTCCTGTCGGCGGTGTTGTTAATTTCCCGGTTGATGGAGCCTC 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TGGAAGGTTATTGCAGTCTCCTGTCGGCGGTGTTGTTAATTTCCCGGTTGATGGAGCCTC 300 Query 316 CGATCCGTTTCTCGTCGGGCTTTACTACACAAAGGTTAAACTTGGGACACCACCAAGAGA 375 ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| Sbjct 301 CGATCCGTTTCTCGTTGGGCTTTACTACACAAAGGTTAAACTTGGGACACCCCCTAGAGA 360 Query 376 ATTTAATGTTCAAATTGACACTGGAAGTGATGTTTTGTGGGTTAGCTGCACTTCCTGCAA 435 ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 361 ATTTAATGTGCAAATTGATACTGGAAGTGATGTTTTATGGGTTAGCTGCACTTCCTGCAA 420 Query 436 TGGCTGCCCCAAGACTAGCGAACTCCAAATTCAACTAAGTTTCTTTGATCCTGGAGTGTC 495 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TGGCTGCCCCAAGACTAGTGAACTCCAAATTCAACTAAGTTTCTTTGATCCTGGAGTGTC 480 Query 496 ATCCTCAGCTTCATTAGTTTCATGTTCAGACAGGAGATGTTACTCAAATTTCCAGACAGA 555 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ATCCTCGGCTTCATTAGTTTCATGTTCAGACAGGAGATGTTACTCAAATTTCCAGACAGA 540 Query 556 ATCAGGCTGTTCTCCCAACAATCTCTGTTCCTATTCGTTTAAGTACGGTGATGGAAGTGG 615 || |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 541 GTCGGGCTGTTCTCCCAACAATCTTTGTTCCTATTCGTTTAAGTATGGTGATGGAAGTGG 600 Query 616 CACTTCTGGTTACTACATCTCAGATTTCATGTCCTTTGATACTGTTATTACCAGTACCTT 675 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CACTTCTGGTTTCTACATCTCAGATTTCATGTCCTTTGATACTGTTATTACCAGTACCTT 660 Query 676 GGCTATAAATTCCTCTGCTCCCTTTGTTTTTGGGTGTAGCAATTTACAATCTGGAGATTT 735 ||||||||||||||||||||||||||| || |||||||||||||||||| | || ||||| Sbjct 661 GGCTATAAATTCCTCTGCTCCCTTTGTCTTCGGGTGTAGCAATTTACAAACCGGTGATTT 720 Query 736 ACAGAGGCCTAGAAGAGCAGTAGATGGCATCTTTGGGTTAGGACAAGGGAGTTTATCAGT 795 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 721 ACAGAGACCTAGAAGAGCAGTAGATGGCATCTTTGGGTTAGGACAAGGGAGTTTATCTGT 780 Query 796 AATTTCTCAGCTTGCTGTGCAAGGACTCGCGCCACGAGTATTCTCGCATTGTCTGAAGGG 855 |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 781 AATTTCACAGCTTGCTGTGCAAGGACTTGCGCCACGAGTATTCTCGCACTGTCTGAAGGG 840 Query 856 AGATAAAAGCGGTGGAGGTATAATGGTTCTAGGTCAAATCAAGAGGCCAGATACCGTCTA 915 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 841 AGATAAAAGCGGTGGAGGTATAATGGTTCTAGGTCAAATTAAGAGGCCAGATACCGTGTA 900 Query 916 TACTCCTCTTGTTCCATCACAGCCACATTATAATGTGAACCTGCAGAGCATTGCTGTGAA 975 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 TACCCCTCTCGTTCCATCACAGCCACATTATAATGTGAACCTGCAGAGCATTGCTGTGAA 960 Query 976 CGGTCAGATATTACCGATTGATCCATCTGTTTTCACAATAGCCACTGGTGATGGAACGAT 1035 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 CGGTCAGATATTACCGATTGATCCATCTGTTTTCACAATAGCCACTGGTGATGGAACGAT 1020 Query 1036 AATTGATACGGGAACGACTCTTGCTTATCTTCCCGACGAAGCTTATAGTCCATTCATCCA 1095 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 AATTGATACGGGGACGACTCTTGCTTATCTTCCCGACGAAGCTTATAGTCCATTCATCCA 1080 Query 1096 AGCTGTTGCAAATGCTGTTTCGCAGTACGGGCGTCCCATTACCTATGAGAGTTACCAATG 1155 |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 1081 AGCTATTGCAAATGCTGTTTCGCAGTACGGGCGTCCCATTACTTATGAGAGTTACCAGTG 1140 Query 1156 CTTTGAAATCACAGCTGGTGACGTTGATGTCTTTCCCCAAGTTAGTTTGAGCTTTGCTGG 1215 |||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 1141 CTTTGATATCACAGCTGGTGACGTTGATGTCTTTCCCGAAGTGAGTTTGAGCTTTGCTGG 1200 Query 1216 TGGTGCATCAATGGTCTTAGGACCCCGTGCATATCTTCAGATTTTTTCTAGTTCAGGAAG 1275 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 1201 TGGTGCATCAATGGTCTTAAGACCCCGTGCGTATCTTCAGATTTTTTCTAGTTCAGGAAG 1260 Query 1276 TTCAATATGGTGCATTGGTTTCCAGAGAATGTCTCATCGTCGTATAACAATTCTTGGTGA 1335 ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || Sbjct 1261 TTCAATATGGTGCATTGGTTTCCAGAGAATGTCACATCGTCGCATAACAATTCTTGGCGA 1320 Query 1336 TTTGGTTCTTAAAGACAAAGTGGTGGTCTACGATCTAGTTCGCCAACGTATTGGATGGGC 1395 ||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||| Sbjct 1321 TTTGGTTCTTAAAGACAAAGTTGTCGTCTACGATCTTGTTCGCCAGCGTATTGGATGGGC 1380 Query 1396 AGAATACGACTGTTCTCTGGAGGTGAATGTTTCAGCATCAAGAGGAGGACGAAGCAAAGA 1455 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1381 AGAATACGACTGTTCTCTGGAGGTGAACGTTTCAGCATCAAGAGGAGGACGAAGCAAAGA 1440 Query 1456 CGTTATAAACACAGGACAATGGAGAGAAAGCGGTTCGGAGAGTTTTAATAGAAGTTATTA 1515 ||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| Sbjct 1441 CGTTATAAACACAGGACAATGGAGAGAGAGCGGTTCAGAGAGTTTCAATAGAAGTTATTA 1500 Query 1516 ---CTTGTTACAACTAGTAGTCTTCCTTGTCCACCTTTTTGCTCGTTTCTTGTAGTAGCT 1572 ||||||||||| | |||||||||| |||| ||||||||||| || || | |||||| Sbjct 1501 TTACTTGTTACAACAACTAGTCTTCCTCCTCCATCTTTTTGCTCGCTT-TT-T-GTAGCT 1557 Query 1573 TTTAGCATTCACTCCACCA---ATTATGGTTGGACTTT-GTAAGCTTATATTATTGTAAT 1628 | ||||||||||||||||| |||||||||||||||| |||||||||| | |||||||| Sbjct 1558 TCTAGCATTCACTCCACCACCTATTATGGTTGGACTTTTGTAAGCTTAT-T-ATTGTAAT 1615 Query 1629 TTAATCACACTAATTAATTCTTACTTACC 1657 ||||||| ||||||||||||||||||||| Sbjct 1616 TTAATCATACTAATTAATTCTTACTTACC 1644 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62468001800 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5