BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08220.1
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470883 jgi|Araly1|470883|fgenesh2_kg.1__837__AT1G08220.1 1500 0.0
> Ahg470883 jgi|Araly1|470883|fgenesh2_kg.1__837__AT1G08220.1
Length=1043
Score = 1500 bits (812), Expect = 0.0
Identities = 934/992 (94%), Gaps = 12/992 (1%)
Strand=Plus/Plus
Query 1 CATAACCAAACAAATAGGGTTTAAGCTCTACTAAAATGGCGACGACGTTGAATCGAATCC 60
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1 CATAACCAACCAAATAGGGTTTAAGCTCTTCTAAAATGGCGACGACGTTGAATCGATTCC 60
Query 61 TGAAGCATAGATCAGTCTCTGCTC-TCAACAAGCATCATCAAGGACTCTTCTCCCT-CAC 118
||||||| || ||||||||||| | ||||||||||||||||||||||||||| ||| |||
Sbjct 61 TGAAGCACAGGTCAGTCTCTGC-CATCAACAAGCATCATCAAGGACTCTTCT-CCTCCAC 118
Query 119 TCGATACGAGAATCATGACTCTCTCCCTTCTCAAATGCCAGCTCTTCGATCAACCACCCG 178
||| ||||||||||||||||||||| |||| ||||||| |||||||||||| |||||||
Sbjct 119 TCGCTACGAGAATCATGACTCTCTCACTTCGAAAATGCCGGCTCTTCGATCACCCACCCG 178
Query 179 TTCTTTCCTCGATTTTTATAAGTTCGGGAATAAGAAAGCAATTGAAGATGAGCGTGCTAG 238
|||||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||
Sbjct 179 CTCTTTCCTCGATTTTTATCAGTTCGGGAACAAGAAAGCGATTGAAGATGAGCGTACTAG 238
Query 239 ACTTAATGATGAGATGAATCGGGGTTACTTTGCTGATATGAAAGAATTCAAGGAACATGG 298
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 239 ACTTAATGATGAGATGAATCGGGGATACTTTGCTGATATGAAAGAATTCAAGGATCATGG 298
Query 299 TGGTAAGATCGCAGCTGCAAATAAGACTA-TAATTCCTGCCGCTTCAGCCATCAAATTTC 357
|||||||||||||||||||||||||| || |||||||||| || ||||||||||||||||
Sbjct 299 TGGTAAGATCGCAGCTGCAAATAAGA-TATTAATTCCTGCTGCATCAGCCATCAAATTTC 357
Query 358 CGGTATTAGCAGTGACTTTCTCTAATGGAAAAAGCCTAAAGTTGCCTATTGCTCCCAACA 417
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 358 CGGTATTAGCAGTGACTTTCTCTAATGGAAAAAGCCTAAAGTTGCCTATTTCTCCCAACA 417
Query 418 GCAATGAGGTTGACACAGAGAGTTTGGTTGTTCCTAAAGTATCATTGGTGTGTCTGTCTT 477
||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||
Sbjct 418 GCAATGAGGTTGACACAGATAGTTTGGCTGTTCCTAAAGTATCATTGGTTTGTCTGTCTT 477
Query 478 TCCGAGCAAGCTCTCAGGAAATGATCAGCTCGTGGAGCAAACCATTTCTTGAATCATTTG 537
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 478 TCCGAGCAAGCTCTCAGGAAATGATAAGCTCGTGGAGCAAACCATTTCTTGAAACATTTG 537
Query 538 GCAACAGGAAAGATCTTCAGTTGTTTGAGGTTTCATTTATAGACAAATGGCTGCTGGGCT 597
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 538 GCAACAGGAAAGATCTTCAGCTGTTTGAGGTTTCATTTATAGACAAATGGCTGCTGGGCT 597
Query 598 TGGCCCCCATAAGAAAACTACTTCTCCGGGTCTTGCAAAAACCAAACAATAACGAGAATA 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 598 TGGCCCCCATAAGAAAACTACTTCTCCGGGTCTTGCAAAAACCAAACAATAACGAGAACA 657
Query 658 GTGTCCTCCAGAGGCAGG-TGGGTTACGCATTTGGAGACCATTACTACTTCCGTAAAGAA 716
|||||||||||||||||| || |||||||||||| ||||||||| ||||||||||| ||
Sbjct 658 GTGTCCTCCAGAGGCAGGCTGT-TTACGCATTTGGGGACCATTACAACTTCCGTAAACAA 716
Query 717 ATTAAAGTTCTGAACCTTCTCACCGGGTATATTCTCTTACTTGACAAATCCGGGAGAATA 776
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 717 ATTAAAGTTCTGAACCTTCTCACTGGGTATATTCTCTTACTTGACAAATCCGGGAGGATA 776
Query 777 AGATGGCAAGGTTTTGGAACAGCAACTCCAGAGGAAGTATCTCAACTTCTCTCTTGCACC 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGATGGCAAGGTTTTGGAACAGCAACTCCAGAGGAAGTATCTCAACTTCTCTCTTGCACC 836
Query 837 TCACTTCTCTTGGAAGATCAATGAGAGATCGCTCCCTGAACTGGAGACCGTCTCAAAACA 896
|||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||| |
Sbjct 837 TCACTTCTCTTGGAAGATCAGTGAGAGATCGCTGCCTAAACTGGAGACCGTCTCAAAAGA 896
Query 897 CAAGTGCTCCTCCTTGGCTCTTACGGAGGATGTT-GTCGAAGACA-ATAATAAAGTATCT 954
|||||||||||||||| |||||| | ||||| || | ||||| | | ||||||||||||
Sbjct 897 CAAGTGCTCCTCCTTGACTCTTATGAAGGAT-TTCGAAGAAGA-AGACAATAAAGTATCT 954
Query 955 CTTATCTTTCCGTTTTGCAGTTTGATTGGATT 986
||||||||||||||||| ||||||||| ||||
Sbjct 955 CTTATCTTTCCGTTTTGTAGTTTGATTCGATT 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43460125380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5