BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08230.2
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910527 jgi|Araly1|910527|Al_scaffold_0001_781 1989 0.0
> Ahg910527 jgi|Araly1|910527|Al_scaffold_0001_781
Length=1356
Score = 1989 bits (1077), Expect = 0.0
Identities = 1269/1362 (93%), Gaps = 12/1362 (1%)
Strand=Plus/Plus
Query 45 atgggtggagaa--gaga-gatcaggagatggagaaaaaagaggggaagaagTAGTTGAT 101
|||||||| ||| || | |||||||||| ||||||||||||||||| | | |||||
Sbjct 1 ATGGGTGGGGAAGGGATATCATCAGGAGATATAGAAAAAAGAGGGGAAG-A-T-GTTGAC 57
Query 102 GCTGGTTCTCTCTTCGTCCTTAAATCCAAAGGGACATGGTGGCACTGCGGATTCCACTTG 161
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 58 GCTGGTTCTCTCTTCGTCCTTAAATCCAAAGGGACGTGGTGGCACTGCGGATTCCACTTG 117
Query 162 ACGACGTCTATAGTGGCGCCTGCGCTACTGAGTCTACCGTACGCCTTCAAGTTCTTAGGA 221
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 118 ACGACGTCTATAGTGGCGCCGGCGCTACTGAGTCTACCGTACGCTTTCAAGTTCTTAGGA 177
Query 222 TGGGCTGCCGGGATATCTTGTCTGGTCGGAGGAGCAGCCGTTACTTTCTACTCGTACACT 281
|||| |||||| ||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 178 TGGGTTGCCGGAATATCCTGTCTGGTGGGAGGAGCAGCCGTCACTTTCTACTCGTACACC 237
Query 282 CTTCTTTCTCTT-ACTCTCGAACACCACGCTTCTCTCGGCAACCGTTACCTCCGCTTCCG 340
||||||||| || || ||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 238 CTTCTTTCT-TTAACACTCGAACACCACGCTTCCCTCGGCCACCGTTACCTCCGCTTCCG 296
Query 341 TGACATGGCTCATCACATCCTCAGTCCGAAATGGGGAAGGTACTACGTTGGACCAATACA 400
|||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 297 TGACATGGCTCACCACATCCTCGGTCCGAAATGGGGGAGGTACTACGTTGGACCAATACA 356
Query 401 AATGGCGGTGTGCTATGGTGTGGTTATTGCCAATGCGCTCTTGGGAGGGCAATGCCTAAA 460
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 357 AATGGCGGTGTGCTATGGTGTGGTTATTGCGAATGCGCTCTTGGGAGGGCAATGCCTTAA 416
Query 461 GGCAATGTACTTGGTAGTGCAGCCAAATGGGGAAATGAAACTCTTTGAGTTTGTGATTAT 520
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGCAATGTATTTGGTAACGCAGCCAAATGGGGAAATGAAACTCTTTGAGTTTGTGATTAT 476
Query 521 TTTTGGATGCTTACTTTTGGTTTTGGCACAATTCCCATCCTTTCACTCTCTACGATACAT 580
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTTTGGATGCTTACTCTTGGTTTTGGCACAATTCCCATCCTTTCACTCTCTACGATACAT 536
Query 581 CAACTCACTGTCTCTCCTCCTCTGCCTCCTCTACAGTGCTTCTGCCGCTGCTGCATCCAT 640
||||||| | ||||| ||||| ||||| ||||| |||||||| ||||| |||||||| ||
Sbjct 537 CAACTCATTTTCTCTGCTCCTATGCCTGCTCTATAGTGCTTCCGCCGCAGCTGCATCGAT 596
Query 641 CTACATTGG-AAAAGAACCAAATGCACCAGAGAAGGACTATACTATAGTTGGTGATCC-A 698
||||||||| ||||| | |||| |||||||||||||||||||||||||||||||| || |
Sbjct 597 CTACATTGGAAAAAG-ATCAAACGCACCAGAGAAGGACTATACTATAGTTGGTGA-CCAA 654
Query 699 GAAACTAGAGTGTTTGGAATCTTTAATGCTATGGCTATTATTGCTACTACATACGGCAAT 758
||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 655 GAAACTAAAGTGTTTGGAATCTTCAATGCTATGGCTATTATTGCCACTACATACGGCAAC 714
Query 759 GGCATTATACCTGAAATTCAGGCAACAATATCGGCACCAGTGAAAGGAAAAATGATGAAA 818
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GGCATTATACCCGAAATTCAGGCAACAATATCGGCACCAGTGAAAGGAAAAATGATGAAA 774
Query 819 GGGTTGTGTATGTGTTACCTTGTAGTAATAATGACATTTTTCACAGTAGCCATCACAGGA 878
|||||||||||||||||||||||||| ||| |||||| |||||| ||||| ||||| |||
Sbjct 775 GGGTTGTGTATGTGTTACCTTGTAGTGATAGTGACATATTTCACTGTAGCAATCACCGGA 834
Query 879 TATTGGGCATTCGGTAAAAAAGCCAATGGACTTATCTTCACCAATTTCTTAAATGCCGAG 938
||||||||||| ||||| |||||||||||| |||| |||||||||||||||||| |||||
Sbjct 835 TATTGGGCATTTGGTAACAAAGCCAATGGATTTATATTCACCAATTTCTTAAATACCGAG 894
Query 939 ACAAACCATTACTTTGTCCCTACTTGGTTTATTTTTCTCGTCAATCTCTTCACTGTCCTT 998
||| |||||||||| || ||||||||||||||||||||||||||||||||||| || |||
Sbjct 895 ACAGACCATTACTTAGTTCCTACTTGGTTTATTTTTCTCGTCAATCTCTTCACCGTTCTT 954
Query 999 CAACTTTCGGCCGTTGCTGTGGTATACCTACAACCTATAAACGATATTTTGGAAAGTGTG 1058
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 955 CAACTTTCGGCTGTTGCTGTGGTATACCTACAGCCTATAAACGATATTTTGGAAAGTGTA 1014
Query 1059 ATCAGCGATCCAACAAAGAAAGAATTCTCTATCCGCAATGTCATCCCTCGACTAGTTGTG 1118
||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1015 ATCAGCGATCCAACAAAAAAAGAGTTCTCTATCCGCAATGCCATCCCTCGACTAGTTGTG 1074
Query 1119 CGTTCCCTCTTCGTCGTGATGGCTACAATCGTTGCGGCAATGCTTCCATTTTTTGGAGAT 1178
|||||||||||||||||| |||||||||| | || ||||||||||||||||||||||||
Sbjct 1075 CGTTCCCTCTTCGTCGTGGCGGCTACAATCATAGCAGCAATGCTTCCATTTTTTGGAGAT 1134
Query 1179 GTAAACTCCTTGTTAGGCGCTTTCGGTTTTATACCTCTAGACTTCGTTCTTCCTGTAGTT 1238
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1135 GTAAACTCCTTGTTAGGTGCTTTCGGTTTTATACCTCTAGACTTCGTTCTACCTGTAGTG 1194
Query 1239 TTCTTCAACTTTACTTTCAAGCCGTCTaaaaaaaGTTTCATTTTTTGGATCAACACTGTG 1298
|||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1195 TTCTTCAATTTTACCTTCAAGCCATCTAAAAAAAGTTTCATTTTTTGGATCAACACTGTG 1254
Query 1299 ATCGCCGTGGTTTTTTCGTGTTTAGGGGTGATTGCTATGGTAGCGGCGGTTAGACAGATT 1358
||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||
Sbjct 1255 ATCGCCGTGGTTTTTTCGTGTTTAGGGGTGAGTGCTATGGTAGCAGCAGTTAGACAGATT 1314
Query 1359 ATAATAGATGCCAATACGTATAAGTTGTTTGCGGATGTATAA 1400
||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1315 ATAATCGATGCCAATACATATAAGTTGTTTGCGGATGTATAA 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54659501575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5