BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08280.1 Length=1446 Score E Sequences producing significant alignments: (Bits) Value Ahg470889 jgi|Araly1|470889|fgenesh2_kg.1__843__AT1G08280.1 1766 0.0 > Ahg470889 jgi|Araly1|470889|fgenesh2_kg.1__843__AT1G08280.1 Length=1204 Score = 1766 bits (956), Expect = 0.0 Identities = 1132/1214 (93%), Gaps = 24/1214 (2%) Strand=Plus/Plus Query 1 ATGAAACGATCCGTTAGACCTCTCTTCAGTGCTCTTCTCTTCGCCTTCTTCGCCGCTACA 60 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1 ATGAAACGATCCGTTAGACCTCTCTTCAGTGCTCTCCTCTTCGCCTTCTTCGCCGCCACA 60 Query 61 CTCATCTGCAGAGTGGCGATTCGTCGGAGCAGCTTCTCCTTCGCTTCCGCCATCGCTGAG 120 ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| Sbjct 61 CTCATCTGCAGAGTGGCGATTCGCCGGAGTAGCTTCTCCTTCGCCTCCGCCATCGCTGAG 120 Query 121 CTTGGTTCCTCCGGTCTCATGACTGAAGATATTGTATTCAACGAGACATTGCTCGAGTTC 180 |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 121 CTTGGTACCTCCGGACTCATGACTGAAGAGATTGTATTCAACGAGACATTGCTCGAATTC 180 Query 181 GCCGCCATTGATCCCGGAGAACCTAACTTCAAACAGGAAGTCGATTTGATTTCCGATTAC 240 ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 181 GCCGCCATTGATCCCGGCGAACCTAAATTCAAGCAGGAAGTCGATTTGATTTCCGATTAC 240 Query 241 GACCACACTCGGAGAAGCCACCGTCGACATTTCAGCTCCATGTCAATAAGACCAAGCGAG 300 ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| Sbjct 241 GACCACACTCGGAGAAGCCACCGCCGACATTTCAGCTCCATGTC---AAGACCAACCGAG 297 Query 301 CAACAACGCCGTGTGAGTAGAGACATTGCTTCCTCCTCCAAGTTTCCGGTAACGCTTCGT 360 |||| ||||| || ||| |||||||||| | ||||||||||||||||||| Sbjct 298 CAACCACGCCATGGGAGCCGAGACATTGC-T--TCCTCCAAGTTTCCGGTAA-------- 346 Query 361 TCTTCTCAGGCTTATCGTTACTGGTCAGAGTTCAAAAGAAATTTACGGCTTTGGGCTCGT 420 | ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 347 AC-TCTCAGGTTTATCGTTACTGGTCAGAGTTCAAAAGAAATTTACGCCTTTGGGCTCGT 405 Query 421 AGAAGAGCTTATGAACCTAATATCATGTTAGATTTGATCAGATTAGTTAAGAATCCGATT 480 ||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| Sbjct 406 AGAAGAGCTTATGAACCTAATATCATGTTAGATTTGATCGGTTTAGTCAAGAATCCGATC 465 Query 481 GATGTTCACAATGGTGTTGTTTCGATTTCGAGTGAAAGATACTTATCTTGTGCAGTGGTT 540 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 466 GATGTTCACAACGGTGTTGTTTCGATTTCCAGTGAAAGATACTTATCTTGTGCAGTGGTT 525 Query 541 GGGAATAGTGGTACATTGCTAAATAGTCAATACGGAGATCTCATTGATAAGCATGAGATT 600 || ||||| ||||||||||| |||||||||||||||| |||||||||||| ||||||||| Sbjct 526 GGAAATAGCGGTACATTGCTGAATAGTCAATACGGAGGTCTCATTGATAAACATGAGATT 585 Query 601 GTGATTCGGTTGAACAATGCGAAAACAGAGAGGTTT-GAGAAGAAGGTTGGATCGAAAAC 659 ||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| Sbjct 586 GTGATTCGGTTGAACAATGCGAAAACAGAGA-GTTTCGAGAAGAAGGTCGGATCGAAAAC 644 Query 660 AAATATATCTTTCATAAATAGTAACATTTTGCATCAATGTGGGAGAAGGGAGAGTTGCT- 718 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 645 GAATATATCTTTCATAAATAGTAACATTTTGCATCAGTGTGGGAGAAGGGAGAGTTG-TC 703 Query 719 ATTGTCATCCTTATGGTGAAACAGTGCCTATTGTGATGTACATTTGCCAACCGATTCATG 778 |||| ||||||||||| |||||||||||||||||| |||| ||||||||||||||||||| Sbjct 704 ATTGCCATCCTTATGGCGAAACAGTGCCTATTGTGTTGTATATTTGCCAACCGATTCATG 763 Query 779 TTTTGGATTACACTTTGTGTAAACCATCTCATCGAGCTCCTCTGCTTATCACGGATCCGA 838 ||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||| Sbjct 764 TTTTGGATTACACCTTGTGCAAACCGTCTCATCGAGCTCCTCTGCTTATCACTGATCCGA 823 Query 839 GGTTCGATGTCATGTGTGCTAGAATCGTGAAGTATTACTCGGTGAAGAAGTTCTTGGAAG 898 | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 824 GATTCGATGTCCTGTGTGCTAGAATCGTGAAGTATTACTCGGTGAAGAAGTTCTTGGAAG 883 Query 899 AGAAGAAAGCGAAAGGGTTTGTCGATTGGAGTAAAGATCATGAAGGCTCGTTGTTTCACT 958 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 884 AGAAGAAAGCGGAAGGGTTTGTTGATTGGAGTAAAGATCATGAAGGCTCGTTGTTTCACT 943 Query 959 ATTCGTCGGGTATGCAGGCTGTGATGCTTGCAGTGGGGATTTGTGAGAAAGTTAGTGTCT 1018 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 944 ACTCGTCGGGTATGCAGGCTGTGATGCTTGCAGTGGGGATCTGTGAGAAAGTTAGTGTCT 1003 Query 1019 TCGGGTTTGGGAAGTTGAATTCAACCAAGCACCATTACCATACTAATCAGAAAGCAGAGC 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1004 TCGGGTTTGGGAAGTTGAATTCAACCAAGCACCATTACCATACTAATCAGAAAGCAGAGC 1063 Query 1079 TGAAG-CTTCATGACTATGAAGCAGAGTATAGATTGTATCGAGACCTGGAAAACAGTCCC 1137 ||| | ||||||||||||||||||||||||| ||||||||| |||||||| | || |||| Sbjct 1064 TGA-GTCTTCATGACTATGAAGCAGAGTATAAATTGTATCGCGACCTGGAGAGCAATCCC 1122 Query 1138 AGGGCCATTCCATTCTTACCAAAAGAATTCAAGATCCCTTTGGTACAAGTTTACCATTGA 1197 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1123 AGGGCCATCCCATTCTTGCCAAAAGAATTCAAGATCCCTTTGGTACAAGTTTACCATTGA 1182 Query 1198 -ATATACATATATA 1210 | || || ||||| Sbjct 1183 CACAT-CA-ATATA 1194 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54088147900 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5