BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08280.1
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470889 jgi|Araly1|470889|fgenesh2_kg.1__843__AT1G08280.1 1766 0.0
> Ahg470889 jgi|Araly1|470889|fgenesh2_kg.1__843__AT1G08280.1
Length=1204
Score = 1766 bits (956), Expect = 0.0
Identities = 1132/1214 (93%), Gaps = 24/1214 (2%)
Strand=Plus/Plus
Query 1 ATGAAACGATCCGTTAGACCTCTCTTCAGTGCTCTTCTCTTCGCCTTCTTCGCCGCTACA 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1 ATGAAACGATCCGTTAGACCTCTCTTCAGTGCTCTCCTCTTCGCCTTCTTCGCCGCCACA 60
Query 61 CTCATCTGCAGAGTGGCGATTCGTCGGAGCAGCTTCTCCTTCGCTTCCGCCATCGCTGAG 120
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 61 CTCATCTGCAGAGTGGCGATTCGCCGGAGTAGCTTCTCCTTCGCCTCCGCCATCGCTGAG 120
Query 121 CTTGGTTCCTCCGGTCTCATGACTGAAGATATTGTATTCAACGAGACATTGCTCGAGTTC 180
|||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 121 CTTGGTACCTCCGGACTCATGACTGAAGAGATTGTATTCAACGAGACATTGCTCGAATTC 180
Query 181 GCCGCCATTGATCCCGGAGAACCTAACTTCAAACAGGAAGTCGATTTGATTTCCGATTAC 240
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 181 GCCGCCATTGATCCCGGCGAACCTAAATTCAAGCAGGAAGTCGATTTGATTTCCGATTAC 240
Query 241 GACCACACTCGGAGAAGCCACCGTCGACATTTCAGCTCCATGTCAATAAGACCAAGCGAG 300
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 241 GACCACACTCGGAGAAGCCACCGCCGACATTTCAGCTCCATGTC---AAGACCAACCGAG 297
Query 301 CAACAACGCCGTGTGAGTAGAGACATTGCTTCCTCCTCCAAGTTTCCGGTAACGCTTCGT 360
|||| ||||| || ||| |||||||||| | |||||||||||||||||||
Sbjct 298 CAACCACGCCATGGGAGCCGAGACATTGC-T--TCCTCCAAGTTTCCGGTAA-------- 346
Query 361 TCTTCTCAGGCTTATCGTTACTGGTCAGAGTTCAAAAGAAATTTACGGCTTTGGGCTCGT 420
| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 347 AC-TCTCAGGTTTATCGTTACTGGTCAGAGTTCAAAAGAAATTTACGCCTTTGGGCTCGT 405
Query 421 AGAAGAGCTTATGAACCTAATATCATGTTAGATTTGATCAGATTAGTTAAGAATCCGATT 480
||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 406 AGAAGAGCTTATGAACCTAATATCATGTTAGATTTGATCGGTTTAGTCAAGAATCCGATC 465
Query 481 GATGTTCACAATGGTGTTGTTTCGATTTCGAGTGAAAGATACTTATCTTGTGCAGTGGTT 540
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 466 GATGTTCACAACGGTGTTGTTTCGATTTCCAGTGAAAGATACTTATCTTGTGCAGTGGTT 525
Query 541 GGGAATAGTGGTACATTGCTAAATAGTCAATACGGAGATCTCATTGATAAGCATGAGATT 600
|| ||||| ||||||||||| |||||||||||||||| |||||||||||| |||||||||
Sbjct 526 GGAAATAGCGGTACATTGCTGAATAGTCAATACGGAGGTCTCATTGATAAACATGAGATT 585
Query 601 GTGATTCGGTTGAACAATGCGAAAACAGAGAGGTTT-GAGAAGAAGGTTGGATCGAAAAC 659
||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||
Sbjct 586 GTGATTCGGTTGAACAATGCGAAAACAGAGA-GTTTCGAGAAGAAGGTCGGATCGAAAAC 644
Query 660 AAATATATCTTTCATAAATAGTAACATTTTGCATCAATGTGGGAGAAGGGAGAGTTGCT- 718
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 645 GAATATATCTTTCATAAATAGTAACATTTTGCATCAGTGTGGGAGAAGGGAGAGTTG-TC 703
Query 719 ATTGTCATCCTTATGGTGAAACAGTGCCTATTGTGATGTACATTTGCCAACCGATTCATG 778
|||| ||||||||||| |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 704 ATTGCCATCCTTATGGCGAAACAGTGCCTATTGTGTTGTATATTTGCCAACCGATTCATG 763
Query 779 TTTTGGATTACACTTTGTGTAAACCATCTCATCGAGCTCCTCTGCTTATCACGGATCCGA 838
||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 764 TTTTGGATTACACCTTGTGCAAACCGTCTCATCGAGCTCCTCTGCTTATCACTGATCCGA 823
Query 839 GGTTCGATGTCATGTGTGCTAGAATCGTGAAGTATTACTCGGTGAAGAAGTTCTTGGAAG 898
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 GATTCGATGTCCTGTGTGCTAGAATCGTGAAGTATTACTCGGTGAAGAAGTTCTTGGAAG 883
Query 899 AGAAGAAAGCGAAAGGGTTTGTCGATTGGAGTAAAGATCATGAAGGCTCGTTGTTTCACT 958
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 884 AGAAGAAAGCGGAAGGGTTTGTTGATTGGAGTAAAGATCATGAAGGCTCGTTGTTTCACT 943
Query 959 ATTCGTCGGGTATGCAGGCTGTGATGCTTGCAGTGGGGATTTGTGAGAAAGTTAGTGTCT 1018
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 944 ACTCGTCGGGTATGCAGGCTGTGATGCTTGCAGTGGGGATCTGTGAGAAAGTTAGTGTCT 1003
Query 1019 TCGGGTTTGGGAAGTTGAATTCAACCAAGCACCATTACCATACTAATCAGAAAGCAGAGC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 TCGGGTTTGGGAAGTTGAATTCAACCAAGCACCATTACCATACTAATCAGAAAGCAGAGC 1063
Query 1079 TGAAG-CTTCATGACTATGAAGCAGAGTATAGATTGTATCGAGACCTGGAAAACAGTCCC 1137
||| | ||||||||||||||||||||||||| ||||||||| |||||||| | || ||||
Sbjct 1064 TGA-GTCTTCATGACTATGAAGCAGAGTATAAATTGTATCGCGACCTGGAGAGCAATCCC 1122
Query 1138 AGGGCCATTCCATTCTTACCAAAAGAATTCAAGATCCCTTTGGTACAAGTTTACCATTGA 1197
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 AGGGCCATCCCATTCTTGCCAAAAGAATTCAAGATCCCTTTGGTACAAGTTTACCATTGA 1182
Query 1198 -ATATACATATATA 1210
| || || |||||
Sbjct 1183 CACAT-CA-ATATA 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54088147900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5