BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08290.1
Length=1760
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334119 jgi|Araly1|334119|fgenesh1_pg.C_scaffold_1000684 1319 0.0
Ahg486217 jgi|Araly1|486217|fgenesh2_kg.5__2209__AT3G57670.1 178 1e-43
> Ahg334119 jgi|Araly1|334119|fgenesh1_pg.C_scaffold_1000684
Length=993
Score = 1319 bits (714), Expect = 0.0
Identities = 790/826 (96%), Gaps = 8/826 (1%)
Strand=Plus/Plus
Query 258 GAACCACTCAACACGTCTATTCAATGCTTGCCTCTTCTAAACAAGCTCATGGAAAAT-A- 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 169 GAACCACTCAACACGTCTATTCAATGCTTGCCTCTTCTAAACAAGCTCATGGAAAATAAG 228
Query 316 A-TAGTCAAGCC-TCG--GATATCAAAGAAGAGAATAAGGATGATGTGGTTACCCTCCAA 371
| | |||||||| | | ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 229 AGTCGTCAAGCCTTGGATGATATTAAAGAAGAGAATAAGGATGATGTGGTTACTCTCCAA 288
Query 372 ATCGGATTTCCTAAATACCACCGTGGTAGCTCGGAGGATGGCTCTGATATAACTTTCGAT 431
||||||||||||||||| ||||||||||||||||| |||| |||||||| ||||||||||
Sbjct 289 ATCGGATTTCCTAAATATCACCGTGGTAGCTCGGATGATGACTCTGATACAACTTTCGAT 348
Query 432 CATCAGAAGAAACCCATCAAGAGAGAGATAATAGAAGATGGTGTGGTGATGATGAAGAAG 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 CATCAGAAGAAACCCATCAAGAGAGAGATAATAGAAGATGGTGTGGTGATGATGAAGAAG 408
Query 492 AGGAGGAAGATGAAGTTTGATGAGGAGATAATTGATTCTGATGTGGAAGTATGTGGGAAG 551
|||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct 409 AGGAGGAAGATGAAGTTTGATGAGGAAATAACTGGCTCTGATGTGGAAGTATGTGGGAAG 468
Query 552 AGGTTTTGGATACCAAGTCCGGCTCAGATTCATGTCGGTCCAATGCAATTTGCTTGCTCT 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AGGTTTTGGATACCAAGTCCGGCTCAGATTCATGTCGGTCCAATGCAATTTGCTTGCTCT 528
Query 612 ATTTGCAGCAAAACATTCAATAGGTACAATAACATGCAGATGCATATGTGGGGACATGGA 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 ATTTGCAGCAAAACATTCAATAGGTACAATAACATGCAGATGCATATGTGGGGACATGGA 588
Query 672 TCTGAGTTCAGAAAAGGGGCTGACTCGTTGAAAGGCACAATC-CAACCGGCAGCCATCCT 730
|||||||||||||||||||||||||| ||||| ||||||| | ||||| |||||||||||
Sbjct 589 TCTGAGTTCAGAAAAGGGGCTGACTCCTTGAAGGGCACAA-CACAACCTGCAGCCATCCT 647
Query 731 GCGGCTGCCATGCTATTGCTGTGCCGAGGGATGCAAGAACAACATCAACCATCCGCGGTC 790
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 648 GCGGCTGCCATGCTATTGTTGTGCGGAGGGATGCAAGAACAACATCAACCATCCGCGGTC 707
Query 791 CAAGCCCCTGAAAGATTTCCGTACACTTCAGACACATTACAAACGTAAGCATGGCTCCAA 850
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 CAAGCCCTTGAAGGATTTCCGTACACTTCAGACACATTACAAACGTAAGCATGGCTCCAA 767
Query 851 GCCCTTTTCTTGCGGAAAATGTGGCAAAGCCTTGGCTGTGAAAGGCGACTGGAGGACCCA 910
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 768 GCCCTTTTCTTGCGGCAAATGTGGCAAAGCGTTGGCTGTGAAAGGTGACTGGAGGACCCA 827
Query 911 TGAGAAAAACTGCGGAAAGCTTTGGTATTGTACATGTGGATCAGATTTCAAGCATAAGAG 970
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 828 TGAGAAAAACTGCGGAAAGCTTTGGTATTGTACATGTGGATCAGATTTCAAGCACAAGAG 887
Query 971 GTCTCTCAAGGACCACATTAGGTCCTTTGGCAGTGGACATTCTCCTCACCCGTCTCTTTT 1030
|||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||
Sbjct 888 GTCTCTCAAGGACCACATCAGGTCCTTTGGCAGTGGACATTCTCCTCTCCCATCTCTTTC 947
Query 1031 GTTTGACGGTTTTGAGGAGGATACAGAATGCGTCACCACAGAGTGA 1076
|||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 948 GTTTGACGGTTTTGAGGAGGATACAGAATGTGTCACCACAGAGTGA 993
Score = 204 bits (110), Expect = 2e-51
Identities = 151/170 (89%), Gaps = 6/170 (4%)
Strand=Plus/Plus
Query 62 gaTGAATTCTTATGAGACGAAAGGCTTAAGTTTCGAATCCCCAAGCTTTATTGAATGGCT 121
||||||| |||| || ||| || |||||||||||||| |||||||| |||||||||||
Sbjct 9 GATGAATCCTTA--CGA-GAAGGGTTTAAGTTTCGAATCTCCAAGCTTCATTGAATGGCT 65
Query 122 TAAACCTCAATCTTCTACTACTTCTTCTAAATCTGTGTTATATCGTGGGAAGACAAGAGA 181
|||||||| ||| | | ||||||||||| ||||| | ||||||||| ||||||||||||
Sbjct 66 TAAACCTCCATC-T-T-CTACTTCTTCTCAATCTATCTTATATCGTATGAAGACAAGAGA 122
Query 182 TGCTATATCAAGATCAAATCACCACCAGAGTCAGATGAACATGTTGGAAC 231
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 123 TGCTATATCAAGATCAAATCACCACCAGAGTCAGATGAATATGTTGGAAC 172
> Ahg486217 jgi|Araly1|486217|fgenesh2_kg.5__2209__AT3G57670.1
Length=1503
Score = 178 bits (96), Expect = 1e-43
Identities = 309/409 (76%), Gaps = 25/409 (6%)
Strand=Plus/Plus
Query 613 TTTGCAGCAAAACATTCAATAGGTACAATAACATGCAGATGCATATGTGGGGACATGGAT 672
||||| |||||| ||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 683 TTTGCTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGAT 742
Query 673 CTGAGTTCAGAAAAGGGGCTGACTCGT-TGAAAGGCA-CA-ATCCAACCGGCAGCCATCC 729
| | | ||||||||| |||| || | | || || | || | ||||| || | || |
Sbjct 743 CACAATACAGAAAAGGACCTGAATC-TCT-AAGGGGAACACAGCCAACAGG-A---ATGC 796
Query 730 TGCGGCTGCCATGCTATTGCTGTGC-CGAGGGATGCAAG-AACAACATCAACCATCCGCG 787
| |||| || ||||| ||||| || | ||| ||| | |||||||| ||||||| |
Sbjct 797 TAAGGCTTCCGTGCTACTGCTGCGCACCAGGC-TGCC-GCAACAACATTGACCATCCAAG 854
Query 788 GTCCAAGCCCCTGAAAGATTTCCGTACACTTCAGACACATTACAAACGTAAGCATGGC-T 846
| | ||||| || ||||| ||| | |||||||| |||||||||||| | || ||||| |
Sbjct 855 GGCAAAGCCTCTCAAAGACTTCAGAACACTTCAAACACATTACAAAAGGAAACATGGGAT 914
Query 847 CCAAGCCCTTTTC-T-TGC-GGAAAATGTGGCAAAGCCTTG-GCTGTGAAAGGCGACTGG 902
| || || ||| | | || ||||| ||||| |||| ||| || || ||| || |||
Sbjct 915 CAAA-CC-TTT-CATGTGTAGGAAA-TGTGG-AAAGGCTTTCGCAGTCCGAGGGGATTGG 969
Query 903 AGGACCCATGAGAAAAACTGCGGAAAGCTTTGGTATTGTACATGTGGATCAGATTTCAAG 962
|| || |||||||| || || || |||||||||||||| | |||||||| ||||| |||
Sbjct 970 AGAACACATGAGAAGAATTGTGGCAAGCTTTGGTATTGCATTTGTGGATCTGATTTTAAG 1029
Query 963 CATAAGAGGTCTCTCAAGGACCACATTA-GGTCCTTTGGCAGTGGACAT 1010
|| || || |||||||| || || || | || | ||||| | ||| |||
Sbjct 1030 CACAAAAGATCTCTCAAAGATCATATCAAGG-CTTTTGGAAATGGCCAT 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66048484830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5