BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08300.1
Length=2241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470891 jgi|Araly1|470891|fgenesh2_kg.1__845__AT1G08300.1 1810 0.0
Ahg890992 jgi|Araly1|890992|Al_scaffold_0007_2978 697 0.0
Ahg910534 jgi|Araly1|910534|Al_scaffold_0001_788 601 8e-171
Ahg890991 jgi|Araly1|890991|Al_scaffold_0007_2977 446 4e-124
> Ahg470891 jgi|Araly1|470891|fgenesh2_kg.1__845__AT1G08300.1
Length=1388
Score = 1810 bits (980), Expect = 0.0
Identities = 1249/1379 (91%), Gaps = 17/1379 (1%)
Strand=Plus/Plus
Query 153 GCGCCGACCAATGCAAGGGAATCGCGACGGCTCGTGGTCACTACGCGCCTCCGCGTACGG 212
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 8 GCGCCGACCAATGCAAGGGAATCCCGACGGCTCGTGGTCACTACGCGCCTCCGCGTACGG 67
Query 213 TGGAAGCGGCAATGGAAACGGAGGGTATCTTCCTCAAACGACTCCTGTATTTCACAATTA 272
||||| |||||| ||||||||||| ||| |||||||| |||||| ||| |||| ||||||
Sbjct 68 TGGAAACGGCAACGGAAACGGAGGATATATTCCTCAAGCGACTCGTGTGTTTCCCAATTA 127
Query 273 CATTGTCAAACAACAACAACCCATCAGATACAATTTCCAGACGCAGCAGAATCTCAATTT 332
|||| || || ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 128 CATTATC---CAGCAACAACCCATCAGATACAATTTCCAGACTCAGCAGAATCTCAACTT 184
Query 333 CCCTCATCCACAATTTGGCGGCGGCGCTAATGTAGAACTTATTCGAATTGATAAGGCCGT 392
| |||| |||||||||||||| ||||||||||||||| | || ||||||||||||||| |
Sbjct 185 CACTCACCCACAATTTGGCGGTGGCGCTAATGTAGAAGTCATGCGAATTGATAAGGCCAT 244
Query 393 AAACAATACGCGTAAATCATTAATTGCTGCTGGAGACAACGTATCTTCGACTAGAGTTTC 452
|||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||
Sbjct 245 CAACAATACGCGTAAATCACTAATTGCTGCTGGAGAGAACGTTTCTTCGACTAGAGTGTC 304
Query 453 GCAATCGGTTTTAGCACAACTTCAGGC---TGACACTTGGCGTTCCTTGGGGATATGGAT 509
|||||| ||||||| |||||||||||| ||| | ||||||||||||||||||| ||
Sbjct 305 GCAATCAGTTTTAGAACAACTTCAGGCTGATGATATTTGGCGTTCCTTGGGGATACAAAT 364
Query 510 GCAAGATGTTCCTTCGCTTCGCCAACTCATGGCCCTTGAAGGCAAGATCATTGCATTTAT 569
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 365 GCAAGATGTTCCTTCGCTTCGCCAACTCATGGCCCTTGAAGGCAAGATCATTGCCTTTAT 424
Query 570 TCACTGCTTCATTGGCGCTAGAGGAATCGTGACAT-TGCATGATTTGGAAGTGGCAATAT 628
||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||
Sbjct 425 TCACTGCTTCATTGGCGCTAGAGGAATCGTGAC-TCTGCATGATTTGGAAGTAGCAATAT 483
Query 629 GCCAAAACGAGTTTGTTGGTTGTTTTGATGATCTGGGATTGGGACCTTTGCTGCAGCATC 688
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 484 GCCGTAACGAGTTCGTTGGTTGTTTTGATGATCTGGGATTGGGACCTTTGCTGCAACATC 543
Query 689 CACTTGTCTTGCTCTATTTTCCATCCGTCTATTGTTCTACTGCCCCAGTT-AAGATCACT 747
|||||||||||||||||||||||||| ||| | ||||||||||||||||| || ||||||
Sbjct 544 CACTTGTCTTGCTCTATTTTCCATCCATCTCTGGTTCTACTGCCCCAGTTCAA-ATCACT 602
Query 748 AGTGAGGAGATAATATCATTACTTGATAGCTATCTAAACACTTACGATATTGACGATGTT 807
||||||||| |||| ||||| |||||||||| |||||| ||||||||||| |||||||||
Sbjct 603 AGTGAGGAGTTAATCTCATTTCTTGATAGCTTTCTAAAAACTTACGATATGGACGATGTT 662
Query 808 AAGCTCGATGAATTCCTGGATTTTGTTGCTGAGGCTAAAGCAGTTACAAGCAAGGAAAAG 867
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 663 AAGCTCGATGAATTCCTGGATTTTGTTGCGGAGGAAAAAGCAGTTACAAGCAAGGAAAAG 722
Query 868 CTTGGTGTCCGTATTCAGAACTTGCGGATGTATGTATCTTTCATTCAAGATGCGAAGAGA 927
||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 723 CTTGGTGTCCGTATTCAGAGCTTGCGGATGTATGTATCTTTCATTCAAAACGCGAAGAGA 782
Query 928 CAAGAAGGCGAAATATTGAAGATCGTATTGACTGAACTGCATCAGAAGTATCGCATCCTC 987
||||||||||||| |||||||||| | |||||| ||||||||||||||||| |||||||
Sbjct 783 CAAGAAGGCGAAACATTGAAGATCTTGCTGACTGGACTGCATCAGAAGTATCACATCCTC 842
Query 988 TCATCAAAGAAACAACGGCAAGATAAGGATTATTGTGGCAAGCATACAAGATTTAATTCA 1047
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 843 CCATCAAAGAAACAACAGCAAGATAAAGATTATTGTGGCAAGCATACAAGATTTAATTCA 902
Query 1048 CCGAGCTCGGAGGAAAATGATAGTGCTGATTATGAGGTTGAAAATGTTAAAAGATCTGAC 1107
|||||||||||| ||||||||||||||||||||||| ||||||||||| || | ||||
Sbjct 903 TTGAGCTCGGAGGACAATGATAGTGCTGATTATGAGGTCGAAAATGTTAATAGTTGTGAC 962
Query 1108 CATTTCAGTAGTTGTCCGTATTCATCTGCTGAAGAAGAGGTTAAGCAGCTTGGGAGCTCC 1167
|| ||||||||||| || ||| |||| | || ||||||| | ||||||| || |||||||
Sbjct 963 CAATTCAGTAGTTGCCCATATCCATCCGTTGCAGAAGAGATGAAGCAGCCTGTGAGCTCC 1022
Query 1168 AGTAAGAAAAGGAAGGCTGAAAGTCGTAATCATGAAAAATCTGATTC-TCCCAAGCTGCT 1226
| ||| |||||||||||||||||||||| |||||||||||||||| ||| || ||||
Sbjct 1023 AATAAAAAAAGGAAGGCTGAAAGTCGTAGCCATGAAAAATCTGATTTGTCCAAA-CTGCG 1081
Query 1227 TAGAAGAGGCCCCTCTAAGTTGCGTAGAGGACATGTGAAACAAAAGATACCTAAATCGGC 1286
||||||| ||||||||| || | ||||||||||||||||||| |||||| ||| | |||
Sbjct 1082 TAGAAGATACCCCTCTAAATTACTTAGAGGACATGTGAAACAAGAGATACATAACTTGGC 1141
Query 1287 AGATGATTCTGATGC---GCAGATTTTCAGTGTCAATGACGCTGATTTCACTCTTTCTGA 1343
|||||||||||||| |||||||||||||| |||||| ||||||||||| ||||||||
Sbjct 1142 GGATGATTCTGATGCTAAGCAGATTTTCAGTGGCAATGAGGCTGATTTCACACTTTCTGA 1201
Query 1344 AGGAGCTTTGAAATTGTTCATCTCAACTTGGAAGGAAACATGTAAAGAGCTAAGCATCTC 1403
||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 1202 AGGAGCTTTGAGATTGTTCATTTCAACTTGGAAGGATACATGTAAAGAGCTAAGCATGTC 1261
Query 1404 AGTGTTTGTCAAGAAATTGTTGTCTTTTTACAACTTGGGGGGATCCGAAGTACACGGTCA 1463
| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct 1262 AATGTTTGTGAAGAAATTGTTGTCTTTTTACAACTTAGGGGGATCCGAAGTACAAGCTCA 1321
Query 1464 GATTAAAATAGCTACAGCTG-TGTCCTCATTTCCATTTGTTGGATTACTACATGTCGCT 1521
|||||||| ||||| ||| | |||| |||||||||||| ||||||||||||||||||||
Sbjct 1322 GATTAAAAGAGCTAAAGC-GATGTCATCATTTCCATTTTTTGGATTACTACATGTCGCT 1379
> Ahg890992 jgi|Araly1|890992|Al_scaffold_0007_2978
Length=1827
Score = 697 bits (377), Expect = 0.0
Identities = 558/644 (87%), Gaps = 18/644 (3%)
Strand=Plus/Plus
Query 379 ATTGATAAGGCCGTAAACAATACGCGTAAATCA-TTAATTGCTGCTGGAGACAACGTATC 437
|||||||| || || ||||| |||||||||||| || ||||||||||||| | |||||
Sbjct 613 ATTGATAAAGCTGTGAACAAGACGCGTAAATCAGTT-GTTGCTGCTGGAGAGAGTGTATC 671
Query 438 TTCGACTAGAGTTTCGCA-ATCGGTTTTAGCACAACTTCAGGCTGACACTTGGCGTTCCT 496
|||||||||||| ||| | | ||||| | | | ||||||||||||| ||||||||| ||
Sbjct 672 TTCGACTAGAGTGTCG-AGAGCGGTTCTCGAAGAACTTCAGGCTGATTCTTGGCGTT-CT 729
Query 497 TGGGGATATG--GATGCAAGATGTTCCTTCGCTTCGCCAACTCATGGCCCTTGAAGGCAA 554
| ||| | || ||||||||||||||||| ||||| ||||| |||||| ||||||| ||
Sbjct 730 TTGGG-TGTGCAAATGCAAGATGTTCCTTCCCTTCGTCAACTAATGGCCATTGAAGGAAA 788
Query 555 GATCATTGCATTTATTCACTGCTTCATTGGCGCTAGAGGAATCGTGACATTGCATGATTT 614
||||| ||||||||||||||||||| |||| |||||| |||| |||||| ||||||||||
Sbjct 789 GATCAATGCATTTATTCACTGCTTCGTTGGGGCTAGAAGAATTGTGACACTGCATGATTT 848
Query 615 GGAAGTGGCAATATGCCAAAACGAGTTTGTTGGTTGTTTTGATGATCTGGGATTGGGACC 674
||||||||||||||||| ||||||||||||| || |||||||||| ||| |||||||||
Sbjct 849 GGAAGTGGCAATATGCCGGAACGAGTTTGTTGATTCTTTTGATGATTTGGAATTGGGACC 908
Query 675 TTTGCTGCAGCATCCACTTGTCTTGCTCTATTTTCCATCCGTCTATTGTTCTACTGCCCC 734
|||||||||||||||||| |||||||| |||||||||||| | | | | ||||||| |||
Sbjct 909 TTTGCTGCAGCATCCACTAGTCTTGCTGTATTTTCCATCCATATCTAGCTCTACTGGCCC 968
Query 735 AGTTAAGATCACTAGTGAGGAGATAATATCATTACTTGATAGCTATCTAAACACTTACGA 794
|||| |||||||||||||||||||||||||||| |||||||||||||| ||||||| |
Sbjct 969 AGTTCAGATCACTAGTGAGGAGATAATATCATTTCTTGATAGCTATCTGCACACTTA-TA 1027
Query 795 T-ATTGACGATGTTAAGCTCGATGAATTCCTGGATTTTGTTGCTGAGGC-TAAAGCAGTT 852
| | || |||||||||||||||||||| ||| |||||||||| || | ||| |||||
Sbjct 1028 TGACAGAAGATGTTAAGCTCGATGAATTTCTGAATTTTGTTGC-AAGCCAAAAATCAGTT 1086
Query 853 ACAAGCAAGGAAAAGCTTGGTGTCCGTATTCAGAACTTGCGGATGTATGTATCTTTCATT 912
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1087 ACAAGCAAGGAAAAGCTTGGTGTCCGTATTCAGAGCTTGCGGATGTATGTATCTTTCATT 1146
Query 913 CAAGATGCGAAGAGACAAGAAGGCGAAATATTGAA-GATCGTA-TTGACTGAACTGCATC 970
||||| || || ||||||||||| |||| |||||| | || || || ||||| |||||||
Sbjct 1147 CAAGACGCCAAAAGACAAGAAGGTGAAACATTGAAAG-TCTTACTT-ACTGAGCTGCATC 1204
Query 971 AGAAGTATC-GCATCCTCTCATCAAAGAAACAACGGCAAGATAA 1013
||||||||| | |||| |||||||||||||||||| ||||||||
Sbjct 1205 AGAAGTATCAG-ATCCCCTCATCAAAGAAACAACGACAAGATAA 1247
> Ahg910534 jgi|Araly1|910534|Al_scaffold_0001_788
Length=507
Score = 601 bits (325), Expect = 8e-171
Identities = 402/440 (91%), Gaps = 2/440 (0%)
Strand=Plus/Plus
Query 1678 AATTCCGTCTCAACTGACTTCAGCATAAGAAATCAGCTTCATACCGGCGCACTTTGGGCT 1737
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 52 AATTCTGTCTCAACTGACTTCAGCATAAGAAATCAGCTTCACACCGGGGCACTTTGGGCT 111
Query 1738 GCACAGGCGCAAGAGTCCGGTAAAAAAGGTGAAGAAATAGCTTACAGATACTTTGTTGCA 1797
||||||||||||||| | |||| ||||||||||||||| |||||||||||||||||||||
Sbjct 112 GCACAGGCGCAAGAGACAGGTAGAAAAGGTGAAGAAATCGCTTACAGATACTTTGTTGCA 171
Query 1798 AAATATGGCAAGAAGGCACTGGTTAAATGGGTTAATGAGCATAGTGAAACCGGATTACCT 1857
||||| || |||| ||| ||||||| ||||||||||||||| || |||||||| ||||||
Sbjct 172 AAATACGGTAAGACGGCTCTGGTTAGATGGGTTAATGAGCAGAGCGAAACCGGGTTACCT 231
Query 1858 TACGACCTTATCATCGAAAACAGAGGAGGTAACAAAGAGTACGTAGAGGTGAAAGCAACT 1917
|||||||| || ||||||||| |||| ||||| ||||||||| |||||||||||||||||
Sbjct 232 TACGACCTGATAATCGAAAACCGAGGCGGTAAGAAAGAGTACATAGAGGTGAAAGCAACT 291
Query 1918 GTATCCACAGGGAAAGACTATTTCAATTTGTC-AGTGAAGGAATGGGAGTTTGCCAATGA 1976
||||||||| ||||||||||||| |||||| | | ||| ||||||| | ||||| |||||
Sbjct 292 GTATCCACACGGAAAGACTATTTTAATTTGACGA-TGAGGGAATGGCAATTTGCAAATGA 350
Query 1977 GAAAGGAGAGAGTTACGTTATAGCTCATGTTTTATTAGGCAACAGTAATGCCATCCTCAC 2036
|||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 351 GAAAGGAGAGAGTTACTTTATAGCTCACGTTTTGTTAGGCAACAGTAATGCCATCCTCAC 410
Query 2037 ACAACAAAGGAATCTTGTCAAATTACGCCAAGACGGTCATCTCCGGTTATTGATTCTCAT 2096
|||||| ||||| |||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 411 ACAACATAGGAACCTTGTCAAATTATGCCAAGACGGTCATCTCCGGTTATTTATTCTCAT 470
Query 2097 GCCTAGCCAGCGAAACGAGG 2116
||||| ||||||||||||||
Sbjct 471 GCCTAACCAGCGAAACGAGG 490
> Ahg890991 jgi|Araly1|890991|Al_scaffold_0007_2977
Length=6411
Score = 446 bits (241), Expect = 4e-124
Identities = 378/444 (85%), Gaps = 10/444 (2%)
Strand=Plus/Plus
Query 1678 AATTCCGTCTCAACTGACTTCAGC-ATAAGAAATCAGCTTCATACCGGCGCACTTTGGGC 1736
|||||| || || || | |||||| || ||| ||||||||||||||||| ||| ||||||
Sbjct 5956 AATTCCTTCACAGCTAATTTCAGCGAT-AGAGATCAGCTTCATACCGGCACACCTTGGGC 6014
Query 1737 TGCACAGGCGCAAGAGTCCGGTAAAAAAGGTGAAGAAATAGCTTACAGATACTTTGTTGC 1796
|||||| |||||| || |||||| ||||||||||||||| ||||| ||||||||||||||
Sbjct 6015 TGCACAAGCGCAACAGACCGGTAGAAAAGGTGAAGAAATCGCTTATAGATACTTTGTTGC 6074
Query 1797 AAAATATGGCAA-GAAGGCACTGGTTAAATGGGTTAATGAGCATAGTGAAACCGGATTAC 1855
||||| ||||| | |||| ||||||| ||||||||| || || || ||||| || ||||
Sbjct 6075 GAAATACGGCAATG-AGGCTCTGGTTAGATGGGTTAACGACCAGAGCGAAACTGGTTTAC 6133
Query 1856 CTTACGACCTTA-TCATCGAAAACAGAGGAGGTAACAAAGAGTACGTAGAGGTGAAAGCA 1914
||||||||| || | || |||||| | || ||||| ||||||||||||||||||||||||
Sbjct 6134 CTTACGACC-TACTGATTGAAAACCGGGGTGGTAAGAAAGAGTACGTAGAGGTGAAAGCA 6192
Query 1915 ACTGTATCCACAGGGAAAGACTATTTCAATTTGTCAGTGAAGGAATGGGAGTTTGCCAA- 1973
|| || || ||| |||||||||||||||| ||| |||||| ||||||| | |||| |||
Sbjct 6193 ACGGTGTCTACACGGAAAGACTATTTCAACTTGACAGTGAGGGAATGGCAATTTG-CAAG 6251
Query 1974 TGAGAAAGGAGAGAGTTACGTTATAGCTCATGTTTTATTAGGCAACAGTAATGCCATCCT 2033
|||||||||||||| |||| | || ||||||||||| ||||| ||||||||||| |||||
Sbjct 6252 TGAGAAAGGAGAGAATTACATAATTGCTCATGTTTTGTTAGGAAACAGTAATGCAATCCT 6311
Query 2034 CACACAACA-AAGGAATCTTGTCAAATTACGCCAAGACGGTCATCTCCGGTTATTGATTC 2092
|||||| || || || | ||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 6312 CACACAGCATAA-AAACCCGGTCAAGTTATGCCAAGAAGGTCATCTCCGGTTATTGATTC 6370
Query 2093 TCATGCCTAGCCAGCGAAACGAGG 2116
||||||||| |||| |||||||||
Sbjct 6371 TCATGCCTAACCAGAGAAACGAGG 6394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84369892675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5