BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08310.2
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910535 jgi|Araly1|910535|Al_scaffold_0001_789 1386 0.0
> Ahg910535 jgi|Araly1|910535|Al_scaffold_0001_789
Length=936
Score = 1386 bits (750), Expect = 0.0
Identities = 885/948 (93%), Gaps = 17/948 (2%)
Strand=Plus/Plus
Query 413 ATGGGGGATTCTCCTGCTAGTTCAAATAGAGTTAAGCTTCGGGATGGGAGATTCTTAGCT 472
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGGATTCTTCTGCTAGTTCAAATAGAGTTAAGCTTCGGGATGGGAGATTCTTAGCT 60
Query 473 TATAAAGAAAGAGGAGTTCCAAAGGAAAAGGCCAAATACAAGATCATTCTTGTTCATGGC 532
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATAGAGAGAGAGGAGTTCCAAAGGAAAAGGCCAAATACAAGATCATTCTTGTTCATGGC 120
Query 533 TTTGGAAGCTCCAAAGATATGAACTTCTCTGCCTCAAAATTTTTTCAGGAGCTTATAGAA 592
||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct 121 TTTGGAAGCTCCAAAGATATGAACTTCTCTGCCTC-AAA-------A-GAGCTGATAGAA 171
Query 593 GAACTTGAGGTGTACTTGCTATTCTACGACCGTTCTGGATATGGAGCATCAGATTCAAAC 652
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 172 GAACTTAAGGTGTACTTGCTATTCTACGACCGTTCTGGATATGGAGAATCAGATTCAAAC 231
Query 653 ACAAAACGTTCGTTGGAAAGCGAAGTTGAAGACATAGCAGAACTTGCAGATCAGCTGGAG 712
| |||||||||||||||||||||||||| ||||||| ||| ||||||||||| ||| ||
Sbjct 232 ATGAAACGTTCGTTGGAAAGCGAAGTTGATGACATAGTAGACCTTGCAGATCATCTGCAG 291
Query 713 TTAGGACCTAAGTTTTATCTAATTGGAATTTCCATGGGATCTTACCCTACTTGGGGTTGC 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TTAGGACCTAAGTTTTATCTAATTGGAATTTCCATGGGATCTTACCCTACTTGGGGTTGC 351
Query 773 CTAAGACACATACC-TCACAGGTTATCCGGCGTGGCTTTTGTTGCTCCGGTGGTTAATTA 831
|||| ||| ||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 352 CTAAAACATATACCGT-ACAGGCTATCCGGCGTGGCTTTTGTTGCTCCGGTGGTTAATTA 410
Query 832 TCGATGGCCTTCACTTCCGAAGAAGCTAATCAAAAAAGATTATAGGACAGGTATTATCAA 891
||| ||||| || ||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 411 TCGGTGGCCCTCGCTTCCTAAGAAGCTAATCAAAAAAGATTATAGGAGAGGTATTATCAA 470
Query 892 ATGGGGTTTGAGGATATCAAAATATGCACCTGGACTGTTACATTGGTGGATCATTCAAAA 951
|||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct 471 ATGGGGTTTGAGGATATCCAAATATGCACCTGGACTGTTACATTGGTGGGTAATTCAAAA 530
Query 952 GCTCTTCGCTTCAACTAGTTCGGTCCTTGAAAGCAATCCGGTCTACTTCAACAGCCACGA 1011
||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 531 GCTTTTCCCTTCAACTAGTTCAGTCCTTGAAAGCAATCCGGTCTACTTCAACAGCCACGA 590
Query 1012 CATAGAAGTGCTCAAGCGAAAAACTGGTTTTCCCATGCTTACTAAGGAAAAGCTACGGGA 1071
|||||||||||||||||||| ||| || |||||||||||||||||||| ||||| |||
Sbjct 591 CATAGAAGTGCTCAAGCGAACAACCGGATTTCCCATGCTTACTAAGGATTCGCTACTGGA 650
Query 1072 AAGAAATGTTTTCGATACTCTAAGGGACGATTTTATGGTTTGTTTCGGGCAATGGGACTT 1131
||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||
Sbjct 651 AAGAAATGTTTTCGATACTCTAAGGGACGATATCATGGCTTGTTTCGGGAAATGGGACTT 710
Query 1132 CGAACCCGCGGATCTAAGCATCAGTACAA-AGAGCTATATTCACATCTGGCATGGTAAGG 1190
||||||||| || |||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct 711 CGAACCCGCAGACCTAAGCATTAGTA-AAGAGAGCTATATTCACATCTGGCATGGTAAGG 769
Query 1191 AAGACAAAGTTGTTCCATTTCAACTTCAAAGATGCATTCTGCAGAAACAACCTTTGATCA 1250
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 770 AAGACAAAGTTGTTCCATTTCAACTTCAAAGATGCATTCTGCAGAAACAACCTTTGATTA 829
Query 1251 ACTACCACGAAATCCCCCAAGGCGGACATCTGATCGTACACTACGATGGCATTTGCGATA 1310
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 830 ACTACCACGAAATCCCGCAAGGCGGACATCTGATCGTACACTATGATGGCATTTGCGATG 889
Query 1311 CGAT-TCTACG-TGCACTATTGCTCAAGGAAGAACAACAAAAGCTGTA 1356
|||| | |||| | ||||||||||| ||||||||||||||||||||||
Sbjct 890 CGATAT-TACGCT-CACTATTGCTCGAGGAAGAACAACAAAAGCTGTA 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55497486965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5