BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08320.1
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311885 jgi|Araly1|311885|fgenesh1_pm.C_scaffold_1000665 1509 0.0
> Ahg311885 jgi|Araly1|311885|fgenesh1_pm.C_scaffold_1000665
Length=1830
Score = 1509 bits (817), Expect = 0.0
Identities = 850/866 (98%), Gaps = 2/866 (0%)
Strand=Plus/Plus
Query 668 AGAGGAAGGCTACAACTTCAGGCAAACAGCTTGATGCTAAGACGT-TGAGACGTTTGGCC 726
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 38 AGAGGAAGGCTACAACTTCAGGCAAACAGCTTGATGCTAAGAC-TCTGAGACGTTTGGCC 96
Query 727 CAAAATAGAGAAGCTGCTCGCAAAAGCCGTCTTAGGAAAAAGGCGTATGTGCAACAGCTA 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 CAAAATAGAGAAGCTGCTCGCAAAAGCCGTCTTAGGAAAAAGGCGTATGTGCAACAGCTA 156
Query 787 GAATCAAGTAGGATAAAGCTTTCCCAATTGGAGCAAGAACTTCAGCGAGCTCGTTCTCAG 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 GAATCAAGTAGGATAAAGCTTTCCCAATTGGAGCAAGAACTTCAGCGAGCTCGTTCTCAG 216
Query 847 GGGCTGTTCATGGGTGGTTGTGGACCACCAGGACCTAACATCACTTCCGGAGCTGCAATA 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 GGGCTGTTCATGGGTGGTTGTGGACCACCAGGACCTAACATCACTTCCGGAGCTGCAATA 276
Query 907 TTTGACATGGAATATGGGAGATGGCTAGAGGATGATAACCGGCATATGTCGGAGATTCGA 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TTTGACATGGAATATGGGAGATGGCTAGAGGATGATAACCGGCATATGTCGGAGATTCGA 336
Query 967 ACCGGTCTTCAGGCTCATTTATCTGACAATGATTTAAGGTTGATCGTTGACGGTTACATT 1026
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 337 ACCGGTCTTCAGGCTCATTTATCGGACAATGATTTAAGGTTGATCGTTGACGGTTACATT 396
Query 1027 GCTCATTTTGATGAGATATTCCGATTAAAAGCCGTGGCAGCGAAAGCCGATGTTTTTCAC 1086
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 397 GCTCATTTTGATGAGATATTCCGATTAAAAGCCGTGGCCGCAAAAGCGGATGTTTTTCAC 456
Query 1087 CTCATCATTGGGACATGGATGTCCCCAGCCGAACGTTGTTTTATTTGGATGGCTGGTTTC 1146
|||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 457 CTCATCATCGGAACATGGATGTCCCCAGCTGAACGTTGTTTTATTTGGATGGCCGGTTTC 516
Query 1147 CGTCCATCCGACCTAATCAAGATATTGGTGTCGCAAATGGATCTATTGACGGAGCAACAA 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CGTCCATCCGACCTAATCAAGATATTGGTGTCGCAAATGGATCTATTGACGGAGCAACAA 576
Query 1207 CTGATGGGAATATATAGCCTACAACACTCGTCGCAACAAGCAGAGGAGGCTCTCTCGCAA 1266
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 577 CTGATGGGAATATATAGCCTACAACACTCGTCACAACAAGCAGAGGAGGCTCTCTCGCAA 636
Query 1267 GGCCTCGAACAACTTCAGCAATCTCTCATCGATACTCTCGCCGCATCTCCAGTCATTGAC 1326
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 637 GGCCTCGAACAACTTCAGCAATCTCTCATTGATACTCTCGCCGCATCTCCAGTCATTGAC 696
Query 1327 GGAATGCAACAAATGGCTGTCGCTCTCGGAAAGATCTCTAATCTCGAAGGCTTTATCCGC 1386
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 697 GGAATGCAACAAATGGCTGTCGCTCTCGGCAAGATCTCTAATCTCGAAGGCTTTATCCGC 756
Query 1387 CAGGCTGATAACTTGAGGCAGCAGACCGTTCACCAGCTGAGGCGGATCTTGACCGTCCGA 1446
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 757 CAGGCTGATAACTTGAGGCAGCAGACCGTTCACCAGCTGAGGCGGATCCTGACCGTCCGA 816
Query 1447 CAAGCTGCACGGTGTTTCCTAGTCATCGGAGAGTACTATGGACGGCTCAGAGCTCTTAGC 1506
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 CAAGCCGCACGGTGTTTCCTAGTCATCGGAGAGTACTATGGACGGCTCAGAGCTCTTAGC 876
Query 1507 TCCCTTTGGTTGTCACGCCCACGAGA 1532
|||||||||||||| |||||||||||
Sbjct 877 TCCCTTTGGTTGTCTCGCCCACGAGA 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68676711735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5