BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08340.1
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470895 jgi|Araly1|470895|fgenesh2_kg.1__849__AT1G08340.1 2002 0.0
Ahg344504 jgi|Araly1|344504|fgenesh1_pg.C_scaffold_4000846 654 0.0
> Ahg470895 jgi|Araly1|470895|fgenesh2_kg.1__849__AT1G08340.1
Length=1351
Score = 2002 bits (1084), Expect = 0.0
Identities = 1237/1309 (94%), Gaps = 18/1309 (1%)
Strand=Plus/Plus
Query 97 AGAGGAGAGATAGAGAGACTTAGAAAGCTCGGTAAGTCCGAACTTTGGTGGTTCGGCGGC 156
|||| ||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct 45 AGAGAAGAGATAGAGAGACTTAGAAAGCGCGGTAAGACCGAACTTTGGCGGTTCGGCGGC 104
Query 157 TCTACGTCGTCTGTAGGTCGAGTCGTCCTGGAGCTCGCCCGTTGTTTCTCGACGGCGGAG 216
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 TCTACGTCGTCTGTTGCTCGAGTCGTCCTGGAGCTCGCCCGTTGTTTCTCGACGGCGGAG 164
Query 217 GTGGAAGACAACGACCGACCAGCCATGGACATTGGCGGTCCAACCAATATCCGCCACGTG 276
|||||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 165 GTGGAAGAAAACGACCGTCCAGCCATGGATATTGGAGGTCCTACCAATATCCGCCACGTG 224
Query 277 GCTCACGTTACCTTCGATCGCTTCGATGGCTTCCTCGGCCTTCCCTCTGAGTTCGAGCCT 336
|||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct 225 GCTCACGTTACCTTCGATCGTTTCAATGGCTTCCTCGGTCTTCCCTCTGAGTTCGAGCCT 284
Query 337 GATGTCCCCAGAAAAGCTCCCAGTGCAAGTGCAACGGTGTTTGGGGTATCGACAGAGTCA 396
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 GATGTCCCTACAAAAGCTCCCAGTGCAAGTGCAACGGTGTTTGGGGTATCGACAGAGTCA 344
Query 397 ATGCAGTTATCATACGACTCGAGAGGGAACTGTGTTCCTGTGATACTGTTGCTATTGCAG 456
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 345 ATGCAGTTATCATACGACTCGAGAGGGAATTGTGTTCCTGTGATACTGTTGCTATTGCAG 404
Query 457 AGCCGGCTTTATGATCAAGGAGGCTTGCAGGCAGAAGGAGTATTCAGAATCACTGGAGAG 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 AGCCGGCTTTATGATCAAGGAGGCTTGCAGGCAGAAGGAGTATTCAGAATCACTGGAGAG 464
Query 517 AACAGCGAGGAAGAGTTTGTTAGGGAGCAGCTTAATAAAGGGATCATACCTGATGGGATT 576
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 465 AACAGCGAGGAAGAGTTTGTTAGGGAGCAGCTTAATAAAGGGATCATACCAGATGGAATT 524
Query 577 GATGTCCATTGTTTAGCCGGTCTTATTAAGGCTTGGTTCAGAGAGCTGCCGAGAGGGGTA 636
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 525 GATGTCCATTGTTTAGCCGGACTTATTAAGGCTTGGTTCAGAGAGCTGCCGAGAGGTGTT 584
Query 637 CTGGATCCTCTGCCATCGGAGCAAGTGATGCAGTGTGAGTCAGATGAGGATTTTGTCAAA 696
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 585 CTTGATCCTCTGCCATCGGAGCAAGTGATGCAGTGTGAGTCAGATGAGGATTTTGTTAAG 644
Query 697 GTTGTGAGACTTTTACCTCAAACAGAAGCTTCTCTTCTCAATTGGGCCATCAATCTCATG 756
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GTTGTGAGACTCTTACCTCAAACAGAAGCTTCTCTTCTCAATTGGGCCATCAATCTCATG 704
Query 757 GCTGATGTTATTCAGTTTGAGCATGTTAATAAGATGAACTCTCGTAACCTTGCTTTAGTC 816
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GCTGATGTTGTTCAGTTTGAGCATGTTAATAAGATGAACTCTCGTAACCTTGCTTTAGTC 764
Query 817 TTTGCCCCCAACATGTCTCAGATGGCAGACCCTTTAACTGCATTGATGTATGCGGTCCAA 876
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TTTGCCCCTAATATGTCTCAGATGGCAGACCCTTTAACTGCATTGATGTATGCGGTCCAA 824
Query 877 GTGATGAAGTTGCTCAAGAGCCTCACAGAGAAGACTGTGAGAGAAAGGGAAGCTTCCTCT 936
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 825 GTGATGAAGTTGCTCAAGAGCCTCACAGAGAAAACTGTGAGAGAAAGGGAAGCTTCCTCT 884
Query 937 TCTGTGGTTGACagaagatgtagcaaagaagccgaagatggcgagaaagaaaaagacaat 996
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 885 TCTGTGGTTGACAGAAGATGTAGCAAAGAAGCTGAAGATGGCGAGAAAGAAGAAGACAAT 944
Query 997 gaagaggaagaagaagatgaagaagaggaggaagaagaagaagatgaagatgaagatgaa 1056
||||| || |||||||| || ||||| || |||||||||||||||||||||||||| |||
Sbjct 945 GAAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGATGAAGATGAAGAAGAA 1004
Query 1057 gaagaagaaggagaTGGTGTGTACATAATTAAGGAGGAAGAAGCATCAGAGATAATAAAA 1116
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1005 GAAGAAGAAGGAAATGGTGTGTACATAATTAAGGAGGAAGAAGCATCAGAGAGAATGAAA 1064
Query 1117 GTGGTTGCTGATGAACACAAGTCAGGAAGCATAAAGAGTGAGTTTGAGGGATCTAGTGCT 1176
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1065 GTGGTTGCTGATGAACACAAGCCAGGAAGCATGAAGAGTGAGTTTGAGGGATCTAGTGCT 1124
Query 1177 ACGGATTCAAAGGGAGATAATGGAGTTGTGCAGCCACCCATTTGCAGCTCGAACCCGTA- 1235
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1125 TCGGATTCAAAGGGAGATAATGGAGTTGTGCAGCCACCCATTTGCAGTTCGAACC-GTAT 1183
Query 1236 -GGAAGCAAGTGAAG-TTGATGCttttttt-----ctttttAGTTTACTGTGTGTTTTGG 1288
|||| |||||||| |||||| ||||||| |||||||||||||||||||||| ||
Sbjct 1184 AGGAAACAAGTGAAAATTGATGTTTTTTTTTTTTTCTTTTTAGTTTACTGTGTGTTT-GG 1242
Query 1289 ATTGCTTTATTTGATT-GCATAATGCATATGTAACTTCTAAGTGATGTAGTTTGTTGTTG 1347
|||||| ||||||||| |||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 1243 ATTGCTATATTTGATTTGCATTATGCATATGTAACTTCTAAGTAATGTAGTTTGCTGTTG 1302
Query 1348 AATGGTGATATGAAATGA--A---GA--CTAACTCTGTGGGATGAACAA 1389
||||||||||||| |||| | || |||||||||||||||||||||
Sbjct 1303 AATGGTGATATGATATGACTATATGAGACTAACTCTGTGGGATGAACAA 1351
> Ahg344504 jgi|Araly1|344504|fgenesh1_pg.C_scaffold_4000846
Length=951
Score = 654 bits (354), Expect = 0.0
Identities = 583/694 (84%), Gaps = 14/694 (2%)
Strand=Plus/Plus
Query 219 GGAAGACAACGACCGACCAGCCATGGACATTGG-CGGTCCAACCAATATCCGCCACGTGG 277
||| || ||||| |||| ||||||||||||||| | | |||||||||||| | |||||||
Sbjct 6 GGAGGAAAACGAACGACAAGCCATGGACATTGGTC-GCCCAACCAATATCTGTCACGTGG 64
Query 278 CTCACGTTACCTTCGATCGCTTCGATGGCTTCCTCGGCCTTCCCTCTGAGTTCGAGCCTG 337
|||| || || | ||||||||||||||| || || || ||||| ||||| || ||||| |
Sbjct 65 CTCATGTAACATACGATCGCTTCGATGGTTTTCTTGGTCTTCCTTCTGAATTTGAGCCCG 124
Query 338 ATGTCCCCAGAAAAGCTCCC-AGTGCAAGTGCAACGGTGTTTGGGGTATCGACAGAGTCA 396
| || |||| | |||| ||| |||||||||||||| ||||||||||| || ||||||||
Sbjct 125 ACGTACCCA-AGAAGCCCCCTAGTGCAAGTGCAACAGTGTTTGGGGTTTCTACAGAGTCG 183
Query 397 ATGCAGTTATCATACGACTCGAGAGGGAACTGTGTTCCTGT-GATACTGTTGCTATTGCA 455
||||||||||||||||||||||||||||| |||||||| | |||||| |||||| ||
Sbjct 184 ATGCAGTTATCATACGACTCGAGAGGGAATTGTGTTCC-GACGATACTCACGCTATTACA 242
Query 456 GAGCCGGCTTTATGATCAAGGAGGCTTGCAGGCAGAAGGAGTATTCAGAATCACTGGAGA 515
||||| || || ||||||||||| ||||||| ||||||| | ||||||||||| || ||
Sbjct 243 AAGCCGACTATACGATCAAGGAGGTTTGCAGGTAGAAGGAATTTTCAGAATCACAGGGGA 302
Query 516 GAACAGCGAGGAAGAGTTTGTTAGGGA-GCAGCTTAAT-AAAGG-GATCATACCTGATGG 572
||||| |||||||||||| |||| || | || |||| ||||| | || |||| || ||
Sbjct 303 TAACAGTGAGGAAGAGTTTATTAGAGAAG-AG-TTAAACAAAGGAG-TCCTACCAGAAGG 359
Query 573 GATTGATGTCCATTGTTTAGCCGGTCTTATTAAGGCTTGGTTCAGAGAGCTGCCGAGAGG 632
|||||| |||| ||| | ||||| ||||| ||||||||||||||||| | ||||||||
Sbjct 360 CATTGATATCCACTGTCTCGCCGGACTTATAAAGGCTTGGTTCAGAGAATTACCGAGAGG 419
Query 633 GGTACTGGATCCTCTGCCATCGGAGCAAGTGATGCAGTGTGAGTCAGATGAGGATTTTGT 692
|||||| ||| |||| ||||| | |||||||||||||| |||||||| |||||||| ||
Sbjct 420 GGTACTCGATTCTCTACCATCTCAACAAGTGATGCAGTGCGAGTCAGAGGAGGATTTCGT 479
Query 693 CAAAGTTGTGAGACTTTTACCTCAAACAGAAGCTTCTCTTCTCAATTGGGCCATCAATCT 752
|| ||||||||||| || || ||||| |||||||||||||| |||||||| ||||||||
Sbjct 480 GAAGGTTGTGAGACTCTTGCCGCAAACGGAAGCTTCTCTTCTGAATTGGGCAATCAATCT 539
Query 753 CATGGCTGATGTTATTCAGTTTGA-GCATGTTAATAAGATGAACTCTCGTAACCTTGCTT 811
||||||||| || | ||||||| | |||| |||||||||| ||| ||||| |||||||
Sbjct 540 AATGGCTGATTTTGTAGAGTTTGAAG-ATGTCAATAAGATGACCTCCCGTAATCTTGCTT 598
Query 812 TAGTCTTTGCCCCCAACATGTCTCAGATGGCAGACCCTTTAACTGCATTGATGTATGCGG 871
||||||| || ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 599 TAGTCTTCGCACCCAACATGTCTCAGATGGCAGATCCTTTAACAGCATTAATGTATGCGG 658
Query 872 TCCAAGTGATGAAGTTGCTCAAGAGCCTCACAGA 905
| ||||||||||| ||||| | || |||||||||
Sbjct 659 TGCAAGTGATGAACTTGCTGAGGAACCTCACAGA 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53783425940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5