BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08350.2
Length=2013
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919579 jgi|Araly1|919579|scaffold_100860.1 2765 0.0
> Ahg919579 jgi|Araly1|919579|scaffold_100860.1
Length=1810
Score = 2765 bits (1497), Expect = 0.0
Identities = 1699/1799 (94%), Gaps = 3/1799 (0%)
Strand=Plus/Plus
Query 70 AAGAGTGCCAATTCATGGCGCAATTTCTGCTTACTGTACTACAAGTCCTACTTGCATTGA 129
||| ||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 7 AAGTGTGTCAATTCATGGCGCCATTTCTGCTTACTGTACTACAAGTCCTACTCGCATTGA 66
Query 130 CCTTCTGGATCGGAATCGGATCAGGCTCGTCGAACCATTATAATGCCGGCGATCATGTCC 189
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 67 CCTTCTGGATCGGAATCGGATCAGGCTCGTCGAACCGTTATAATGCCGGCGATCATGTCC 126
Query 190 CTTTGTTCGTCAACAAAGTGGGTCCTCTCCACAATCCGAGTGAGACCTATCAATACTATG 249
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 127 CTTTGTTCGTCAACAAAGTGGGTCCTCTCCGCAATCCAAGTGAGACCTATCAATACTATG 186
Query 250 ATTTGCCGTTCTGCCGTCGAGGGCCTGTGATTGAGAAACAGGAAACTCTTGGGGAAGTTC 309
||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 187 ATTTGCCATTCTGCCGTCCAGAGCCTGTGATTGAGAAACAGGAAACTCTTGGGGAAGTTC 246
Query 310 TTAATGGTGATCGTTTAATGAGCTCTTTATATAAGCTGAAATTTAGGGAGGACAAAACTC 369
|||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 247 TTAATGGTGACCGATTAATGAGCTCACTATATGAGCTGAAATTTAGGGAGGACAAAACTC 306
Query 370 ATTTTGTATTGTGCCGGAAGAGATTAACATCGAGTGATATTGCCAGGTTCAGAGATATTA 429
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 307 ATCTTGTATTGTGCCGTAAGAGATTAACATCGAGTGATGTTGCCAGGTTCAGAGATACTA 366
Query 430 TTGCTCAAGATTACTACTTTCAAATGTACTACGATGATCTCCCTTTGTGGGGATTTGTTG 489
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 367 TTGCTCAAGATTACTACTTTCAAATGTATTACGATGATCTCCCGTTGTGGGGATTTGTTG 426
Query 490 GAAAAGTAGAGGGAGATTATTTTGGTCAAGGGGAGAAGCATACTAAGTATTATATATTCA 549
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 427 GAAAAGTAGAGGGAGATTATTTTGGTCAAGAGGAGAAGCACACTAAGTATTATATATTCA 486
Query 550 GTCACTTAAAGTTCAATGTTCTGTACAATGCAGACAAAGTTATTGAGATCAACAGTTTTA 609
||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 487 GTCACTTAAAGTTTAATGTTCTGTACAATGCAGACGAAGTTATTGAAATCAACAGTTTTA 546
Query 610 GTGATCCGAGTTATATGGTTGATATATCCGAGAACACTGAGATTGATGTTCAATTTACAT 669
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 547 GTGATCCGAGTTATCTGGTTGATATATCCGAGAACACTGAGACTGATGTTCAATTTACAT 606
Query 670 ACTCGGTTTCTTGGAATCTGACTTCAGAACGCTCTGAGACAAGAATGAATAAGTACTCCC 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 ACTCGGTTTCTTGGAATCTGACTTCAGAACGCTCTGAGACAAGAATGAATAAGTACTCCC 666
Query 730 GGGCGTCGTTTCATCCTATCAGCCAGAAGATTCACTTCTTCTCATTTCTCAACTCGATAA 789
||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 667 AGGCGTCGCTTCATCCGATCAGCCAGAAGATTCACTTCTTCTCATTTCTTAACTCGATAA 726
Query 790 CTGTTGTTGTTTTGTTAATTGGACTTATATCTTTTCTCTTCATGCGCCATCTCAAGAATG 849
||||||| |||||||||||||||||| | ||||| |||||| ||||||||||||||||||
Sbjct 727 CTGTTGTAGTTTTGTTAATTGGACTTCTTTCTTTGCTCTTCGTGCGCCATCTCAAGAATG 786
Query 850 AACTAAGAAGTTACTCTATCGGAGATGAAGAAGAGAGAAAGGAAGCAGGTTGGAAACTCG 909
|||||||||||| ||| || |||||||||||||| | |||||||| ||||||||||| |
Sbjct 787 AACTAAGAAGTTCCTCGATTGGAGATGAAGAAGAAAAAAAGGAAGTGGGTTGGAAACTTG 846
Query 910 TACATAGTGATGTATTTCGATGTCCTCGGAACATCAGCTGGCTTTGTGCAATCTTAGGAA 969
|||| |||||||||||| |||||||||||||| || || ||| ||||| |||||||||
Sbjct 847 TACAAAGTGATGTATTTAGATGTCCTCGGAACGTCTCCTTGCTCTGTGCGTTCTTAGGAA 906
Query 970 CTGGTACTCAGTTGCTAATCTTGATTATTGCTCTATTTGCATTGGCCTTCACCGGTTTTC 1029
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 CTGGTACTCAGTTGCTAATCTTGATTATTGCTCTATTTGCATTGGCCTTCACCGGTTTTT 966
Query 1030 TCTACCCATACAATCGTGGAATGCTGTTGACTTCTCTCGTCATCATGTACACTCTAACAT 1089
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 TATACCCATACAATCGCGGAATGCTGTTGACTTCTCTCGTCATCATGTACACTCTAACAT 1026
Query 1090 CAATAGTGGCTGGTTACACATCTACTTCTTTCCATAGCCAATTCGAGGGAAATAAACAGA 1149
| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1027 CCGTAGTGGCTGGTTACACATCTGCTTCTTTCCATAGCCAATTCGAGGGAAACAAACAGA 1086
Query 1150 AAAGGAGTGTTCGTCTTGCTGGGATCCTCTATCCGGTTCCTTTCTTCATAATACTTTCGG 1209
|||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||
Sbjct 1087 AAAGGAGTGTTCGTCTTGCTGGGATCCTCTATCCTGTCCCTTTCTTGATAATAGTTTCGG 1146
Query 1210 TTCTCAACACTGTGGCAATTACTTATGGGGCAACAGCTGCACTCCCCTTTGGCACAATAG 1269
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1147 TCCTCAACACTGTGGCAATCACTTACGGGGCAACAGCTGCACTCCCCTTTGGCACAATAG 1206
Query 1270 TCATCATCATACT-CATTTTCACTCTTTTGAATATCCCATTTCTCATGTTGGGAGGAGTG 1328
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 TCATCATCAT-CTTCATTTTCACTCTTTTGAATATCCCATTTCTCATGTTGGGAGGAGTT 1265
Query 1329 TTAGGTAACCGATTTGGATTATTAGAGTTTCAACCCCCATCCGCTGTTAAAAGAAACCCC 1388
||||||||||| || |||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1266 TTAGGTAACCGGTTCGGATTATTAGAGTTTCAACCTCCAACCGCTGTTAAAAGAAACCCC 1325
Query 1389 CGAGAAATTCCACCACAGAATTGGTACCGTAGAAAGCTGTATCAGGTGTTTCTTGGAGGC 1448
|| |||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||
Sbjct 1326 CGTGAAATTCCACTTCAGAATTGGTATCGTAGAAAGCTGTACCAGTTGTTTCTTGGAGGC 1385
Query 1449 TTTGTACCTTTCAGTGCAGTTGTTCTCGAATGGCACCAACTCTATGCAAGCTTGTGGGGA 1508
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1386 TTTGTACCTTTCATTGCAGTTGTTCTCGAGTGGCACCAACTCTATGCAAGCTTGTGGGGA 1445
Query 1509 TTTAAGATATATACCTCGCCTGGAATAATGCTTTTTACATTCATTGTGCTTATCTTCTTG 1568
|| || |||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1446 TTCAAAATATATACCTCGCCTGGAATAATGCTTTTTACATTCGCTGTGCTCATCTTCTTG 1505
Query 1569 AGTTCGAGTGTCGGTATTATCTTGACCTACATTCAGCTATCCGGTGAAGATCATGAATGG 1628
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 AGTACGAGTGTCGGTATTATCTTGACCTACATTCAGCTATCCGGTGAAGATCATGAATGG 1565
Query 1629 TGGTGGAGATCGATATTGTGCGGAGGATTCACAGCGGTGTTCATGTATGGGTATGGAGTA 1688
|||||||| ||||||||||| ||||||||| ||||||| |||||||||| ||||||||||
Sbjct 1566 TGGTGGAGGTCGATATTGTGTGGAGGATTCTCAGCGGTCTTCATGTATGCGTATGGAGTA 1625
Query 1689 TTGTTCTATCTCAGGTCAGACATGACTGGATTTCTGCAGCTGAGCTTTTACTTAGGATAC 1748
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1626 TTGTTCTATCTCAGGTCTGACATGACTGGATTTCTGCAGCTGAGCTTTTACTTAGGATAT 1685
Query 1749 ACTGCTTTGTTATGTTACGCCCTCTTCTTGGTTCTTGGAACCATAAGTTTCTTGGCTTCT 1808
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1686 ACTGCTTTGTTCTGTTACGCTCTCTTCTTGGTTCTTGGAACCATAAGTTTCTTGGCTTCT 1745
Query 1809 TTGATGTTTATTCGCCACATCTATCGTTCTGTCAAGCTTGAATAACTCCCAAGAACTAA 1867
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1746 TTGATGTTTATTCGCCACATCTATCGTTCTGTCAAGGTTGAATAACTCC-AAGAACTAA 1803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75685316815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5