BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08350.2 Length=2013 Score E Sequences producing significant alignments: (Bits) Value Ahg919579 jgi|Araly1|919579|scaffold_100860.1 2765 0.0 > Ahg919579 jgi|Araly1|919579|scaffold_100860.1 Length=1810 Score = 2765 bits (1497), Expect = 0.0 Identities = 1699/1799 (94%), Gaps = 3/1799 (0%) Strand=Plus/Plus Query 70 AAGAGTGCCAATTCATGGCGCAATTTCTGCTTACTGTACTACAAGTCCTACTTGCATTGA 129 ||| ||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 7 AAGTGTGTCAATTCATGGCGCCATTTCTGCTTACTGTACTACAAGTCCTACTCGCATTGA 66 Query 130 CCTTCTGGATCGGAATCGGATCAGGCTCGTCGAACCATTATAATGCCGGCGATCATGTCC 189 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 67 CCTTCTGGATCGGAATCGGATCAGGCTCGTCGAACCGTTATAATGCCGGCGATCATGTCC 126 Query 190 CTTTGTTCGTCAACAAAGTGGGTCCTCTCCACAATCCGAGTGAGACCTATCAATACTATG 249 |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 127 CTTTGTTCGTCAACAAAGTGGGTCCTCTCCGCAATCCAAGTGAGACCTATCAATACTATG 186 Query 250 ATTTGCCGTTCTGCCGTCGAGGGCCTGTGATTGAGAAACAGGAAACTCTTGGGGAAGTTC 309 ||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 187 ATTTGCCATTCTGCCGTCCAGAGCCTGTGATTGAGAAACAGGAAACTCTTGGGGAAGTTC 246 Query 310 TTAATGGTGATCGTTTAATGAGCTCTTTATATAAGCTGAAATTTAGGGAGGACAAAACTC 369 |||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 247 TTAATGGTGACCGATTAATGAGCTCACTATATGAGCTGAAATTTAGGGAGGACAAAACTC 306 Query 370 ATTTTGTATTGTGCCGGAAGAGATTAACATCGAGTGATATTGCCAGGTTCAGAGATATTA 429 || ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| || Sbjct 307 ATCTTGTATTGTGCCGTAAGAGATTAACATCGAGTGATGTTGCCAGGTTCAGAGATACTA 366 Query 430 TTGCTCAAGATTACTACTTTCAAATGTACTACGATGATCTCCCTTTGTGGGGATTTGTTG 489 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 367 TTGCTCAAGATTACTACTTTCAAATGTATTACGATGATCTCCCGTTGTGGGGATTTGTTG 426 Query 490 GAAAAGTAGAGGGAGATTATTTTGGTCAAGGGGAGAAGCATACTAAGTATTATATATTCA 549 |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 427 GAAAAGTAGAGGGAGATTATTTTGGTCAAGAGGAGAAGCACACTAAGTATTATATATTCA 486 Query 550 GTCACTTAAAGTTCAATGTTCTGTACAATGCAGACAAAGTTATTGAGATCAACAGTTTTA 609 ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 487 GTCACTTAAAGTTTAATGTTCTGTACAATGCAGACGAAGTTATTGAAATCAACAGTTTTA 546 Query 610 GTGATCCGAGTTATATGGTTGATATATCCGAGAACACTGAGATTGATGTTCAATTTACAT 669 |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 547 GTGATCCGAGTTATCTGGTTGATATATCCGAGAACACTGAGACTGATGTTCAATTTACAT 606 Query 670 ACTCGGTTTCTTGGAATCTGACTTCAGAACGCTCTGAGACAAGAATGAATAAGTACTCCC 729 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 607 ACTCGGTTTCTTGGAATCTGACTTCAGAACGCTCTGAGACAAGAATGAATAAGTACTCCC 666 Query 730 GGGCGTCGTTTCATCCTATCAGCCAGAAGATTCACTTCTTCTCATTTCTCAACTCGATAA 789 ||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 667 AGGCGTCGCTTCATCCGATCAGCCAGAAGATTCACTTCTTCTCATTTCTTAACTCGATAA 726 Query 790 CTGTTGTTGTTTTGTTAATTGGACTTATATCTTTTCTCTTCATGCGCCATCTCAAGAATG 849 ||||||| |||||||||||||||||| | ||||| |||||| |||||||||||||||||| Sbjct 727 CTGTTGTAGTTTTGTTAATTGGACTTCTTTCTTTGCTCTTCGTGCGCCATCTCAAGAATG 786 Query 850 AACTAAGAAGTTACTCTATCGGAGATGAAGAAGAGAGAAAGGAAGCAGGTTGGAAACTCG 909 |||||||||||| ||| || |||||||||||||| | |||||||| ||||||||||| | Sbjct 787 AACTAAGAAGTTCCTCGATTGGAGATGAAGAAGAAAAAAAGGAAGTGGGTTGGAAACTTG 846 Query 910 TACATAGTGATGTATTTCGATGTCCTCGGAACATCAGCTGGCTTTGTGCAATCTTAGGAA 969 |||| |||||||||||| |||||||||||||| || || ||| ||||| ||||||||| Sbjct 847 TACAAAGTGATGTATTTAGATGTCCTCGGAACGTCTCCTTGCTCTGTGCGTTCTTAGGAA 906 Query 970 CTGGTACTCAGTTGCTAATCTTGATTATTGCTCTATTTGCATTGGCCTTCACCGGTTTTC 1029 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 907 CTGGTACTCAGTTGCTAATCTTGATTATTGCTCTATTTGCATTGGCCTTCACCGGTTTTT 966 Query 1030 TCTACCCATACAATCGTGGAATGCTGTTGACTTCTCTCGTCATCATGTACACTCTAACAT 1089 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 967 TATACCCATACAATCGCGGAATGCTGTTGACTTCTCTCGTCATCATGTACACTCTAACAT 1026 Query 1090 CAATAGTGGCTGGTTACACATCTACTTCTTTCCATAGCCAATTCGAGGGAAATAAACAGA 1149 | |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 1027 CCGTAGTGGCTGGTTACACATCTGCTTCTTTCCATAGCCAATTCGAGGGAAACAAACAGA 1086 Query 1150 AAAGGAGTGTTCGTCTTGCTGGGATCCTCTATCCGGTTCCTTTCTTCATAATACTTTCGG 1209 |||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||| Sbjct 1087 AAAGGAGTGTTCGTCTTGCTGGGATCCTCTATCCTGTCCCTTTCTTGATAATAGTTTCGG 1146 Query 1210 TTCTCAACACTGTGGCAATTACTTATGGGGCAACAGCTGCACTCCCCTTTGGCACAATAG 1269 | ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 1147 TCCTCAACACTGTGGCAATCACTTACGGGGCAACAGCTGCACTCCCCTTTGGCACAATAG 1206 Query 1270 TCATCATCATACT-CATTTTCACTCTTTTGAATATCCCATTTCTCATGTTGGGAGGAGTG 1328 |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1207 TCATCATCAT-CTTCATTTTCACTCTTTTGAATATCCCATTTCTCATGTTGGGAGGAGTT 1265 Query 1329 TTAGGTAACCGATTTGGATTATTAGAGTTTCAACCCCCATCCGCTGTTAAAAGAAACCCC 1388 ||||||||||| || |||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 1266 TTAGGTAACCGGTTCGGATTATTAGAGTTTCAACCTCCAACCGCTGTTAAAAGAAACCCC 1325 Query 1389 CGAGAAATTCCACCACAGAATTGGTACCGTAGAAAGCTGTATCAGGTGTTTCTTGGAGGC 1448 || |||||||||| ||||||||||| |||||||||||||| ||| |||||||||||||| Sbjct 1326 CGTGAAATTCCACTTCAGAATTGGTATCGTAGAAAGCTGTACCAGTTGTTTCTTGGAGGC 1385 Query 1449 TTTGTACCTTTCAGTGCAGTTGTTCTCGAATGGCACCAACTCTATGCAAGCTTGTGGGGA 1508 ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1386 TTTGTACCTTTCATTGCAGTTGTTCTCGAGTGGCACCAACTCTATGCAAGCTTGTGGGGA 1445 Query 1509 TTTAAGATATATACCTCGCCTGGAATAATGCTTTTTACATTCATTGTGCTTATCTTCTTG 1568 || || |||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 1446 TTCAAAATATATACCTCGCCTGGAATAATGCTTTTTACATTCGCTGTGCTCATCTTCTTG 1505 Query 1569 AGTTCGAGTGTCGGTATTATCTTGACCTACATTCAGCTATCCGGTGAAGATCATGAATGG 1628 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1506 AGTACGAGTGTCGGTATTATCTTGACCTACATTCAGCTATCCGGTGAAGATCATGAATGG 1565 Query 1629 TGGTGGAGATCGATATTGTGCGGAGGATTCACAGCGGTGTTCATGTATGGGTATGGAGTA 1688 |||||||| ||||||||||| ||||||||| ||||||| |||||||||| |||||||||| Sbjct 1566 TGGTGGAGGTCGATATTGTGTGGAGGATTCTCAGCGGTCTTCATGTATGCGTATGGAGTA 1625 Query 1689 TTGTTCTATCTCAGGTCAGACATGACTGGATTTCTGCAGCTGAGCTTTTACTTAGGATAC 1748 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1626 TTGTTCTATCTCAGGTCTGACATGACTGGATTTCTGCAGCTGAGCTTTTACTTAGGATAT 1685 Query 1749 ACTGCTTTGTTATGTTACGCCCTCTTCTTGGTTCTTGGAACCATAAGTTTCTTGGCTTCT 1808 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1686 ACTGCTTTGTTCTGTTACGCTCTCTTCTTGGTTCTTGGAACCATAAGTTTCTTGGCTTCT 1745 Query 1809 TTGATGTTTATTCGCCACATCTATCGTTCTGTCAAGCTTGAATAACTCCCAAGAACTAA 1867 |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 1746 TTGATGTTTATTCGCCACATCTATCGTTCTGTCAAGGTTGAATAACTCC-AAGAACTAA 1803 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75685316815 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5