BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08360.1
Length=949
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919580 jgi|Araly1|919580|scaffold_100861.1 1120 0.0
Ahg481757 jgi|Araly1|481757|fgenesh2_kg.4__817__AT2G27530.1 754 0.0
Ahg894117 jgi|Araly1|894117|Al_scaffold_0006_2113 575 2e-163
> Ahg919580 jgi|Araly1|919580|scaffold_100861.1
Length=694
Score = 1120 bits (606), Expect = 0.0
Identities = 660/687 (96%), Gaps = 0/687 (0%)
Strand=Plus/Plus
Query 56 GCTAAATTGAGACAAGCTCAAAATGAGTAAGCTTCAGAGTGAGGCCGTTCGTGAAGCCAT 115
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1 GCTAAATTGAGACAAGCTCAAAATGAGTAAGCTTCAGAGTGAGGCCGTGAGAGAAGCCAT 60
Query 116 CACTACTATCACAGGGAAATCCGAGGCAAAGAAACGTAACTTTGTCGAGACTATTGAGCT 175
||||| ||||||||| |||||||| |||||||||||||||||||| |||||| |||||||
Sbjct 61 CACTATTATCACAGGTAAATCCGATGCAAAGAAACGTAACTTTGTGGAGACTGTTGAGCT 120
Query 176 CCAGATCGGTCTGAAGAACTATGACCCTCAAAAGGACAAGCGTTTCAGTGGATCTGTCAA 235
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 121 CCAGATCGGTCTGAAGAACTATGATCCTCAGAAGGACAAGCGTTTCAGTGGATCTGTCAA 180
Query 236 GTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGT 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 GTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAACATGT 240
Query 296 TGAAGAGGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTTAA 355
||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 241 TGAAGAGGCTGAGAAAATGGGACTGGAAAATATGGATGTTGAGTCTCTAAAAAAGCTTAA 300
Query 356 CAAGAACAAGAAACTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGA 415
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAAAAACAAGAAACTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGA 360
Query 416 GTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGGAAAATT 475
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 361 GTCTGTCATTAAGCAGATTCCACGTCTTCTTGGTCCTGGTCTCAACAAGGCAGGAAAGTT 420
Query 476 CCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGAATGAAACAAAGGCAAC 535
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 CCCAACTCTTGTGAGCCACCAGGAATCCTTAGAGTCAAAGGTGAATGAAACAAAGGCAAC 480
Query 536 AGTGAAGTTCCAGCTGAAGAAGGTTCTGTGCATGGGAGTTGCAGTTGGTAACCTTTCAAT 595
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGTGAAATTCCAGCTGAAGAAGGTTCTGTGCATGGGAGTTGCAGTTGGTAACCTTTCAAT 540
Query 596 GGAAGAGAAGCAGATCTTTCAGAATGTGCAGATGAGCGTCAACTTCCTCGTCTCGCTATT 655
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 541 GGAAGAGAAGCAGATTTTTCAGAATGTTCAGATGAGTGTCAACTTCCTCGTCTCGCTATT 600
Query 656 GAAGAAGAACTGGCAAAATGTCAGGTGTTTGTACCTCAAGAGCACAATGGGACCACCACA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAAGAAGAACTGGCAAAATGTCAGGTGTTTGTACCTCAAGAGCACAATGGGACCACCACA 660
Query 716 AAGAATCTTCTGAGCTTTCACCTACTT 742
|||||||||||||||| || || ||||
Sbjct 661 AAGAATCTTCTGAGCTCTCGCCAACTT 687
> Ahg481757 jgi|Araly1|481757|fgenesh2_kg.4__817__AT2G27530.1
Length=895
Score = 754 bits (408), Expect = 0.0
Identities = 591/678 (87%), Gaps = 17/678 (3%)
Strand=Plus/Plus
Query 63 TGAG-ACAAGCTCAAAATGAGTAAGCTTCAGAGTGAGGC-CGTTCGTGAAGCCATCACTA 120
|||| | || ||||| ||||||||||||||||||||||| | || | ||||| || || |
Sbjct 97 TGAGAAGAAACTCAATATGAGTAAGCTTCAGAGTGAGGCTC-TTAGAGAAGCTATTACGA 155
Query 121 CTATCACAGGG-AAATCCGAGGCA-AAGAAACGTAACTTTGTCGAGACTA-TTGAGCTCC 177
| |||| |||| ||||| |||| | || |||||||||||||| ||||| | | || || |
Sbjct 156 CCATCA-AGGGAAAATCTGAGG-AGAAAAAACGTAACTTTGTTGAGAC-AGTGGAACTTC 212
Query 178 AGATCGGTCTGAAGAACTATGACCCTCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGT 237
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 213 AGATTGGTCTGAAGAACTATGACCCACAAAAGGATAAGCGTTTCAGTGGATCTGTGAAGC 272
Query 238 TACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTG 297
|||| ||||| || || || |||||||||||||| ||||| |||||||| || |||||||
Sbjct 273 TACCGCATATTCCTCGCCCGAAAATGAAGATCTGTATGCTTGGAGATGCTCAACATGTTG 332
Query 298 AAGAGGCTGAGAAGATGGG-GTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTTAAC 356
| ||||| ||||| ||||| || | ||||||||||||||| || | || |||||||||
Sbjct 333 AGGAGGCGGAGAAAATGGGACTTAG-CAACATGGATGTTGAGGCTTTGAAGAAGCTTAAC 391
Query 357 AAGAACAAGAAACTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGAG 416
||||||||||| || || ||||||||||| ||| ||||||||||||||||| |||||
Sbjct 392 AAGAACAAGAAGCTTGTTAAGAAGCTTGCTAAGTCTTACCATGCTTTCTTGGCTTCTGAA 451
Query 417 TCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGGAAAATTC 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 452 TCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGGAAAGTTC 511
Query 477 CCAACTCTTGTGAGCCACCAGGAATCCTTGGA-GTCAAAGGTGAATGAAAC-AAAGGCAA 534
|||||||||||||| ||||| || || ||||| | ||||||||||||| || |||| |||
Sbjct 512 CCAACTCTTGTGAGTCACCAAGAGTCATTGGAAG-CAAAGGTGAATGAGACCAAAG-CAA 569
Query 535 CAGTGAAGTTCCAGCTGAAGAAGGTTCTGTGCATGGGAGTTGCAGTTGGTAACCTTTCAA 594
|||||||||||||| ||||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct 570 CAGTGAAGTTCCAGTTGAAGAAAGTTCTGTGTATGGGTGTTGCTGTTGGTAACCTTTCAA 629
Query 595 TGGAAGAGAAGCAGATCTTTC-AGAATGTGCAGATGAGCGTCAACTTCCTCGTCTCGCTA 653
|||||||||||||| | |||| ||||||||||||||||||| |||||||||||||| ||
Sbjct 630 TGGAAGAGAAGCAGCT-TTTCCAGAATGTGCAGATGAGCGTTAACTTCCTCGTCTCTCTC 688
Query 654 TTGAAGAAGAACTGGCAAAATGTCAGGTGTTTGTACCTCAAGAGCACAATGGGACCACCA 713
||||||||||| |||||||| || |||||||||||| | |||||||| ||||||||||||
Sbjct 689 TTGAAGAAGAATTGGCAAAACGTAAGGTGTTTGTACTTGAAGAGCACCATGGGACCACCA 748
Query 714 CAAAGAATCTTCTGAGCT 731
||||||||||| ||||||
Sbjct 749 CAAAGAATCTTTTGAGCT 766
> Ahg894117 jgi|Araly1|894117|Al_scaffold_0006_2113
Length=654
Score = 575 bits (311), Expect = 2e-163
Identities = 479/559 (86%), Gaps = 16/559 (3%)
Strand=Plus/Plus
Query 162 GAGACTATTGAGCTCCAGATCGGTCTGAAGAACTATGACCCTCAAAAGGACAAGCG-TTT 220
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| | |||
Sbjct 88 GAGACTATTGAACTCCAGATTGGTCTTAAGAACTATGACCCTCAAAAGGACAAGAGATTT 147
Query 221 CAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAA-ATGAAGATCTGCATGCTCG 279
|| || || || || || || || | || | || ||| |||||||| |||||||| |
Sbjct 148 -AGCGGTTCGGTGAAATTGCCTCACGTTCCTAGGCC-AAAGATGAAGATTTGCATGCTTG 205
Query 280 GAGATGCCCAGCATGTTGAAGAGGCTGAGAAGATGGGGTTGGAAAAC-ATGGATGTTG-A 337
|||| |||||||| || ||||||||||||||||| || |||| || | |||||||||| |
Sbjct 206 GAGACGCCCAGCACGTCGAAGAGGCTGAGAAGATTGGATTGG-AATCTATGGATGTTGAA 264
Query 338 GTCTCTAAAAAAGCTT-AACAAGAACAAGAAACTCGTCAAGAAGCTTGCAAAGAAATACC 396
| |||| || ||| || ||||||||||||||||| || ||||||||||| ||||||| ||
Sbjct 265 G-CTCTTAAGAAG-TTGAACAAGAACAAGAAACTTGTTAAGAAGCTTGCTAAGAAATTCC 322
Query 397 ATGCTTT-CTTGGCCTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGT 455
||||||| ||| || || || ||||||||||||||||||||||||||||||||||| |||
Sbjct 323 ATGCTTTCCTT-GCTTCGGAATCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCCGGT 381
Query 456 CTTAACAAGGCAGGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTC-AAA 514
|| |||||||||||||| |||||||||||||| |||||||| || || ||||| || |||
Sbjct 382 CTCAACAAGGCAGGAAAGTTCCCAACTCTTGTTAGCCACCAAGAGTCTTTGGAATCGAAA 441
Query 515 GGTGAATGAAACAAAGGCAACAGTGAAGTTCCAGCTGAAGAAGGTTCTGTGCATGGGAGT 574
|||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 442 -GTGAATGAGACAAAGGCAACAGTGAAGTTCCAGCTCAAGAAGGTTCTCTGTATGGGAGT 500
Query 575 TGCAGTTGGTAACCTTTCAATGGAAGAGAAGCAGATCTTTCAGAATGTGCAGATGAGCGT 634
|| || || || ||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 501 CGCTGTCGGGAATCTTTCCATGGAAGAGAAGCAGATCTTTCAGAATGTTCAGATGAGTGT 560
Query 635 CAACTTCCTCGTCTCGCTAT-TGAAGAAGAACTGGCAAAATGTCAGGTGTTTGTACCTCA 693
||||||||||| || || | ||||||| |||||||| ||||| ||||| |||||| | |
Sbjct 561 TAACTTCCTCGTTTCACT-TCTGAAGAAAAACTGGCAGAATGTGAGGTGCTTGTACTTGA 619
Query 694 AGAGCACAATGGGACCACC 712
||||||||||||| |||||
Sbjct 620 AGAGCACAATGGGTCCACC 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35225575308
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5