BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08370.1
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470898 jgi|Araly1|470898|fgenesh2_kg.1__852__AT1G08370.1 2359 0.0
> Ahg470898 jgi|Araly1|470898|fgenesh2_kg.1__852__AT1G08370.1
Length=1451
Score = 2359 bits (1277), Expect = 0.0
Identities = 1394/1451 (96%), Gaps = 6/1451 (0%)
Strand=Plus/Plus
Query 17 AAGCAGACAACAAAATAGCGAAGTGCGTTCCAAAAGTTAGCGTTTTCGTCTCCGTCCCCA 76
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2 AAGTAGACAACAAAATAGCGAAGTGCGTTCAAAAAGTTAGCGTTTTCGTCTCCGTCCCCA 61
Query 77 AATCTCTCAGCTACCTTAAATCAGAATTCTAGGGTTCTTCCGATTAGGGTAAAATCGAAT 136
|||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 62 AATCTCACAGCTTCCGTAAATCAGAATTCTAGGGTTCTTCCGATTAGGCTAAAATCGAAT 121
Query 137 CCAGATTTCCC-AAAATTCTGATCTTTGATTTATAAAAGATGTCTCAAAACGGGAAGATA 195
| ||| ||||| |||| ||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 122 CGAGA-TTCCCTAAAAATCTGAGCTTTGATTTATAAAAGATGTCTCAGAACGGGAAGATA 180
Query 196 ATCCCAAATCTGGACCAAAACAGTACGAGGCTCCTCAATCTCACAGTTCTCCAGCGGATC 255
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCCCAAATCTGGACCAGAACAGTACGAGGCTCCTCAATCTCACAGTTCTCCAGCGGATC 240
Query 256 GATCCATACATCGAGGAAATCCTCATCACAGCCGCTCATGTCACTTTCTATGAATTCAAC 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATCCATACATCGAGGAAATCCTCATCACAGCCGCTCATGTCACTTTCTATGAATTCAAC 300
Query 316 ATTGAGCTCAGCCAATGGAGTCGTAAGGACGTTGAAGGATCTTTGTTTGTTGTCAAAAGA 375
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 301 ATTGAGCTCAGCCAATGGAGTCGTAAGGATGTTGAAGGATCTTTGTTCGTTGTCAAAAGA 360
Query 376 AGTACACAACCTCGATTTCAGTTTATTGTGATGAATCGTCGTAATACAGATAATCTGGTG 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTACACAACCTCGATTTCAGTTTATTGTGATGAATCGTCGTAATACAGATAATCTGGTG 420
Query 436 GAGAATCTCCTGGGAGATTTTGAGTATGAAGTACAAGGTCCATATTTACTTTACCGTAAT 495
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 421 GAGAATCTCCTGGGAGATTTTGAGTATGAAGTCCAAGGTCCTTATTTACTTTACCGTAAT 480
Query 496 GCATCTCAAGAAGTAAATGGCATTTGGTTCTACAATAAACGTGAATGCGAGGAGGTAGCA 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCATCTCAAGAAGTAAATGGCATTTGGTTCTACAATAAACGTGAATGCGAGGAGGTAGCA 540
Query 556 ACTCTTTTCAACAGAATACTCAGTGCATATTCCAAGGTTAACCAGAAGCCAAAGGCCTCA 615
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACTCTTTTCAACAGGATACTTAGTGCATATTCCAAGGTTAACCAGAAGCCAAAGGCCTCA 600
Query 616 TCTTCAAAGAGTGAGTTTGAGGAATTGGAAGCTAAGCCTACAATGGCAGTTATGGATGGT 675
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTTCAAAAAGTGAGTTTGAGGAATTGGAAGCTAAGCCTACAATGGCAGTTATGGATGGT 660
Query 676 CCTCTTGAACCATCATCAACTGCTAGGGATGCCCCTGATGATCCTGCTTTTGTCAACTTC 735
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 661 CCTCTTGAACCATCATCAACTGCTAGGGATGCCCCTGATGATCCTGCTTTCGTCAACTTC 720
Query 736 TTTAGCTCAACGATGAATCTTGGGAACACTGCGAGTGGGTCAGCAAGTGGACC---TTAC 792
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 721 TTTAGCTCAACGATGACTCTTGGGAACACTGCGAGTGGGTCAGCAAGTGGACCACCTTAC 780
Query 793 CAATCATCAGCGATTCCTCACCAACCTCACCAGCCTCACCAACCCACCATTGCTCCTCCT 852
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 781 CAATCATCAGCGATTCCTCACCAACCTCACCAACCTCACCAATCCACCATTGCTCCTCCT 840
Query 853 GTAGCGGCAGCAGCACCTCCACAGATACAATCACCACCGCCTCTACAATCCTCCTCTCCT 912
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 841 GTAGCGGCAACAGCACCTCCACAGATACAATCACCACCGCCTCTACCATCCTCCTCTCCT 900
Query 913 CTGATGACTCTCTTTGACAACAACCCTGAAGTTATCAGCAGCAACTCCAACATTCACACA 972
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct 901 CTGATGACTCTCTTTGACAACAACCCTGATCTTATCAGCAGCAACTCCAATGTTCACGCC 960
Query 973 GATTTGGTGACGCCGTCTTTCTTTGGCCCCCCACGAATGATGGCACAGCCACACCTCATT 1032
|||||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 961 GATTTGGTGAAGCCGTCTTTCTTTGGGCCCCCGCGAATGATGGCACAACCACACCTCATT 1020
Query 1033 CCTGGTGTATCTATGCCCACTGCTCCTCCTCTCAATCCTAATAATGCGAGTCACCAGCAG 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CCTGGTGTATCTATGCCCACTGCTCCTCCTCTCAATCCTAATAATGCGAGTCACCAGCAG 1080
Query 1093 CGGTCATATGGTACTCCGGTGCTCCAGCCTTTCCCACCCCCAACTCCACCACCATCACTC 1152
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CGGCCATATGGTACTCCGGTGCTCCAGCCTTTCCCACCCCCAACTCCACCACCATCACTC 1140
Query 1153 GCTCCTGCACCCACTGGTCCGGTTATCAGCAGAGACAAAGTGAAGGAAGCCCTTTTATCC 1212
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1141 GCTCCTGCACCCACTGGTCCGGTTATCAGCAGAGACAAAGTGAAAGAAGCCCTTTTATCC 1200
Query 1213 CTGTTGCAGGAGGATGAATTCATTGACAAGATTACCCGAACTTTACAAAATGCACTTCAA 1272
||||| ||| | ||||||||||| |||| ||| |||||| ||||||||||||||| ||||
Sbjct 1201 CTGTTTCAGCACGATGAATTCATCGACATGATGACCCGAGCTTTACAAAATGCACATCAA 1260
Query 1273 CAATGAAGCTGCGCTGG-TCAGCATCTACGTGTGGGATAGTGGCTGTTTGATCTAGAATG 1331
| |||||||||| |||| ||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1261 CCATGAAGCTGCACTGGGTCAGCATCTACGTGTGGGACAGTGGCTGTTTGATTTAGAATG 1320
Query 1332 TGTAGTTAAAATGTAGTTTTGTTCCCTCTGAAAGTGTTGTTGGAACCTTATAAGATACTG 1391
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1321 TGTAGTTAAAATGTAGTTTTGTTTCCTCTGAAAGTGTTGTTGGAACCTTATAAGATACTG 1380
Query 1392 CACTGCCCCCTTTGTTTAACTCTTGGAATTACTTTTTCATTTTATCTACTTTCAAGTTTT 1451
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1381 CACTGCTCCCTTTGTTTAACTCATGGAATTACTTTTTCATTTTATCTACTTTCAAGTTTT 1440
Query 1452 TACCTTTCCTC 1462
|||||||||||
Sbjct 1441 TACCTTTCCTC 1451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54811862555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5