BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08390.1
Length=602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470900 jgi|Araly1|470900|fgenesh2_kg.1__854__AT1G08390.1 682 0.0
> Ahg470900 jgi|Araly1|470900|fgenesh2_kg.1__854__AT1G08390.1
Length=593
Score = 682 bits (369), Expect = 0.0
Identities = 542/618 (88%), Gaps = 42/618 (7%)
Strand=Plus/Plus
Query 1 GGTAAAATGGACTACAGCTTAGCGGCGGTGAAGATGCTTTGTTCTCAGCTCCGGGACGCT 60
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1 GGTAAAATGGACTACAGCTTAGCGGCGGTGAAAATGCTTTGTTCCCAGCTCCGGGACGCT 60
Query 61 AAACCGACGCCTTCTCAGAACGCCGCCTCCCTAGGCGGTGTACTTTTTCAACGTGCTTGG 120
||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 61 AAACCAACGCCTTCTCAGAACGCCACCGCCCTAGGCGGTGTACTTTTTCAACGTGCTTGG 120
Query 121 TTACAGGGCGTTTTGGTCCCCTTCTCCGGTGGAGGCGGCGATAATTGTCTGGTACTTGAT 180
|||||||| |||||||||||| ||||| || ||||| ||||| | |||| ||||||
Sbjct 121 TTACAGGGAGTTTTGGTCCCCATCTCC---GGCGGCGGTGATAACCATATGGTCCTTGAT 177
Query 181 GACGGAACCGGTCTTTTGGAGCTCGGTCTCACCAACGATTTTGCCCTCCGTCAATGGAAA 240
|||||||| |||||| |||||||||| ||| | | |||||||||||||||||||||||||
Sbjct 178 GACGGAACAGGTCTTGTGGAGCTCGGGCTCTCGAGCGATTTTGCCCTCCGTCAATGGAAA 237
Query 241 TCAGGAATGTACGTGATGGTTGTTGGTGTCTACCA-AGTCCGTACTGGGCAGATACCTCT 299
||||||||||| ||||||||||||||||| ||||| | ||||||| ||| ||||||||||
Sbjct 238 TCAGGAATGTATGTGATGGTTGTTGGTGTATACCATA-TCCGTACCGGGGAGATACCTCT 296
Query 300 ACTTAAGGTTCATAAGATGGTTGACCTGTCGGTGAGCCCAGATCGTGAAGCCATGTGGTA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACTTAAGGTTCATAAGATGGTTGACCTGTCGGTGAGCCCAGATCGTGAAGCCATGTGGTA 356
Query 360 TTTAGAAGTCATGGACGCATACAGACTCTTCTATGAGCCCTTGATCCAAGAGTTCTCTTG 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTTAGAAGTCATGGACGCGTACAGACTCTTCTATGAGCCCTTGATCCAAGAGTTCTCTTG 416
Query 420 ATTCTTCACTTCACTTA-A--C---TT-ATCTATTCTTCTTTTAGTTTCACCAGACCAGA 472
||||||||||| |||| | | || ||||||||||||||||||||||||||||||||
Sbjct 417 ATTCTTCACTTAACTTTTATTCCAATTTATCTATTCTTCTTTTAGTTTCACCAGACCAGA 476
Query 473 TTAATCCtttttttGTTTATTGAAGATGATCTTTAGAGTCATGGGTATGTACTTCTACGG 532
||||||| ||| | | | |||||||||||| ||||||| |||||
Sbjct 477 TTAATCC-----------ATT-----T--T-T--AGAGTCATGGGTTTGTACTTTTACGG 515
Query 533 AATCAAAAGCAAGGTTGTATCATTT-T---T----AACACACCATT-GCTAGTTTTCAAT 583
|||||||||||||||| |||||||| | | |||||||| || ||||||| |||||
Sbjct 516 AATCAAAAGCAAGGTTTTATCATTTCTAAGTTCCTAACACACCGTTTGCTAGTTATCAAT 575
Query 584 TTATCCAATTTCTGCTGC 601
|||||||| |||| ||||
Sbjct 576 TTATCCAAATTCTACTGC 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22053930442
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5