BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08400.1
Length=2463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470901 jgi|Araly1|470901|fgenesh2_kg.1__855__AT1G08400.1 3869 0.0
> Ahg470901 jgi|Araly1|470901|fgenesh2_kg.1__855__AT1G08400.1
Length=2445
Score = 3869 bits (2095), Expect = 0.0
Identities = 2333/2449 (95%), Gaps = 11/2449 (0%)
Strand=Plus/Plus
Query 20 TTTCCCGGCAAATGCTTCCGATGGAACATCCACTTCCACTGTCGTTCGTCTTGCCAAACC 79
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 TTTCCCGGCAAATGCTTCCGATGGAACATCCACTTCCACTGTCGTTCGTCTTGCCAAATC 60
Query 80 CGGCC-ACCCTTCCCGGTCTCGCACTAGGCTTTATTGACGGTAATTTCGTAGACCTCCAA 138
||||| | ||| |||||||| || |||||||| ||||||||||||||| |||||||| |
Sbjct 61 CGGCCGA-CCTCCCCGGTCTTTCAGTAGGCTTTCTTGACGGTAATTTCGAAGACCTCCGA 119
Query 139 GATCTGCTCCTCCGCGCTTCGACTCTGACGTCCAATTTAAACCACGACTGTTCTGATCTA 198
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 GATCTGCTCCTCCGCGCTTCGACTCTAACGTCCAATTTAAACCACGACTGTTCTGATCTA 179
Query 199 AACGACCGTCTTCTCCATCTCCGGACGGATCTCACGAAGCACGCCGTTTCCTGGATCTCA 258
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 180 AACGACCGTCTTCTCCATCTCCGGACGGATCTCACCAAACACGCCGTTTCCTGGATCTCA 239
Query 259 ACCTCACTTTCCGCTAAAGTTTCAC-TCGAAGATTTGAGATTGAACCTGGAGAGCCTCCT 317
|||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 240 ACCTCACTTTCCACTAAAGTTTC-CTTCGAAGATTTGAGATTGAACCTGGAGAGCCTCCT 298
Query 318 CTGTCTCCCTACGGATTCTGTCGGAAAGCAAACGAATTGGGAGTTACAGCAAGTCGTAGA 377
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 299 CTGTCTCCCTACGGATTCTGTCGGAAAGCAAACGAATTGGGAGTTACATCAACTTGTAGA 358
Query 378 GGAATTGTGTCGTATACAGAATCGGCGTAAATATTTCGTGACTGCCTTAAAGTTGGAAAG 437
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 359 GGAATTGTGTCGTATACAGAATCGGCGCAAATATTTCGTGACTGCCTTAAAGTTGGAGAG 418
Query 438 TCTTGTTGGCGATCTTGAAGATTCTGTG-TT--TCATCCGATAAGTAAACGCAAAGGAAG 494
||||||||| |||||||||||||| ||| || |||||| ||||||||||||||||||||
Sbjct 419 TCTTGTTGGAGATCTTGAAGATTCAGTGTTTCATCATCCTATAAGTAAACGCAAAGGAAG 478
Query 495 TACGCTTCAAGATCTTGCATTGAAGCAAGAGAGATTCAGTCATGCTATTAAGACCATGAA 554
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 479 TACGCTTCAAGATCTTGCATTGAAGCAGGAGAGGTTCAGTCATGCCATTAAGACCATGAA 538
Query 555 TGAGATTGAAGAAATACTTGGTGATGTTACAAGGCATCACTCACGGTGGCGTCGCCTTGT 614
| |||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 539 TCAGATTGAAGAAATACTTGGTGATGTTACAAGGCATCACTCGCAGTGGCACCGCCTTGT 598
Query 615 AGATTCTGTTGATAGTAGAGTAGATAAAAGTCTGTCTGTTCTTCGTCCACAGATTATCGC 674
|||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 599 AGATTCTGCTGATAGTAGAGTAGATAAAGGTTTGTCTGTTCTTCGTCCACAGATTATCGC 658
Query 675 AGATCACCGAGCTTTTCTCTCATCTCTTGGCTGGCCACCAAAACTTGCAACATCCAAAGT 734
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 AGAGCACCGAGCTTTTCTCTCATCTCTTGGCTGGCCACCAAAACTTGCAACCTCCAAAGT 718
Query 735 CGAGCATGGAGAGGTTGATAGTATCCCTAATCCTCTACTCTTGATGCAAGGAGATAAAAA 794
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CGAGCATGGAGATGTTGATAGTATCCCTAATCCTCTACTCTTGATGCAAGGAGATAAAAA 778
Query 795 AGAGTCTTATTCCCAAAGCTTTCTACTCCTCTGTGGTTTACAGCAACATAATACGCAGAA 854
||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||
Sbjct 779 GGAGTCTTATTCCCAAAGCTTTTTACTCCTCTGTGGTTTACAGCAACTTAATACCCAGAA 838
Query 855 GGAAAAACGAAAGAAGCTTAATATGACCAAAGAAACTGATAATGATGGACTTTGGGCGAC 914
||||||||| ||||||||| ||||| ||||||||| ||||||||||||||||||||| ||
Sbjct 839 GGAAAAACGGAAGAAGCTTCATATGCCCAAAGAAAATGATAATGATGGACTTTGGGCTAC 898
Query 915 CGATGAACTAGTTAAACCGGTTGCATCTCGGATGGAGTATCATTTTCTAAAATGGGCTGA 974
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 899 CGATGAACTAGTTAAACCGGTTGCATCTCGGATGGAGTATCATTTTATGAAATGGGCTGA 958
Query 975 GCAACCTGAGTTTATTTTTGAACTTGTCTATAAAGTTACAAGAGACTTTGCTGATGGGGT 1034
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 959 CCAACCTGAGTTTATTTTTGAACTTGTCTACAAAGTTACAAGAGACTTCGCTGATGGGGT 1018
Query 1035 TGACGATTTCTTACAGCCTTTGATTGATAGGGCTATGTTAGTAAGCTGTAGTGCTAAAGA 1094
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1019 GGACGATTTCTTACAGCCTTTGATTGACAGGGCTATGTTAGTAAGCTGTAGTGCTAAAGA 1078
Query 1095 AGCTTGGGTTTCAGCGATGGTCCAAATGCTATCTGGTTTCTTAGAGAAAAAAGTTTTTCC 1154
|||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 1079 AGCTTGGGTTTCAGCGATGGTCCAGATGCTATCTGGTTTCTTGGAGAAAAAGGTTTTTCC 1138
Query 1155 TGGGCTTATAGATATGTACAAGGAGAAGCACATGAAATCTGAAGGTATTTCATCGTGGTT 1214
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1139 TGGGCTTATAGATATGTACAAGGAGAAGCAAATGAAATCTGAAGTTATTTCATCGTGGTT 1198
Query 1215 CCATCTTGTCGATCAGATGGTTACATTTGATAAGCGAATGCAGTCTTTTGTGAATACAGA 1274
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct 1199 CCATCTTGTTGATCAGATGGTTACATTTGATAAACGAATGCAGTCATTTGTGAATTCAGA 1258
Query 1275 TACTTGTCTATCTTATGAAGGCTCTTCGACAGCGTTTTCTCAAGGTATATCAGTAATGGG 1334
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TACTTGTCTTTCTTATGAAGGCTCTTCGACAGCGTTTTCTCAAGGTATATCAGTAATGGG 1318
Query 1335 ACTGTTTTGTAAGAAACCTGAGTGGCTCAAAACCTGGGGGAAGATTGAGCTAAAGGATGC 1394
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1319 ACTATTTTGTAAGAAACCTGAGTGGCTCAAGACCTGGGGGAAGATTGAGCTAAAGGATGC 1378
Query 1395 TTATAGAAAAAGTAAAGAGGATATTAAGAATGAGAAAGCTTGGGTAATTGATAGTGAAAG 1454
||||||||||| |||||||||| | |||||||| |||||||||||| |||||||||||||
Sbjct 1379 TTATAGAAAAACTAAAGAGGATGTCAAGAATGATAAAGCTTGGGTAGTTGATAGTGAAAG 1438
Query 1455 AACTAGACTTGGTAATGAATCCAACTCACAGTCTGCAAAGTATGTTCTATCTACAAGAGA 1514
||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1439 AACTACACTTGGTAATGAATCCAACACACGGTCTGCAAAGTATGTTCTATCTACAAGAGA 1498
Query 1515 AGATTATAAAGCGCCATTAGTAGCAGACTCTTTTCTTAATAGGACTTGGAGGTTGATAGA 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 AGATTATAAAGCGCCATTAGTAGCAGACTCTTTTCTTAATAGGACTTGGAGGTTGATAGA 1558
Query 1575 CCATGGTCTATCTCTACCGGCCATTCTACCAAGGATCCAATTTATAAGAGCTACTGCCAC 1634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 CCATGGTCTATCTCTACCGGCCATTCTACCAAGGATCCAATTTATAAGAGCTACTGCCAC 1618
Query 1635 CAGATTTCTCTGGTGTATATTCAAAATTCTGTTATTGGAGTTCAAAAAGACTGATCTCTC 1694
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1619 CAGATTTCTCTGGTGTATATTCAAAATTCTGTTACCGGAGTTCAAAAAGACTGATCTCTC 1678
Query 1695 TCATTATGGTTTGTCTGAAGATACACTGATACAAGCATGTGGACCGGTTAATGCTGCTCG 1754
||| ||| ||||| ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1679 TCACTATATTTTGTTTGAAGATACACTGATACAAGCCTGTGGACCAATTAATGCTGCTCG 1738
Query 1755 GTATCTTGAATCAAAACTACGAGAATGGAGTGATGATTTGGTTTTTGTAGAGATGTGGGC 1814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 GTATCTTGAATCAAAACTACGAGAATGGAGTGATGATTTGGTTTTTGTAGAGATGTGGGC 1798
Query 1815 TGCCGAAACCAGTGTCAAAGTTGATAGAAAACCTGAAGTTTCCTGCCAAGGCTGCTTTTT 1874
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1799 TGCCGAAACCAGTGTCAATGTTGATAGAAAGCCTGAAGTTTCCTGCCAAGGCTGCTTTTT 1858
Query 1875 TGGGGAAGAACTGAAAAGCCTTGTTGAGTTGGAAACCAATTGGCTTATGGAGATTATAAC 1934
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1859 TGGGGAAGAACTGAAAAGCCTTGTTGAGTTGGAAACCAATTGGCTTATGGAGATCATAAC 1918
Query 1935 AGTTTTTCTCCACCAATTTGACAATCTTTGCAGCGACCACTTCCACAACAATGCAGTTTC 1994
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 AGTTTTTCTCCACCAATTCGACAATCTTTGCAGCGACCACTTCCACAACAATGCAGTTTC 1978
Query 1995 ATGGGACGAAGACGTCATTACCAGCTCCAGCAATTTAACAGTGTCTCAGGGTGTCGCAGA 2054
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1979 ATGGGAGGAAGACGTCATTACCAATTCCAGCAATTTAACAGTGTCTCAGGGTGTCGCAGA 2038
Query 2055 AGCATTGGACAATTTAAGAAGGCATCTGTGTGTTCTTCATCTAAACATGAACCCGAAAGA 2114
||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 2039 AGCATTGGACAATTTGAGAAGGCATCTATGTGTTCTTCATGTAAACATGAACCCGAAAGA 2098
Query 2115 CTTCTTGGACTTGTGGAGAAATCTCGCGGAAGGGCTTGACCATTATGTTTCTCGTAAATT 2174
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 CTTCTTGGACTTGTGGAGGAATCTCGCGGAAGGGCTTGACCATTATGTTTCTCGTAAATT 2158
Query 2175 TTTCTCAGGAGAACCTGTTTTACGGAGACAAAAGTTTGATAGGTTTGAAGTTGACGCAGA 2234
|||||||||||| ||||||||| ||||| |||||||||| || ||||| || ||||||||
Sbjct 2159 TTTCTCAGGAGATCCTGTTTTAGGGAGAAAAAAGTTTGAAAGATTTGAGGTCGACGCAGA 2218
Query 2235 GGCACTTCTTACTGTGCTTAAACCTTATTGTGTTCGTCCTGGTGCATTTTTCCCTCGTGT 2294
|||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 2219 GGCACTTCTTACAGTGCTTCAACCTTATTGTGTTCGTCCTGGTGCATTTTTGCCTCGTGT 2278
Query 2295 GCGAGAGATTCTTAGGCTGTTGAGGATGCATGAGGAAGAAAAGGCACGATTGAGAGGAGC 2354
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2279 GCGAGAGATTCTTAGGCTGTTGAGGATGCATGAGGAAGAAAAGGCACGGTTGAGAGGAGC 2338
Query 2355 TCTAAGTCGAAGTGGAAAT-ACTTGTCTAAAGTTGTTTGGTATTTCTAACTTGTCTCCTC 2413
||||||||||| ||||||| | |||||||| ||||||||| ||||||||||||||| |||
Sbjct 2339 TCTAAGTCGAAATGGAAATTA-TTGTCTAAGGTTGTTTGGCATTTCTAACTTGTCTGCTC 2397
Query 2414 AACTTGTGGAACAATTTTGTAGGT-CTTACTAGTAATGAATGCCTTTTT 2461
|||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 2398 AACTTGTGGAACAATTTTGTAGGTGCT-ACTAGTAATGAATGCCTTTTT 2445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92825927065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5