BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08410.1
Length=2161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919585 jgi|Araly1|919585|scaffold_100866.1 2785 0.0
Ahg481615 jgi|Araly1|481615|fgenesh2_kg.4__675__AT2G27200.1 1295 0.0
> Ahg919585 jgi|Araly1|919585|scaffold_100866.1
Length=1794
Score = 2785 bits (1508), Expect = 0.0
Identities = 1710/1805 (95%), Gaps = 23/1805 (1%)
Strand=Plus/Plus
Query 107 GAGAA-CAGAGAGATGGGGAAGAGCGAAAAGACGTCGTTGGGGCGATCACTCGTGAAGCA 165
||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 10 GAGAACCAGAGAGATGGGGAAGAGCGAAAAGACGTCGTTAGGGCGATCACTGGTGAAGCA 69
Query 166 CCACAACCATATGATACAAGAATCCAAAGACAAAGGCAAGTACTACAAGAATCTACAGAA 225
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 70 CCACAACCATATGATTCAAGAATCCAAAGACAAAGGCAAGTACTACAAGAATCTTCAGAA 129
Query 226 GAAAGTTCTCGAATCTGTGACTGAGGTCAGTGACATCGACGCCATCATTGAGCAAGCTGA 285
||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 130 GAAAGTTCTCGAATCCGTGACCGAGGTCAGCGACATCGACGCCATCATTGAGCAAGCCGA 189
Query 286 GGAGGCAGAGCGTCTTTACACCATTAATCACAGCTCCTCCACACCTTTGTCTATCAATCT 345
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 190 GGAGGCTGAGCGTCTTTACACCATTAATCACAGCTCCTCCACACCTTTGTCCATCAATCT 249
Query 346 AGACACAAATTCTAGCTCAAGTGTTATAGCAGCTGAAGAATGGAGAGAGCAACAGAAGAT 405
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 250 AGACACAAATTCCAGCTCAAGTGTTATAGCAGCTGAAGAGTGGAGAGAGCAACAGAAGAT 309
Query 406 AGAGGAGGCTTTACACGCCAGTAGTCTTCAAGTACCTCGAAGACCTCCGTGGACACCTGA 465
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 310 AGAGGAGGCTTTACACGCCAGTAGTCTTCAAGTGCCTCGAAGACCTCCGTGGACACCCGA 369
Query 466 AATGTCAGTGGAAGAACTTGATGCTAATGAAAAACAAGCTTTTCTAAATTGGCGCCGGAT 525
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 370 AATGTCAGTAGAAGAACTAGATGCTAATGAAAAACAAGCTTTTCTAAATTGGCGCCGGAT 429
Query 526 GCTTGTGAGCCTTGAGGAAAATGAAAAGCTAGTGTTGACTCCATTCGAAAAGAACCTTGA 585
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 430 GCTTGTGAGCCTTGAGGAAAATGAAAAGCTTGTGTTGACTCCATTCGAAAAGAACCTTGA 489
Query 586 CATCTGGAGACAGCTTTGGAGAGTGCTTGAACGCAGTGATTTGATTGTTATGGTAGTTGA 645
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 490 CATCTGGAGACAGCTTTGGCGAGTGCTTGAACGCAGTGATTTGATTGTTATGGTTGTTGA 549
Query 646 TGCTAGAGATCCACTGTTTTACCGCTGCCCTGATCTTGAGGCATATGCTCAAGAAATTGA 705
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 550 TGCTAGAGATCCACTGTTTTACCGCTGCCCTGATCTTGAGGCATATGCTCGAGAAATTGA 609
Query 706 TGAGCATaaaaaaaTAATGCTTCTAGTGAACAAGGCGGATCTTTTACCTACTGATGTCAG 765
||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 610 TGAACATAAGAAAATAATGCTTCTAGTTAACAAGGCGGATCTTTTACCTACTGATGTCAG 669
Query 766 GGAGAAATGGGCAGAATATTTCCGCCTTAACAACATTCTGTTTGTTTTCTGGTCAGCCAT 825
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GGAGAAATGGGCAGAGTATTTCCGCCTTAACAACATTCTGTTTGTTTTCTGGTCAGCCAT 729
Query 826 AGCTGCTACAGCTACCCTAGAAGGTAAAGTCTTGAAAGAGCAATGGAGACAACCCGATAA 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 AGCTGCTACAGCTACCCTAGAAGGTAAAGTCTTGAAAGAGCAATGGAGACAACCCGATAA 789
Query 886 CTTGCAGAAGACAGATGATCCAGACATTATGATATATGGCAGAGACGAGCTGTTGAGTCG 945
||| |||||||||||||||||||||||||||||||||||| | ||||||||| |||||||
Sbjct 790 CTTTCAGAAGACAGATGATCCAGACATTATGATATATGGCCGGGACGAGCTGCTGAGTCG 849
Query 946 TTT-GCAATTTGAGGCTCAAGAGATTGTCAAAGTAAGGAATTCTAGAGCAGCATCCGTAT 1004
||| | |||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 850 TTTAG-AATTTGAGGCTCTAGAGATTGTCAAAGTAAGGAATTCTAGAGCAGCATC-G-A- 905
Query 1005 CATCACAGTCATGGACTGGTGAATATCAACGTGATCAAGCCGTGGTTGGATTTGTTGGGT 1064
| | || || | | |||||||||||||||||||||||||||||||||||||
Sbjct 906 C-T----GT--TG-A------A-TATCAACGTGATCAAGCCGTGGTTGGATTTGTTGGGT 950
Query 1065 ACCCAAATGTTGGAAAGAGTTCTACAATCAATGCATTGGTGGGTCAGAAGCGAACAGGTG 1124
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 951 ACCCAAATGTTGGAAAGAGTTCAACAATCAACGCATTGGTGGGTCAGAAGCGAACAGGTG 1010
Query 1125 TCACCTCTACCCCAGGAAAAACAAAGCATTTCCAGACTTTGATCATCTCTGATGAGCTTA 1184
|||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 1011 TCACCTCTACCCCAGGAAAAACAAAGCATTTCCAGACTCTGATAATCTCTGAGGAGCTTA 1070
Query 1185 TGCTATGCGATTGCCCTGGTTTAGTCTTCCCTTCGTTCTCAAGCTCAAGATATGAAATGA 1244
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1071 TGCTATGCGATTGCCCTGGTTTAGTCTTCCCTTCGTTCTCAAGCTCGAGATATGAAATGA 1130
Query 1245 TTGCTTCTGGTGTACTTCCGATTGACCGGATGACGGAGCACCGTGAAGCTATTCAGGTGG 1304
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1131 TTGCTTCTGGTGTCCTTCCGATTGACAGGATGACGGAGCACCGTGAAGCTATTCAGGTGG 1190
Query 1305 TGGCTGACAAGGTCCCTCGCCGTGTAATTGAGAGTGTGTACAACATTTCTCTTCCTAAAC 1364
||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1191 TGGCTGACAAGGTTCCTCGACGTGTCATTGAGAGTGTATACAACATTTCTCTTCCTAAAC 1250
Query 1365 CCAAAACCTATGAGCGTCAGTCCCGCCCGCCTCATGCTGCAGAGCTCTTAAAAAGTTACT 1424
||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct 1251 CCAAAACCTATGAGCGTCAGTCCCGCCCGCCTCATGCTGCAGAACTTTTAAGAAGTTACT 1310
Query 1425 GTGCTTCTCGTGGCTATGTTGCCTCGAGTGGACTACCGGATGAAACGAAAGCTGCAAGGC 1484
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1311 GTGCTTCTCGTGGCTATGTTGCCTCTAGTGGACTACCTGATGAAACGAAAGCTGCTAGGC 1370
Query 1485 TGATTCTGAAAGATTACATTGGAGGTAAGCTGCCACATTATGCAATGCCACCTGGAATGC 1544
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1371 TGATTCTGAAAGATTACATTGGAGGTAAGCTGCCGCATTATGCAATGCCACCTGGAATGA 1430
Query 1545 CCCAAGCTGATGAACCGGACATAGAAGACACTCAAGAACTGGAGGATATTCTCGAAGGTT 1604
| |||| ||||||| |||| ||||| |||||| ||||||| |||||||||||||||||||
Sbjct 1431 CACAAGGTGATGAAGCGGATATAGAGGACACTGAAGAACTTGAGGATATTCTCGAAGGTT 1490
Query 1605 CAGAGTCCGATGACTCTGCAGTAGGAGATGAGACAGAAAACGAGCAAGTTCCTGGTATTG 1664
||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1491 CAGAGTCTGAAGACTCAACAGTAGGAGATGAGACAGAAAGCGAGCAAGTTCCTGGTATTG 1550
Query 1665 ATGATGTGCTAGATGATCTGAGCTCGTTTGATCTTGCCAATGGGCTTAAGTCTTCAAAGA 1724
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 ATGCTGTGCTAGATGATCTGAGCTCGTTTGATCTTGCCAATGGGCTTAAGTCTTCAAAGA 1610
Query 1725 AAGTGACAGCAAAGAAGCAAACCGCGTCACATAAACAGCACAAAAAGCCACAGAGGAAAA 1784
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 AAGTGACAGCGAAGAAGCAAACCGCGTCACATAAACAGCACAAAAAGCCACAGAGGAAAA 1670
Query 1785 AGGATCGGACTTGGAGGGTTCAAAACACAGAAGATGGAGATGGAATGCCTTCTG-TTAAA 1843
||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 1671 AGGATCGGACTTGGAGGGTTCAAAACACAGAAGATGGAGATGGGATGCCTA-TGGTTAAA 1729
Query 1844 GTTTTCCAGAAACCAGCTAACACAGGTCCTCTTACGATGCGGTGATTATCAAATTGTAGT 1903
|||||||||||||| |||||||| || ||||| |||||||| |||||| |||||||||||
Sbjct 1730 GTTTTCCAGAAACCGGCTAACACGGGGCCTCTCACGATGCGTTGATTAGCAAATTGTAGT 1789
Query 1904 CCATC 1908
||||
Sbjct 1790 TCATC 1794
> Ahg481615 jgi|Araly1|481615|fgenesh2_kg.4__675__AT2G27200.1
Length=1808
Score = 1295 bits (701), Expect = 0.0
Identities = 1201/1437 (84%), Gaps = 56/1437 (4%)
Strand=Plus/Plus
Query 119 ATGGGGAAGAGCGA-AAAGACGTCGT-TGGGGCGATCACTCGTGAAGCACCACAACCATA 176
|||||||||| ||| ||| || || | | || ||| | | ||||||||||| |||||||
Sbjct 22 ATGGGGAAGAACGAGAAA-ACATC-TCTAGGTCGAGCTTTAGTGAAGCACCATAACCATA 79
Query 177 TGATACAAGAATCCAAAGACAAAGGCAAGTACTAC-AAGAATCTACAGAAGAAAGTTCTC 235
|||| |||||| |||| || |||||||| | |||| ||| ||| ||| ||||| |||||
Sbjct 80 TGATCCAAGAAACCAAGGAAAAAGGCAAATCCTACAAAG-ATCAACACAAGAAGGTTCTA 138
Query 236 GAATCTGTGACTGAGGTCAGTGACATCGACGCCATCATTGAGCAAGCTGAGGAGGCAGAG 295
|||||||| || || ||||| |||||||| |||||||| || ||||| ||||| || ||
Sbjct 139 GAATCTGTAACCGAAGTCAGCGACATCGATGCCATCATCGAACAAGCCGAGGAAGCTGAA 198
Query 296 CGTCTTTACACCATTAATCACAG-CTCCTCCACACCT-TTGTCTATCAATCTAGACACAA 353
|| |||| | | ||| ||||| | ||| | || ||| || |||||||| | ||||||
Sbjct 199 CGGCTTTTCGCGATTCATCAC-GATTCCGCAACGCCTGTT-CCTATCAATATGGACACAG 256
Query 354 ATTCTAGCTCAAGTGTTATAGCAGCTGAAGAATGGAGAGAGCAACA-GAAGATAGAGGAG 412
||| || ||||||| |||| ||||| ||||||||| ||| ||| | || || ||| |||
Sbjct 257 GTTCGAGTTCAAGTGGTATAACAGCTAAAGAATGGAAAGACCAA-AGGATGAGAGAAGAG 315
Query 413 GCTTTACACGCCAGTAGTCTTCAAGTACCTCGAAGACCTCCGTGGACACCTGAAATGTCA 472
|||||||| || |||||||||||||| ||||||||||||| ||||||||| ||||| |
Sbjct 316 GCTTTACATGCTAGTAGTCTTCAAGTTCCTCGAAGACCTCATTGGACACCTAAAATG-AA 374
Query 473 -GTGGAAGAACTTGATGCTAATGAAAAACAAGCTTTTCTAAATTGGCGCCGGATGCTTGT 531
|||||| |||||||||||||||||| |||||||||||| | |||||| |||| ||||
Sbjct 375 TGTGGAACAACTTGATGCTAATGAAAGACAAGCTTTTCTTACTTGGCGACGGAAACTTGC 434
Query 532 GAGCCTTGAGGAAAATGAAAAGCTAGTGTTGACTCCATTCGAAAAGAACCTTGACATCTG 591
|||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 435 GAGCCTCGAGGAAAATGAAAAGCTTGTGTTGACACCATTCGAGAAGAACCTTGACATCTG 494
Query 592 GAGACAGCTTTGGAGAGTGCTTGAACGCAGTGATTTGATTGTTATGGTAGTTGATGCTAG 651
|||||| |||||| ||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 495 GAGACAACTTTGGCGAGTGCTTGAACGAAGTGATTTGATTGTTATGGTTGTTGATGCTAG 554
Query 652 AGATCCACTGTTTTACCGCTGCCCTGATCTTGAGGCATATGCTCAAGAAATTGATGAGCA 711
|||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 555 AGATCCTCTGTTTTACCGTTGTCCTGATCTTGAGGCATATGCACAAGAAATTGATGAGCA 614
Query 712 TaaaaaaaTAATGCTTCTAGTGAACAAGGCGGATCTT-TTACCTACTGATGTCAGGGAGA 770
|||||||| ||||||||| || |||||||||||| || |||||| || ||||||||||||
Sbjct 615 TAAAAAAACAATGCTTCTGGTCAACAAGGCGGAT-TTGTTACCTTCTTATGTCAGGGAGA 673
Query 771 AATGGGCAGAATATTTC-CGCCTTAACAACATTCTGTTTGTTTTCTGGTCAGCCATAGCT 829
||||||| ||||| ||| | || ||||| |||||||| || ||||||||||||| ||||
Sbjct 674 AATGGGCGGAATACTTCTC-CCGCAACAATATTCTGTTCGTCTTCTGGTCAGCCAAAGCT 732
Query 830 GCTACAGCTACCCTAGAAGGTAAAGTCTTGAAAGAGCAATGGAGA-CAACCCGATAACT- 887
||||| |||||||||||||||||| | ||||||| || |||||| | ||| |||| ||
Sbjct 733 GCTACGGCTACCCTAGAAGGTAAACCCCTGAAAGAACAGTGGAGAGC-ACCTGATACCTC 791
Query 888 TGCAGAAGACAGATGATCCAGACATTATG--A-TATATGGCAGAGACGAGCTGTTGAG-T 943
| |||||||||||| | |||| | | || | ||||||| || || ||||| ||| | |
Sbjct 792 T-CAGAAGACAGATAACCCAG-C--TGTGAAAGTATATGGAAGGGATGAGCTTTTG-GCT 846
Query 944 CGTTTGCAATTTGAGGCTCAAGAGATTGTCAAAGTAAGGAATTCTAGAGCAGCATCCGTA 1003
|| || || ||||||||| |||||| || ||| | ||||| ||||||| | | ||
Sbjct 847 CGATTAAAACTTGAGGCTCTAGAGATAGTAAAAATGAGGAAATCTAGAG--G-A---GTT 900
Query 1004 TCATCACAGTCATGGACTGGTGAAT-ATCAACGTGATCAAGCCGTGGTTGGATTTGTTGG 1062
|| | || | | | ||| ||||| | || || || |||| |||||||| ||||||||
Sbjct 901 TC--CGCA-AC-T-G-CTGCTGAATCA-CACCGCGAACAAGTTGTGGTTGGCTTTGTTGG 953
Query 1063 GTACCCAAATGTTGGAAAGAGTTCTACAATCAATGCATTGGTGGGTCAGAAGCGAACAGG 1122
|||||| ||||| ||||||||||| |||||||| || ||||| |||||||||||||||||
Sbjct 954 GTACCCGAATGTGGGAAAGAGTTCGACAATCAACGCGTTGGTAGGTCAGAAGCGAACAGG 1013
Query 1123 TGTCACCTCTACCCCAGGAAAAACAAAGCATTTCCAGACTTTGATCATCTCTGATGAGCT 1182
|||||| |||||||| || ||||| |||||||||||||| ||||| ||||| || || ||
Sbjct 1014 TGTCACATCTACCCCCGGGAAAACGAAGCATTTCCAGACATTGATAATCTCCGAGGATCT 1073
Query 1183 TATGCTATGCGATTGCCCTGGTTTAGTCTTCCCTTCGTTCTCAAGCTCAAGATATGAAAT 1242
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1074 AATGCTCTGCGATTGCCCTGGTTTAGTCTTCCCTTCATTCTCAAGCTCAAGATATGAAAT 1133
Query 1243 GATTGCTTCTGGTGTACTTCCGATTGACCGGATGACGGAGCACCGTGAAGCTATTCAGGT 1302
|||||||||||| || ||||| || ||||||||||| |||||||||||||||||| ||||
Sbjct 1134 GATTGCTTCTGGAGTTCTTCCAATAGACCGGATGACCGAGCACCGTGAAGCTATTAAGGT 1193
Query 1303 GGTGGCTGACAAG-GTCCCTCGCCGTGTAATTGAG-AGTGTGTACAACATTTCTCTTCCT 1360
|||||||| | | || ||||| | || |||||| | |||||||||||| ||||| |||
Sbjct 1194 TGTGGCTGA-ACGTGTTCCTCGGCATGCCATTGAGGA-TGTGTACAACATCTCTCTACCT 1251
Query 1361 AAACCCAAAACCTATGAGCGTCAGTCCCGCCCGCCTCATGC-TGCAGAGCT-CTTAAAAA 1418
|||||||||| |||||||| |||||| ||||| || | ||| | ||||||| || || ||
Sbjct 1252 AAACCCAAAAGCTATGAGCCTCAGTCACGCCCACCACTTGCAT-CAGAGCTTCT-AAGAA 1309
Query 1419 GTTACTGTGCTT-CTCGTGGCTATGTTGCCTCGAGTGGACTACCGGATGAAACGAA-AGC 1476
|||||| ||| ||||||||||||||||||| ||||||||||| ||||| || || |||
Sbjct 1310 CTTACTGC-CTTTCTCGTGGCTATGTTGCCTCTAGTGGACTACCTGATGAGAC-AAGAGC 1367
Query 1477 TGCAAGGCTGATTCTGAAAGATTACATTGGAGGTAAGCTGCCACATTATGCAATGCC 1533
|| |||| |||||||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 1368 AGCTAGGCAGATTCTGAAAGATTACATTGAAGGTAAGCTTCCACATTTTGCAATGCC 1424
Score = 69.4 bits (37), Expect = 1e-10
Identities = 73/90 (81%), Gaps = 4/90 (4%)
Strand=Plus/Plus
Query 1654 TCCTGGTATTGATGATGTGCTAGATGATCTGAGCTCGTTTGATCTTGCCAATGGGCTTAA 1713
|| |||| ||||| | || ||||||||||||||||||||||||||||| ||||| ||
Sbjct 1536 TCTTGGTCTTGATCAAGTTCTAGATGATCTGAGCTCGTTTGATCTTGCAAATGGAATTGG 1595
Query 1714 GTCTT-CAAAGAAAGTGACAGCA-AAGAAG 1741
|||| |||| || | |||||| ||||||
Sbjct 1596 GTCTAACAAA-AA-GAAACAGCACAAGAAG 1623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81322673075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5