BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08430.1
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919587 jgi|Araly1|919587|scaffold_100868.1 2193 0.0
Ahg334132 jgi|Araly1|334132|fgenesh1_pg.C_scaffold_1000697 1539 0.0
> Ahg919587 jgi|Araly1|919587|scaffold_100868.1
Length=1514
Score = 2193 bits (1187), Expect = 0.0
Identities = 1357/1436 (94%), Gaps = 24/1436 (2%)
Strand=Plus/Plus
Query 64 GAGTGACCATCAAAAGGTGTTATGGAGAAAGTGAGAGAGATAGTGAGAGAAGGGATTAGA 123
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 GAGTGATCATCAGGAGGTGTTATGGAGAAAGTGAGAGAGATAGTGAGAGAAGGGATAAGA 60
Query 124 GTAGGGAATGAAGACCCGAGAAGAATTATTCATGCTTTCAAAGTGGGACTTGCTCTTGTT 183
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GTAGGGAATGAAGACCCGAGAAGAATAATTCATGCTTTCAAAGTGGGACTTGCTCTTGTT 120
Query 184 TTGGTCTCTTCCTTCTATTATTACCAACCTTTCGGTCCTTTCACCGATTACTTCGGTATC 243
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCGTCTCTTCCTTCTATTATTACCAACCTTTCGGTCCTTTCACCGATTACTTCGGTATC 180
Query 244 AATGCAATGTGGGCTGTCATGACCGTCGTTGTTGTCTTTGAATTCTCCGTAGGGGCTACA 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 AATGCAATGTGGGCTGTCATGACCGTCGTTGTTGTCTTTGAATTCTCCGTAGGGGCCACA 240
Query 304 CTTGGGAAAGGACTAAATAGAGGAGTGGCAACATTAGTAGCAGGAGGACTAGGAATTGGA 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTGGGAAAGGACTAAATAGAGGAGTGGCAACATTAGTAGCAGGAGGACTAGGAATTGGA 300
Query 364 GCTCATCAACTAGCAAGATTGTCGGGTGCAACAGTGGAACCTATTCTTTTGGTCATGTTG 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTCATCGACTAGCAAGATTGTCGGGTGCAACAGTGGAACCTATTCTTTTGGTCATGTTG 360
Query 424 GTCTTTGTGCAAGCTGCGTTGTCGACGTTCGTAAGGTTTTTCCCATGGGTAAAGACAAAG 483
||||||||||||||||| ||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 361 GTCTTTGTGCAAGCTGCCTTGTCGACGTTTGTGAGGTTCTTCCCATGGGTGAAGACAAAA 420
Query 484 TTCGATTATGGGATATTGATATTCATATTGACGTTCGCGCTGATATCGTTGTCGGGGTTT 543
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 TTCGATTATGGGATATTGATATTCATATTGACGTTCGCGTTGATATCGTTGTCGGGGTTT 480
Query 544 AGAGACGAAGAGATAATGGATTTGGCAGAAAGCAGACTATCGACAGTGGTGATTGGAGGA 603
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 481 AGAGACGAAGAGATAATGGATTTGGCAGAAAGCAGACTTTCAACAGTGGTGATTGGAGGA 540
Query 604 GTCAGTTGCATCCTTATCTCTATCTTTGTCTGTCCTGTTTGGGCTGGACAAGATCTACAT 663
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 GTCAGTTGCGTCCTTATCTCTATCTTTGTCTGTCCTGTTTGGGCTGGACAAGATCTTCAT 600
Query 664 TCTCTCCTTGCCTCTAACTTTGACACTCTCTCCCACTTCCTTCAAGATTTTGGGGACGAA 723
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 TCTCTCCTTGCCTCTAACTTTGACACACTCTCCCACTTCCTTCAAGATTTTGGGGACGAA 660
Query 724 TATTTTGAAGCGAGAGA-GAAGGGGGACTACAAAGTAGTGGAGAAGAGGAAAAAGAATCT 782
|||||||||||||| || || |||| |||| ||||| |||||||||||||||||||||||
Sbjct 661 TATTTTGAAGCGAGTGAAGATGGGG-ACTATAAAGTGGTGGAGAAGAGGAAAAAGAATCT 719
Query 783 TGAGA-GATATAAAAGTGTTCTTGACTCCAAAAGCGATGAAGAAGCTTTGGCTAATTACG 841
|| || |||| ||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TG-GAAGATACAAAAGGGTTCTTGACTCCAAAAGCGATGAAGAAGCTTTGGCTAATTTCG 778
Query 842 CAGAATGGGAACCGCCTCATGGACAATTTAGGTTTAGGCATCCATGGAAACAATATGTTG 901
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CAGAATGGGAACCGCCGCATGGACAATTTAGGTTTAGGCATCCATGGAAACAATATGTTG 838
Query 902 CCGTTGGTGCATTACTCCGGCAGTGTGCCTACAGGATTGATGCCTTGAATTCATACATCA 961
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CCGTTGGCGCATTACTCCGGCAGTGTGCCTACAGGATTGATGCCTTGAATTCATACATCA 898
Query 962 ACTCAGATTTTCAGATCCCAGTGGACATAAAAAAGAAATTAGAAACACCATTAAGAAGAA 1021
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACTCAGATTTTCAGATCCCAATGGACATAAAAAAGAAATTAGAAACACCATTAAGAAGAA 958
Query 1022 TGAGCTCGGAATCGGGAAACTCAATGAAAGAAATGTCCATTTCACTAAA-ACAAATGATA 1080
|||||||||| |||||||| ||||||||||||||||| |||||| |||| | ||||||||
Sbjct 959 TGAGCTCGGAGTCGGGAAAATCAATGAAAGAAATGTCGATTTCATTAAAGA-AAATGATA 1017
Query 1081 AAATCATCTTCTTCTGATATCCATGTCTCAAACTCACAAGCTGCATGCAAATCTCTTTCT 1140
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1018 AAATCATCTTCTTCTGATATCCATGTCTCAAACTCACAATCTGCATGCAAAGCTCTTTCT 1077
Query 1141 ACTTTACTTAAATCAGGCATCTTGAACGATGTTGAGCCTCTTCAAATGATCTCATTGATG 1200
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1078 ACTTTACTTAAATCAGGCATCTTGAACGATGTTGAGCCTCTTCAAATGATTTCATTGCTC 1137
Query 1201 ACGACTGTCTCCATGCTCATAGATATTGTTAACTTAACCGAAAAGATCTCGGAATCTGTA 1260
|||||||||||| | ||||||||||||||||| ||||||||||| ||||| ||||| |||
Sbjct 1138 ACGACTGTCTCCCTACTCATAGATATTGTTAATTTAACCGAAAAAATCTCAGAATCCGTA 1197
Query 1261 CACGAGCTTGCATCCGCTGCAAGATTTAAGAACAAGATGAGGCCGACCGTGCTATACGAG 1320
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1198 CACGAGCTTGCATCCGCTGCAAGATTTAAGAACAAGATGAGGCCGACGGTGCTATTTGAG 1257
Query 1321 AAGTCGGATTCCGGAAGCATTGGTCGTGCCATGCCAATAGATTCTCATGAAGATCATCAT 1380
||||||||||| ||||| |||||||||||||||||| |||| |||||||||||| |||||
Sbjct 1258 AAGTCGGATTCTGGAAGAATTGGTCGTGCCATGCCAGTAGAATCTCATGAAGATGATCAT 1317
Query 1381 GTTGTCACAGTTTTACATGACGTTGATAATGATAGATCAAACAATGTTGATGATTCACGT 1440
||||||||||||||||||||||||||||| || |||||||| | | | ||
Sbjct 1318 GTTGTCACAGTTTTACATGACGTTGATAA--AT----CAAACAAT-TCG------C--GT 1362
Query 1441 GGAGGGAGTTCACAGGACTCATGTCATCAT---GTTGCCATAAAGATTGTTGATGA 1493
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1363 GGAGAGAGTTCACAGGACTCATGTCATCATCATGTTGCCATAAAGATTGTTGATGA 1418
Score = 69.4 bits (37), Expect = 7e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1505 ATGAAAAACATGAAGATGGTGAAATACATGTACATAC 1541
|||||||||||||||||||||||||||||||||||||
Sbjct 1415 ATGAAAAACATGAAGATGGTGAAATACATGTACATAC 1451
> Ahg334132 jgi|Araly1|334132|fgenesh1_pg.C_scaffold_1000697
Length=1506
Score = 1539 bits (833), Expect = 0.0
Identities = 1275/1480 (86%), Gaps = 64/1480 (4%)
Strand=Plus/Plus
Query 85 ATGGAGAAAGTGAGAGAGATAGTGAGAGAAGGGATTAGAGTAGGGAATGAAGACCCGAGA 144
|||||||||||||||||||||||||||||||| | |||||||| || ||||| ||||||
Sbjct 1 ATGGAGAAAGTGAGAGAGATAGTGAGAGAAGGCAGAAGAGTAGGAAAAGAAGATCCGAGA 60
Query 145 AGAATTATT-CATGCTTTCAAAGTGGGACTTGCTCTTGTTTTGGTCTCTTCCTTCTATTA 203
||| | | | || ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 AGAGT-AGTGCACGCTTTCAAAGTGGGACTTGCTCTTGCTTTGGTCTCTTCCTTCTATTA 119
Query 204 TTACCAACCTTTCGGTCCTTTCACCGATTACTTCGGTATCAATGCAATGTGGGCTGTCAT 263
|| ||||||| | || | || ||| |||||||| |||||||||||||||| |||||
Sbjct 120 TTGCCAACCT--C--TC-T---AC-GATAACTTCGGTGTCAATGCAATGTGGGCAGTCAT 170
Query 264 GACCGTCGTTGTTGTCTTTGAATTCTCCGTAGGGGCTACACTTGGGAAAGGACTAAATAG 323
|||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 171 GACCGTCGTTGTCGTCTTTGAATTCTCTGTAGGGGCCACACTTGGGAAAGGACTAAATAG 230
Query 324 AGGAGTGGCAACATTAGTAGCAGGAGGACTAGGAATTGGAGCTCATCAACTAGCAAGATT 383
|| |||||||||||| ||||||||||||||||| |||||||| ||||| |||||||| ||
Sbjct 231 AGCAGTGGCAACATTGGTAGCAGGAGGACTAGGGATTGGAGCGCATCACCTAGCAAGTTT 290
Query 384 GTCGGGTGC-AACAGTGGAACCTATTCTT-TTGGTCATGTTGGTCTTTGTGCAAGCTGCG 441
||| || || |||||| ||||| |||||| ||| ||| || |||||||||||||||||
Sbjct 291 GTCCGG-GCCAACAGTAGAACCCATTCTTCTTGC-CATCTTTGTCTTTGTGCAAGCTGCA 348
Query 442 TTGTCGACGTTCGTAAGGTTTTTCCCATGGGTAAAGACAA-AGT-TCGATTATGGGATAT 499
||||||||||| || ||||| ||||| |||| ||| ||| | | | ||||||||| |||
Sbjct 349 TTGTCGACGTTTGTGAGGTTCTTCCCGCGGGTGAAGGCAAGA-TAT-GATTATGGGGTAT 406
Query 500 TGATATTCATATTGACGTTCGCGCTGATATC-GTTGTCGGGGTTTAGAGACGAAGAGATA 558
|||||||||||||||||||||| |||||||| || ||||||||||||||| || ||||||
Sbjct 407 TGATATTCATATTGACGTTCGCACTGATATCAGT-GTCGGGGTTTAGAGAGGACGAGATA 465
Query 559 ATGGATTTGGCAG-A-AAGCAGACTATCGACAGTGGTGATTGGAGGAGTCAGTTGCATCC 616
| |||||||| | | ||| ||||||||||||||| | || |||||||| |||||| | |
Sbjct 466 TTAGATTTGGC-GCATAAG-AGACTATCGACAGTGATAATGGGAGGAGTTAGTTGCGTAC 523
Query 617 TTATCTCTATCTTTGTCTGTCCTGTTTGGGCTGGACAAGATCTACATTCTCTCCTTGCCT 676
||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||
Sbjct 524 TTATCTCTATCTTTGTCTGCCCTGTTTGGGCAGGACAAGACCTTCATTCTCTCCTTGCCT 583
Query 677 CTAACTTTGACACTCTCT-CCCACTTCCTTCAAGATTTTGGGGACGAATATTTTGAAGCG 735
| ||||||||||| || | |||||||||||||||| ||||||||||||||||||||||||
Sbjct 584 CCAACTTTGACACACT-TGCCCACTTCCTTCAAGAATTTGGGGACGAATATTTTGAAGCG 642
Query 736 AGAGAGAAGGGGGAC-TACAAAGTAG-TGGAGAAGAGGAAAAAGAATCTTGAGAGATATA 793
| |||| | |||||| | ||||| || |||||||||||| || |||||||||||||||||
Sbjct 643 ACAGAGGATGGGGACAT-CAAAG-AGGTGGAGAAGAGGAGAAGGAATCTTGAGAGATATA 700
Query 794 AAAGTGTTCTTGACTCCAAAAGCGATGAAGAAGCTTTGGCTAATTACGCAGAATGGGAAC 853
|||||||||| |||| |||||| ||||||||||||||||||||| |||| |||||||||
Sbjct 701 AAAGTGTTCTCAACTCAAAAAGCAATGAAGAAGCTTTGGCTAATTTCGCAAAATGGGAAC 760
Query 854 CGCCTCATGGACAATTTAGGTTTAGGCATCCATGGAAACAATATGTTGCCGTTGGTGCAT 913
||| |||||| |||||||| ||| |||||||||||||||||||| ||||||| |||||||
Sbjct 761 CGCGTCATGGCCAATTTAGATTTCGGCATCCATGGAAACAATATATTGCCGTGGGTGCAT 820
Query 914 TACTCCGGCAGTGTGCCTACAGGATTGATGCCTTGAATTCATACATCAACTCAGATTTTC 973
|||||||||| ||||| | | |||||||||||||||||||| |||||||||||||| | |
Sbjct 821 TACTCCGGCAATGTGCTTGCCGGATTGATGCCTTGAATTCAAACATCAACTCAGATATGC 880
Query 974 AGATCCCAGTGGACAT-AAAAAAGAAATTAGAA-ACACCATTAAGAAGAATGAGCTCGGA 1031
|||||||| ||||||| |||||| |||||||| | ||||||||||||||||||||||||
Sbjct 881 AGATCCCAATGGACATTAAAAAA-AAATTAGAGGA-ACCATTAAGAAGAATGAGCTCGGA 938
Query 1032 ATCGGGAAACTCAATGAAAGAAATGTCCATTTCACTAAA-ACAAATGATAAAATCATCTT 1090
||||| || |||||||||||| ||||||||||| |||| | |||||| |||||||||||
Sbjct 939 GTCGGGGAAGTCAATGAAAGAAGTGTCCATTTCATTAAAGA-AAATGACAAAATCATCTT 997
Query 1091 CTTCTGATATCCATGTC-TCAAACTCACAAGCTGCATGCAAATCTCTTTCTACTTTACTT 1149
||| ||||||||||||| | |||||||||| |||| |||||| ||||||| |||||||||
Sbjct 998 CTTTTGATATCCATGTCGT-AAACTCACAATCTGCCTGCAAAACTCTTTCAACTTTACTT 1056
Query 1150 AAATCAGGCATCTTGAACGATGTTGAGCCTCTTCAAATGATCTCATTGATGACGACTGTC 1209
|||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1057 AAATCAGGCATCTTAAAAGATGTTGAGCCTCTACAAATGATCTCATTGATGACGACAGTC 1116
Query 1210 TC-CATGCTCATAGATATTGTTAACTTAACCGAAAAGATCTCGGAATCTGTACACGAGCT 1268
|| | || |||| || |||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 1117 TCTC-TGTTCATTGACATTGTTAATTTAACCGAAAAGATCTCAGAATCCGTACATGAGCT 1175
Query 1269 TGCATCCGCTGCAAGATTTAAGAACAAGATGAGGCCGACCGTGCTATACGAGAAGTCGGA 1328
||||||||| |||| |||||||||||||| || ||| | | | | || ||| ||
Sbjct 1176 TGCATCCGCAGCAAAATTTAAGAACAAGACGAAGCC-A---T-C----C-AG--GTCAGA 1223
Query 1329 TTCCGGAAGCATTGGTCGTGCCATGCCAA-TAGATTCTCATGAAGATCATCAT-GTTGTC 1386
||| ||||| ||||||| || |||||||| || || ||||||| ||||||||| || ||
Sbjct 1224 TTCGGGAAGGATTGGTCATGACATGCCAAATAAAT-CTCATGATGATCATCATCGTCATC 1282
Query 1387 ACAGTT-TTACA-TG--ACGTTGATAATGATAGATCAAACAATGTTGATGATTCACGTGG 1442
| ||| ||||| | | || ||| ||| | |||||||||||||||| | || | |||
Sbjct 1283 GC-GTTGTTACAATTTTATGT-GATGTTGACACATCAAACAATGTTGATCAATCGCATGG 1340
Query 1443 AGGGAGT-TCACAGGACTCATGTCATCATGTTGCCATAAAGATTGTTGATGATAACTCAA 1501
|| || | ||| |||||||||||||||||| || |||||||||| |||||| | || |
Sbjct 1341 AGAGA-TCTCAGTGGACTCATGTCATCATGTCGCGATAAAGATTGACGATGATGATTCGA 1399
Query 1502 ACCATGAAAAACATGAAGATGGTGAAATACATGTACATAC 1541
||||||||||||||||||||||| ||||||||||||||
Sbjct 1400 TTCATGAAAAACATGAAGATGGTGATATACATGTACATAC 1439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58658977300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5