BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08430.1 Length=1566 Score E Sequences producing significant alignments: (Bits) Value Ahg919587 jgi|Araly1|919587|scaffold_100868.1 2193 0.0 Ahg334132 jgi|Araly1|334132|fgenesh1_pg.C_scaffold_1000697 1539 0.0 > Ahg919587 jgi|Araly1|919587|scaffold_100868.1 Length=1514 Score = 2193 bits (1187), Expect = 0.0 Identities = 1357/1436 (94%), Gaps = 24/1436 (2%) Strand=Plus/Plus Query 64 GAGTGACCATCAAAAGGTGTTATGGAGAAAGTGAGAGAGATAGTGAGAGAAGGGATTAGA 123 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 GAGTGATCATCAGGAGGTGTTATGGAGAAAGTGAGAGAGATAGTGAGAGAAGGGATAAGA 60 Query 124 GTAGGGAATGAAGACCCGAGAAGAATTATTCATGCTTTCAAAGTGGGACTTGCTCTTGTT 183 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 GTAGGGAATGAAGACCCGAGAAGAATAATTCATGCTTTCAAAGTGGGACTTGCTCTTGTT 120 Query 184 TTGGTCTCTTCCTTCTATTATTACCAACCTTTCGGTCCTTTCACCGATTACTTCGGTATC 243 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTCGTCTCTTCCTTCTATTATTACCAACCTTTCGGTCCTTTCACCGATTACTTCGGTATC 180 Query 244 AATGCAATGTGGGCTGTCATGACCGTCGTTGTTGTCTTTGAATTCTCCGTAGGGGCTACA 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 181 AATGCAATGTGGGCTGTCATGACCGTCGTTGTTGTCTTTGAATTCTCCGTAGGGGCCACA 240 Query 304 CTTGGGAAAGGACTAAATAGAGGAGTGGCAACATTAGTAGCAGGAGGACTAGGAATTGGA 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CTTGGGAAAGGACTAAATAGAGGAGTGGCAACATTAGTAGCAGGAGGACTAGGAATTGGA 300 Query 364 GCTCATCAACTAGCAAGATTGTCGGGTGCAACAGTGGAACCTATTCTTTTGGTCATGTTG 423 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GCTCATCGACTAGCAAGATTGTCGGGTGCAACAGTGGAACCTATTCTTTTGGTCATGTTG 360 Query 424 GTCTTTGTGCAAGCTGCGTTGTCGACGTTCGTAAGGTTTTTCCCATGGGTAAAGACAAAG 483 ||||||||||||||||| ||||||||||| || ||||| ||||||||||| |||||||| Sbjct 361 GTCTTTGTGCAAGCTGCCTTGTCGACGTTTGTGAGGTTCTTCCCATGGGTGAAGACAAAA 420 Query 484 TTCGATTATGGGATATTGATATTCATATTGACGTTCGCGCTGATATCGTTGTCGGGGTTT 543 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 421 TTCGATTATGGGATATTGATATTCATATTGACGTTCGCGTTGATATCGTTGTCGGGGTTT 480 Query 544 AGAGACGAAGAGATAATGGATTTGGCAGAAAGCAGACTATCGACAGTGGTGATTGGAGGA 603 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 481 AGAGACGAAGAGATAATGGATTTGGCAGAAAGCAGACTTTCAACAGTGGTGATTGGAGGA 540 Query 604 GTCAGTTGCATCCTTATCTCTATCTTTGTCTGTCCTGTTTGGGCTGGACAAGATCTACAT 663 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 541 GTCAGTTGCGTCCTTATCTCTATCTTTGTCTGTCCTGTTTGGGCTGGACAAGATCTTCAT 600 Query 664 TCTCTCCTTGCCTCTAACTTTGACACTCTCTCCCACTTCCTTCAAGATTTTGGGGACGAA 723 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 601 TCTCTCCTTGCCTCTAACTTTGACACACTCTCCCACTTCCTTCAAGATTTTGGGGACGAA 660 Query 724 TATTTTGAAGCGAGAGA-GAAGGGGGACTACAAAGTAGTGGAGAAGAGGAAAAAGAATCT 782 |||||||||||||| || || |||| |||| ||||| ||||||||||||||||||||||| Sbjct 661 TATTTTGAAGCGAGTGAAGATGGGG-ACTATAAAGTGGTGGAGAAGAGGAAAAAGAATCT 719 Query 783 TGAGA-GATATAAAAGTGTTCTTGACTCCAAAAGCGATGAAGAAGCTTTGGCTAATTACG 841 || || |||| ||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 720 TG-GAAGATACAAAAGGGTTCTTGACTCCAAAAGCGATGAAGAAGCTTTGGCTAATTTCG 778 Query 842 CAGAATGGGAACCGCCTCATGGACAATTTAGGTTTAGGCATCCATGGAAACAATATGTTG 901 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 CAGAATGGGAACCGCCGCATGGACAATTTAGGTTTAGGCATCCATGGAAACAATATGTTG 838 Query 902 CCGTTGGTGCATTACTCCGGCAGTGTGCCTACAGGATTGATGCCTTGAATTCATACATCA 961 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 CCGTTGGCGCATTACTCCGGCAGTGTGCCTACAGGATTGATGCCTTGAATTCATACATCA 898 Query 962 ACTCAGATTTTCAGATCCCAGTGGACATAAAAAAGAAATTAGAAACACCATTAAGAAGAA 1021 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 899 ACTCAGATTTTCAGATCCCAATGGACATAAAAAAGAAATTAGAAACACCATTAAGAAGAA 958 Query 1022 TGAGCTCGGAATCGGGAAACTCAATGAAAGAAATGTCCATTTCACTAAA-ACAAATGATA 1080 |||||||||| |||||||| ||||||||||||||||| |||||| |||| | |||||||| Sbjct 959 TGAGCTCGGAGTCGGGAAAATCAATGAAAGAAATGTCGATTTCATTAAAGA-AAATGATA 1017 Query 1081 AAATCATCTTCTTCTGATATCCATGTCTCAAACTCACAAGCTGCATGCAAATCTCTTTCT 1140 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1018 AAATCATCTTCTTCTGATATCCATGTCTCAAACTCACAATCTGCATGCAAAGCTCTTTCT 1077 Query 1141 ACTTTACTTAAATCAGGCATCTTGAACGATGTTGAGCCTCTTCAAATGATCTCATTGATG 1200 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 1078 ACTTTACTTAAATCAGGCATCTTGAACGATGTTGAGCCTCTTCAAATGATTTCATTGCTC 1137 Query 1201 ACGACTGTCTCCATGCTCATAGATATTGTTAACTTAACCGAAAAGATCTCGGAATCTGTA 1260 |||||||||||| | ||||||||||||||||| ||||||||||| ||||| ||||| ||| Sbjct 1138 ACGACTGTCTCCCTACTCATAGATATTGTTAATTTAACCGAAAAAATCTCAGAATCCGTA 1197 Query 1261 CACGAGCTTGCATCCGCTGCAAGATTTAAGAACAAGATGAGGCCGACCGTGCTATACGAG 1320 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 1198 CACGAGCTTGCATCCGCTGCAAGATTTAAGAACAAGATGAGGCCGACGGTGCTATTTGAG 1257 Query 1321 AAGTCGGATTCCGGAAGCATTGGTCGTGCCATGCCAATAGATTCTCATGAAGATCATCAT 1380 ||||||||||| ||||| |||||||||||||||||| |||| |||||||||||| ||||| Sbjct 1258 AAGTCGGATTCTGGAAGAATTGGTCGTGCCATGCCAGTAGAATCTCATGAAGATGATCAT 1317 Query 1381 GTTGTCACAGTTTTACATGACGTTGATAATGATAGATCAAACAATGTTGATGATTCACGT 1440 ||||||||||||||||||||||||||||| || |||||||| | | | || Sbjct 1318 GTTGTCACAGTTTTACATGACGTTGATAA--AT----CAAACAAT-TCG------C--GT 1362 Query 1441 GGAGGGAGTTCACAGGACTCATGTCATCAT---GTTGCCATAAAGATTGTTGATGA 1493 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1363 GGAGAGAGTTCACAGGACTCATGTCATCATCATGTTGCCATAAAGATTGTTGATGA 1418 Score = 69.4 bits (37), Expect = 7e-11 Identities = 37/37 (100%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 1505 ATGAAAAACATGAAGATGGTGAAATACATGTACATAC 1541 ||||||||||||||||||||||||||||||||||||| Sbjct 1415 ATGAAAAACATGAAGATGGTGAAATACATGTACATAC 1451 > Ahg334132 jgi|Araly1|334132|fgenesh1_pg.C_scaffold_1000697 Length=1506 Score = 1539 bits (833), Expect = 0.0 Identities = 1275/1480 (86%), Gaps = 64/1480 (4%) Strand=Plus/Plus Query 85 ATGGAGAAAGTGAGAGAGATAGTGAGAGAAGGGATTAGAGTAGGGAATGAAGACCCGAGA 144 |||||||||||||||||||||||||||||||| | |||||||| || ||||| |||||| Sbjct 1 ATGGAGAAAGTGAGAGAGATAGTGAGAGAAGGCAGAAGAGTAGGAAAAGAAGATCCGAGA 60 Query 145 AGAATTATT-CATGCTTTCAAAGTGGGACTTGCTCTTGTTTTGGTCTCTTCCTTCTATTA 203 ||| | | | || ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 AGAGT-AGTGCACGCTTTCAAAGTGGGACTTGCTCTTGCTTTGGTCTCTTCCTTCTATTA 119 Query 204 TTACCAACCTTTCGGTCCTTTCACCGATTACTTCGGTATCAATGCAATGTGGGCTGTCAT 263 || ||||||| | || | || ||| |||||||| |||||||||||||||| ||||| Sbjct 120 TTGCCAACCT--C--TC-T---AC-GATAACTTCGGTGTCAATGCAATGTGGGCAGTCAT 170 Query 264 GACCGTCGTTGTTGTCTTTGAATTCTCCGTAGGGGCTACACTTGGGAAAGGACTAAATAG 323 |||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 171 GACCGTCGTTGTCGTCTTTGAATTCTCTGTAGGGGCCACACTTGGGAAAGGACTAAATAG 230 Query 324 AGGAGTGGCAACATTAGTAGCAGGAGGACTAGGAATTGGAGCTCATCAACTAGCAAGATT 383 || |||||||||||| ||||||||||||||||| |||||||| ||||| |||||||| || Sbjct 231 AGCAGTGGCAACATTGGTAGCAGGAGGACTAGGGATTGGAGCGCATCACCTAGCAAGTTT 290 Query 384 GTCGGGTGC-AACAGTGGAACCTATTCTT-TTGGTCATGTTGGTCTTTGTGCAAGCTGCG 441 ||| || || |||||| ||||| |||||| ||| ||| || ||||||||||||||||| Sbjct 291 GTCCGG-GCCAACAGTAGAACCCATTCTTCTTGC-CATCTTTGTCTTTGTGCAAGCTGCA 348 Query 442 TTGTCGACGTTCGTAAGGTTTTTCCCATGGGTAAAGACAA-AGT-TCGATTATGGGATAT 499 ||||||||||| || ||||| ||||| |||| ||| ||| | | | ||||||||| ||| Sbjct 349 TTGTCGACGTTTGTGAGGTTCTTCCCGCGGGTGAAGGCAAGA-TAT-GATTATGGGGTAT 406 Query 500 TGATATTCATATTGACGTTCGCGCTGATATC-GTTGTCGGGGTTTAGAGACGAAGAGATA 558 |||||||||||||||||||||| |||||||| || ||||||||||||||| || |||||| Sbjct 407 TGATATTCATATTGACGTTCGCACTGATATCAGT-GTCGGGGTTTAGAGAGGACGAGATA 465 Query 559 ATGGATTTGGCAG-A-AAGCAGACTATCGACAGTGGTGATTGGAGGAGTCAGTTGCATCC 616 | |||||||| | | ||| ||||||||||||||| | || |||||||| |||||| | | Sbjct 466 TTAGATTTGGC-GCATAAG-AGACTATCGACAGTGATAATGGGAGGAGTTAGTTGCGTAC 523 Query 617 TTATCTCTATCTTTGTCTGTCCTGTTTGGGCTGGACAAGATCTACATTCTCTCCTTGCCT 676 ||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||| Sbjct 524 TTATCTCTATCTTTGTCTGCCCTGTTTGGGCAGGACAAGACCTTCATTCTCTCCTTGCCT 583 Query 677 CTAACTTTGACACTCTCT-CCCACTTCCTTCAAGATTTTGGGGACGAATATTTTGAAGCG 735 | ||||||||||| || | |||||||||||||||| |||||||||||||||||||||||| Sbjct 584 CCAACTTTGACACACT-TGCCCACTTCCTTCAAGAATTTGGGGACGAATATTTTGAAGCG 642 Query 736 AGAGAGAAGGGGGAC-TACAAAGTAG-TGGAGAAGAGGAAAAAGAATCTTGAGAGATATA 793 | |||| | |||||| | ||||| || |||||||||||| || ||||||||||||||||| Sbjct 643 ACAGAGGATGGGGACAT-CAAAG-AGGTGGAGAAGAGGAGAAGGAATCTTGAGAGATATA 700 Query 794 AAAGTGTTCTTGACTCCAAAAGCGATGAAGAAGCTTTGGCTAATTACGCAGAATGGGAAC 853 |||||||||| |||| |||||| ||||||||||||||||||||| |||| ||||||||| Sbjct 701 AAAGTGTTCTCAACTCAAAAAGCAATGAAGAAGCTTTGGCTAATTTCGCAAAATGGGAAC 760 Query 854 CGCCTCATGGACAATTTAGGTTTAGGCATCCATGGAAACAATATGTTGCCGTTGGTGCAT 913 ||| |||||| |||||||| ||| |||||||||||||||||||| ||||||| ||||||| Sbjct 761 CGCGTCATGGCCAATTTAGATTTCGGCATCCATGGAAACAATATATTGCCGTGGGTGCAT 820 Query 914 TACTCCGGCAGTGTGCCTACAGGATTGATGCCTTGAATTCATACATCAACTCAGATTTTC 973 |||||||||| ||||| | | |||||||||||||||||||| |||||||||||||| | | Sbjct 821 TACTCCGGCAATGTGCTTGCCGGATTGATGCCTTGAATTCAAACATCAACTCAGATATGC 880 Query 974 AGATCCCAGTGGACAT-AAAAAAGAAATTAGAA-ACACCATTAAGAAGAATGAGCTCGGA 1031 |||||||| ||||||| |||||| |||||||| | |||||||||||||||||||||||| Sbjct 881 AGATCCCAATGGACATTAAAAAA-AAATTAGAGGA-ACCATTAAGAAGAATGAGCTCGGA 938 Query 1032 ATCGGGAAACTCAATGAAAGAAATGTCCATTTCACTAAA-ACAAATGATAAAATCATCTT 1090 ||||| || |||||||||||| ||||||||||| |||| | |||||| ||||||||||| Sbjct 939 GTCGGGGAAGTCAATGAAAGAAGTGTCCATTTCATTAAAGA-AAATGACAAAATCATCTT 997 Query 1091 CTTCTGATATCCATGTC-TCAAACTCACAAGCTGCATGCAAATCTCTTTCTACTTTACTT 1149 ||| ||||||||||||| | |||||||||| |||| |||||| ||||||| ||||||||| Sbjct 998 CTTTTGATATCCATGTCGT-AAACTCACAATCTGCCTGCAAAACTCTTTCAACTTTACTT 1056 Query 1150 AAATCAGGCATCTTGAACGATGTTGAGCCTCTTCAAATGATCTCATTGATGACGACTGTC 1209 |||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1057 AAATCAGGCATCTTAAAAGATGTTGAGCCTCTACAAATGATCTCATTGATGACGACAGTC 1116 Query 1210 TC-CATGCTCATAGATATTGTTAACTTAACCGAAAAGATCTCGGAATCTGTACACGAGCT 1268 || | || |||| || |||||||| ||||||||||||||||| ||||| ||||| ||||| Sbjct 1117 TCTC-TGTTCATTGACATTGTTAATTTAACCGAAAAGATCTCAGAATCCGTACATGAGCT 1175 Query 1269 TGCATCCGCTGCAAGATTTAAGAACAAGATGAGGCCGACCGTGCTATACGAGAAGTCGGA 1328 ||||||||| |||| |||||||||||||| || ||| | | | | || ||| || Sbjct 1176 TGCATCCGCAGCAAAATTTAAGAACAAGACGAAGCC-A---T-C----C-AG--GTCAGA 1223 Query 1329 TTCCGGAAGCATTGGTCGTGCCATGCCAA-TAGATTCTCATGAAGATCATCAT-GTTGTC 1386 ||| ||||| ||||||| || |||||||| || || ||||||| ||||||||| || || Sbjct 1224 TTCGGGAAGGATTGGTCATGACATGCCAAATAAAT-CTCATGATGATCATCATCGTCATC 1282 Query 1387 ACAGTT-TTACA-TG--ACGTTGATAATGATAGATCAAACAATGTTGATGATTCACGTGG 1442 | ||| ||||| | | || ||| ||| | |||||||||||||||| | || | ||| Sbjct 1283 GC-GTTGTTACAATTTTATGT-GATGTTGACACATCAAACAATGTTGATCAATCGCATGG 1340 Query 1443 AGGGAGT-TCACAGGACTCATGTCATCATGTTGCCATAAAGATTGTTGATGATAACTCAA 1501 || || | ||| |||||||||||||||||| || |||||||||| |||||| | || | Sbjct 1341 AGAGA-TCTCAGTGGACTCATGTCATCATGTCGCGATAAAGATTGACGATGATGATTCGA 1399 Query 1502 ACCATGAAAAACATGAAGATGGTGAAATACATGTACATAC 1541 ||||||||||||||||||||||| |||||||||||||| Sbjct 1400 TTCATGAAAAACATGAAGATGGTGATATACATGTACATAC 1439 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58658977300 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5