BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08440.1
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334132 jgi|Araly1|334132|fgenesh1_pg.C_scaffold_1000697 2344 0.0
Ahg919587 jgi|Araly1|919587|scaffold_100868.1 1458 0.0
Ahg344480 jgi|Araly1|344480|fgenesh1_pg.C_scaffold_4000822 885 0.0
> Ahg334132 jgi|Araly1|334132|fgenesh1_pg.C_scaffold_1000697
Length=1506
Score = 2344 bits (1269), Expect = 0.0
Identities = 1438/1517 (95%), Gaps = 22/1517 (1%)
Strand=Plus/Plus
Query 1 ATGgagaaagtgagagagattgtgagagaagggaggagagtaggtaaagaagatccgaga 60
|||||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||
Sbjct 1 ATGGAGAAAGTGAGAGAGATAGTGAGAGAAGGCAGAAGAGTAGGAAAAGAAGATCCGAGA 60
Query 61 agagTAGTGCATGCTTTCAAAGTGGGACTTGCTCTTGCTTTGGTCTCTTCCTTCTATTAT 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGTAGTGCACGCTTTCAAAGTGGGACTTGCTCTTGCTTTGGTCTCTTCCTTCTATTAT 120
Query 121 TATCAACCTCTCTACGACAACTTCGGTGTCAATGCAATGTGGGCTGTCATGACCGTCGTT 180
| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TGCCAACCTCTCTACGATAACTTCGGTGTCAATGCAATGTGGGCAGTCATGACCGTCGTT 180
Query 181 GTTGTTTTTGAATTCTCTGTAGGGGCCACACTTGGGAAAGGACTAAATAGAGCAGTGGCA 240
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTCGTCTTTGAATTCTCTGTAGGGGCCACACTTGGGAAAGGACTAAATAGAGCAGTGGCA 240
Query 241 ACATTGGTAGCAGGAGGACTAGGGATTGGAGCTCATCACCTAGCAAGTTTGTC-GGGTCC 299
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||
Sbjct 241 ACATTGGTAGCAGGAGGACTAGGGATTGGAGCGCATCACCTAGCAAGTTTGTCCGGG-CC 299
Query 300 AACAGTAGAACCCATTCTTCTTGCCATCTTTGTCTTTGTCCTAGCTGCATTGTCGACGTT 359
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 300 AACAGTAGAACCCATTCTTCTTGCCATCTTTGTCTTTGTGCAAGCTGCATTGTCGACGTT 359
Query 360 CGTGAGGTTCTTCCCGCGGGTGAAGGCAAGATATGATTATGGGGTATTGATATTCATATT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGTGAGGTTCTTCCCGCGGGTGAAGGCAAGATATGATTATGGGGTATTGATATTCATATT 419
Query 420 GACGTTCGCACTGATATCAGTTTCGGGGTTTAGAGAGGACGAGATATTGGATTTGGCGCA 479
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 420 GACGTTCGCACTGATATCAGTGTCGGGGTTTAGAGAGGACGAGATATTAGATTTGGCGCA 479
Query 480 TAAGAGACTATCGACAGTGATAATGGGAGGAGTTAGTTGCGTGCTTATCTCTATCTTTGT 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 TAAGAGACTATCGACAGTGATAATGGGAGGAGTTAGTTGCGTACTTATCTCTATCTTTGT 539
Query 540 CTGCCCTGTTTGGGCAGGACAAGACCTTCATTCTCTCCTTGCCTCCAACTTTGACACTCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 CTGCCCTGTTTGGGCAGGACAAGACCTTCATTCTCTCCTTGCCTCCAACTTTGACACACT 599
Query 600 CT-CCCACTTCCTTCAAGAATTTGGGGACGAATATTTTGAAGCGACAGAGGATGGGGACA 658
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 -TGCCCACTTCCTTCAAGAATTTGGGGACGAATATTTTGAAGCGACAGAGGATGGGGACA 658
Query 659 TCAAAGAAGTGGAGAAGAGGAGAAGGAATCTTGAGAGATATAAAAGTGTTCTCAACTCAA 718
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCAAAGAGGTGGAGAAGAGGAGAAGGAATCTTGAGAGATATAAAAGTGTTCTCAACTCAA 718
Query 719 AAAGCAATGAAGAAGCTTTGGCTAATTTTGCAAAATGGGAACCGCGTCATGGCCAATTTA 778
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 719 AAAGCAATGAAGAAGCTTTGGCTAATTTCGCAAAATGGGAACCGCGTCATGGCCAATTTA 778
Query 779 GATTTCGGCATCCATGGAGACAATATCTTGCCGTGGGTGCATTACTCCGGCAATCTGCTT 838
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||
Sbjct 779 GATTTCGGCATCCATGGAAACAATATATTGCCGTGGGTGCATTACTCCGGCAATGTGCTT 838
Query 839 ACCGAATTGATGCCTTGAATTCAAACATCAACTCAGATATGCAGATCCCAATGGACATTA 898
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GCCGGATTGATGCCTTGAATTCAAACATCAACTCAGATATGCAGATCCCAATGGACATTA 898
Query 899 AAAAGAAAAT-AGAGGAACCATTAAGAAGAATGAGCTCGGAGTCGGGGAAGTCAATGAAA 957
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAAA-AAAATTAGAGGAACCATTAAGAAGAATGAGCTCGGAGTCGGGGAAGTCAATGAAA 957
Query 958 GAAGTGTCCATTTCATTAAAGAACATGACAATATCATCTTCTTTTGATATCCATGTAGTA 1017
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||
Sbjct 958 GAAGTGTCCATTTCATTAAAGAAAATGACAAAATCATCTTCTTTTGATATCCATGTCGTA 1017
Query 1018 AACTCACAATCTGCATGCAAGACTCTTTCCACTTTACTTAAATCAGGCATCTTAAACGAT 1077
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 1018 AACTCACAATCTGCCTGCAAAACTCTTTCAACTTTACTTAAATCAGGCATCTTAAAAGAT 1077
Query 1078 GTTGAGCCTCTACAAATGATCTCATTAATGACGACAGTTTCTCTGCTCATTGACATTGTA 1137
|||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 1078 GTTGAGCCTCTACAAATGATCTCATTGATGACGACAGTCTCTCTGTTCATTGACATTGTT 1137
Query 1138 AACTTAACCGAAAAGATCTCAGAATCCGTACATGAGCTTGCATCCGCAGCAAAATTTAAG 1197
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AATTTAACCGAAAAGATCTCAGAATCCGTACATGAGCTTGCATCCGCAGCAAAATTTAAG 1197
Query 1198 AACAAGAAGAAGCCGTCTAAGTC-GAATTCGGGAAGCATTGGTCAAGCCATGCCAAATAA 1256
||||||| |||||| || | ||| || ||||||||| |||||||| | ||||||||||||
Sbjct 1198 AACAAGACGAAGCCATCCAGGTCAGA-TTCGGGAAGGATTGGTCATGACATGCCAAATAA 1256
Query 1257 ATCTCATGATGATGATGATC---AT-G--TTGTTACAATTTTAGGTGACGTTGACACATC 1310
||||||||||||| || ||| || | |||||||||||||| |||| |||||||||||
Sbjct 1257 ATCTCATGATGATCATCATCGTCATCGCGTTGTTACAATTTTATGTGATGTTGACACATC 1316
Query 1311 AAACAATGTTGATCAATCGCAATCGCATGGAGAGATCTCAGTGGACTCATGTCATCATGT 1370
||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||
Sbjct 1317 AAACAATGTTGATCAATCGCA-T-G---G-AGAGATCTCAGTGGACTCATGTCATCATGT 1370
Query 1371 CACCATAAAGATTAACGATGATGATTCGATCCATGACAAAA-ATGAAGATGGTGATATAC 1429
| | ||||||||| |||||||||||||||| ||||| |||| ||||||||||||||||||
Sbjct 1371 CGCGATAAAGATTGACGATGATGATTCGATTCATGA-AAAACATGAAGATGGTGATATAC 1429
Query 1430 ATGTACATACAAATCGTGTATCATGTGATCACACTAATGCTAGTGATCTTTTAGATAGTG 1489
|||||||||| | ||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1430 ATGTACATACGAGTCGTGTATCATGTGAGCACACTAATGCTAGTGATCTTTTAGTTAGTG 1489
Query 1490 GCGTTAAAAAGAATTAG 1506
|||||||||||||||||
Sbjct 1490 GCGTTAAAAAGAATTAG 1506
> Ahg919587 jgi|Araly1|919587|scaffold_100868.1
Length=1514
Score = 1458 bits (789), Expect = 0.0
Identities = 1172/1351 (87%), Gaps = 50/1351 (4%)
Strand=Plus/Plus
Query 1 ATGgagaaagtgagagagattgtgagagaagggaggagagtaggtaaagaagatccgaga 60
|||||||||||||||||||| ||||||||||||| |||||||| || ||||| ||||||
Sbjct 22 ATGGAGAAAGTGAGAGAGATAGTGAGAGAAGGGATAAGAGTAGGGAATGAAGACCCGAGA 81
Query 61 agagTAGTGCATGCTTTCAAAGTGGGACTTGCTCTTGCTTTGGTCTCTTCCTTCTATTAT 120
||| || | |||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 82 AGAATAATTCATGCTTTCAAAGTGGGACTTGCTCTTGTTTTCGTCTCTTCCTTCTATTAT 141
Query 121 TATCAACC--TC--T-C--T-A-CGACAACTTCGGTGTCAATGCAATGTGGGCTGTCATG 171
|| ||||| || | | | | ||| |||||||| |||||||||||||||||||||||
Sbjct 142 TACCAACCTTTCGGTCCTTTCACCGATTACTTCGGTATCAATGCAATGTGGGCTGTCATG 201
Query 172 ACCGTCGTTGTTGTTTTTGAATTCTCTGTAGGGGCCACACTTGGGAAAGGACTAAATAGA 231
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 202 ACCGTCGTTGTTGTCTTTGAATTCTCCGTAGGGGCCACACTTGGGAAAGGACTAAATAGA 261
Query 232 GCAGTGGCAACATTGGTAGCAGGAGGACTAGGGATTGGAGCTCATC-ACCTAGCAAGTTT 290
| |||||||||||| ||||||||||||||||| ||||||||||||| || ||||||| ||
Sbjct 262 GGAGTGGCAACATTAGTAGCAGGAGGACTAGGAATTGGAGCTCATCGAC-TAGCAAGATT 320
Query 291 GTCGGGTCCAACAGTAGAACCCATTCTTCTTGC-CATCTTTGTCTTTGTCCTAGCTGCAT 349
||||||| ||||||| ||||| |||||| ||| ||| || |||||||| | |||||| |
Sbjct 321 GTCGGGTGCAACAGTGGAACCTATTCTT-TTGGTCATGTTGGTCTTTGTGCAAGCTGCCT 379
Query 350 TGTCGACGTTCGTGAGGTTCTTCCCGCGGGTGAAGGCAAGATAT-GATTATGGGGTATTG 408
|||||||||| |||||||||||||| |||||||| ||| || | ||||||||| |||||
Sbjct 380 TGTCGACGTTTGTGAGGTTCTTCCCATGGGTGAAGACAAAAT-TCGATTATGGGATATTG 438
Query 409 ATATTCATATTGACGTTCGCACTGATATCAGTT-TCGGGGTTTAGAGAGGACGAGATATT 467
|||||||||||||||||||| ||||||| ||| |||||||||||||| || |||||| |
Sbjct 439 ATATTCATATTGACGTTCGCGTTGATATC-GTTGTCGGGGTTTAGAGACGAAGAGATAAT 497
Query 468 GGATTTGGC-GCATAAG-AGACTATCGACAGTGATAATGGGAGGAGTTAGTTGCGTGCTT 525
||||||||| | | ||| ||||| || |||||| | || |||||||| |||||||| |||
Sbjct 498 GGATTTGGCAG-A-AAGCAGACTTTCAACAGTGGTGATTGGAGGAGTCAGTTGCGTCCTT 555
Query 526 ATCTCTATCTTTGTCTGCCCTGTTTGGGCAGGACAAGACCTTCATTCTCTCCTTGCCTCC 585
||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 556 ATCTCTATCTTTGTCTGTCCTGTTTGGGCTGGACAAGATCTTCATTCTCTCCTTGCCTCT 615
Query 586 AACTTTGACACTCTCTCCCACTTCCTTCAAGAATTTGGGGACGAATATTTTGAAGCGACA 645
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 616 AACTTTGACACACTCTCCCACTTCCTTCAAGATTTTGGGGACGAATATTTTGAAGCGAGT 675
Query 646 GAGGATGGGGAC-ATCAAAGAAGTGGAGAAGAGGAGAAGGAATCTTGAGA-GATATAAAA 703
|| ||||||||| || |||| ||||||||||||| || |||||||| || |||| ||||
Sbjct 676 GAAGATGGGGACTAT-AAAGTGGTGGAGAAGAGGAAAAAGAATCTTG-GAAGATACAAAA 733
Query 704 GTGTTCTCAACTCAAAAAGCAATGAAGAAGCTTTGGCTAATTTTGCAAAATGGGAACCGC 763
| ||||| |||| |||||| |||||||||||||||||||||| ||| ||||||||||||
Sbjct 734 GGGTTCTTGACTCCAAAAGCGATGAAGAAGCTTTGGCTAATTTCGCAGAATGGGAACCGC 793
Query 764 -GTCATGGCCAATTTAGATTTCGGCATCCATGGAGACAATATCTTGCCGTGGGTGCATTA 822
| ||||| |||||||| ||| |||||||||||| ||||||| ||||||| || ||||||
Sbjct 794 CG-CATGGACAATTTAGGTTTAGGCATCCATGGAAACAATATGTTGCCGTTGGCGCATTA 852
Query 823 CTCCGGCAATCTGCTTACCGAATTGATGCCTTGAATTCAAACATCAACTCAGATATGCAG 882
|||||||| | ||| ||| | |||||||||||||||||| |||||||||||||| | |||
Sbjct 853 CTCCGGCAGTGTGCCTACAGGATTGATGCCTTGAATTCATACATCAACTCAGATTTTCAG 912
Query 883 ATCCCAATGGACATTAAAAAGAAAATAGAGGA-ACCATTAAGAAGAATGAGCTCGGAGTC 941
|||||||||||||| ||||||||| |||| | |||||||||||||||||||||||||||
Sbjct 913 ATCCCAATGGACATAAAAAAGAAATTAGAA-ACACCATTAAGAAGAATGAGCTCGGAGTC 971
Query 942 GGGGAAGTCAATGAAAGAAGTGTCCATTTCATTAAAGAACATGACAATATCATCTTCTTT 1001
||| || |||||||||||| |||| |||||||||||||| |||| || |||||||||||
Sbjct 972 GGGAAAATCAATGAAAGAAATGTCGATTTCATTAAAGAAAATGATAAAATCATCTTCTTC 1031
Query 1002 TGATATCCATGTAGT-AAACTCACAATCTGCATGCAA-GACTCTTTCCACTTTACTTAAA 1059
|||||||||||| | ||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 1032 TGATATCCATGTC-TCAAACTCACAATCTGCATGCAAAG-CTCTTTCTACTTTACTTAAA 1089
Query 1060 TCAGGCATCTTAAACGATGTTGAGCCTCTACAAATGATCTCATTAATGACGACAGTTTCT 1119
||||||||||| ||||||||||||||||| |||||||| ||||| | ||||| || ||
Sbjct 1090 TCAGGCATCTTGAACGATGTTGAGCCTCTTCAAATGATTTCATTGCTCACGACTGTCTCC 1149
Query 1120 CTGCTCATTGACATTGTAAACTTAACCGAAAAGATCTCAGAATCCGTACATGAGCTTGCA 1179
|| ||||| || ||||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1150 CTACTCATAGATATTGTTAATTTAACCGAAAAAATCTCAGAATCCGTACACGAGCTTGCA 1209
Query 1180 TCCGCAGCAAAATTTAAGAACAAGAAGAAGCCG----T-CTA----AG---TCGAATTCG 1227
||||| |||| |||||||||||||| || |||| | ||| || ||| ||||
Sbjct 1210 TCCGCTGCAAGATTTAAGAACAAGATGAGGCCGACGGTGCTATTTGAGAAGTCGGATTCT 1269
Query 1228 GGAAGCATTGGTCAAGCCATGCCAAATA-AATCTCATGATGATGATGATCATGTTGTTAC 1286
||||| ||||||| ||||||||| || |||||||||| | |||||||||||||| ||
Sbjct 1270 GGAAGAATTGGTCGTGCCATGCCAG-TAGAATCTCATGA--A-GATGATCATGTTGTCAC 1325
Query 1287 AATTTTAGGTGACGTTGACACATCAAACAAT 1317
| ||||| ||||||||| | ||||||||||
Sbjct 1326 AGTTTTACATGACGTTGATAAATCAAACAAT 1356
> Ahg344480 jgi|Araly1|344480|fgenesh1_pg.C_scaffold_4000822
Length=1458
Score = 885 bits (479), Expect = 0.0
Identities = 988/1230 (80%), Gaps = 49/1230 (4%)
Strand=Plus/Plus
Query 1 ATGgagaaagtgagagagattgtgagagaagggaggagagtagg-taaagaagatccgag 59
||||| ||||||||||||||||||||||||||||| ||||| || |||||||| |||||
Sbjct 1 ATGGAAAAAGTGAGAGAGATTGTGAGAGAAGGGAGAAGAGT-GGCAAAAGAAGACCCGAG 59
Query 60 aagagTAGTGCA-TGCTTTCAAAGTGGGACTTGCTCTTGCTTTGGTCTCTTCCTTCTATT 118
|||||||| || | | ||||||||||| || | |||||| || ||||||||||||||||
Sbjct 60 GAGAGTAGTTCACT-CGTTCAAAGTGGGTCTGGTTCTTGCCTTAGTCTCTTCCTTCTATT 118
Query 119 ATTATCAACCTCTCTACGACAACTTCGGTGTCAATGCAATGTGGGCTGTCATGACCGTCG 178
|||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||| || |
Sbjct 119 ATTACCAACCTCTCTACGACAGCTTCGGTGTTAATGCAATGTGGGCTGTTATGACGGTTG 178
Query 179 TTGTTGTTTTTGAATTCTCTGTAGGGGCCACACTTGGGAAAGGACTAAATAGAGCAGTGG 238
|||| || || || |||||||| || ||||| || || ||||| || || |||| | ||
Sbjct 179 TTGTCGTCTTCGAGTTCTCTGTTGGAGCCACGCTCGGTAAAGGTCTTAACAGAGTGGCGG 238
Query 239 CAACATTGGTAGCAGGAGGACTAGGGATTGGAGCTCATCACCTAGCAAGTTTGTCGGGTC 298
||||| | | || || ||||| || || |||||||||||||| || || |||| || |
Sbjct 239 CAACACTATTTGCTGGGGGACTTGGAATCGGAGCTCATCACCTGGCTAGCATGTCTGGCC 298
Query 299 CAACAGTAGAACCCATTCTTCTTGCCATCTTTGTCTTTGTCCTAGCTGCATTGTCGACGT 358
|||||| ||||||||||||||| || |||||||||||||| | |||||| ||||||||||
Sbjct 299 CAACAGGAGAACCCATTCTTCTCGCAATCTTTGTCTTTGTACAAGCTGCCTTGTCGACGT 358
Query 359 TCGTGAGGTTCTTCCCGCGGGTGAAGGCAAGATATGATTATGGGGTATTGATATTCATAT 418
| |||||||||||||||||||||||||| ||||| ||||| | | ||||| ||||||
Sbjct 359 TTGTGAGGTTCTTCCCGCGGGTGAAGGCGAGATACGATTACAGCCTGTTGATTTTCATAC 418
Query 419 TGACGTTCGCACTGATATCAGTTTCGGGGTTTAGAGAGGACGAGATATTG-GAT-TTGGC 476
| || || || |||||||||| ||||| || |||||||| | | ||| || || |
Sbjct 419 TCACCTTTGCGTTGATATCAGTGTCGGGATTCAGAGAGGA-G-CAGGTTGTAATGCTGAC 476
Query 477 GCATAAGAGACTATCGACAGTGATAATGGGAGGAGTTAGTTGCGTGCTTATCTCTATCTT 536
|||||||||| | || |||||||| || |||||| | ||||| || |||||||| |||||
Sbjct 477 GCATAAGAGAATCTCCACAGTGATCATCGGAGGACTAAGTTGTGTCCTTATCTCCATCTT 536
Query 537 TGTCTGCCCTGTTTGGGCAGGACAAGACCTTCATTCTCTCCTTGCCTCCAACTTTGACAC 596
||||||||| || ||||| || ||||| |||||||| ||||| ||||| |||||||| |
Sbjct 537 TGTCTGCCCCGTCTGGGCCGGCCAAGATCTTCATTCACTCCTAGCCTCTAACTTTGAGAA 596
Query 597 TCTCTCCCACTTCCTT-CAAGAATTTGGGGACGAATATTTTGAAGCGACAGAGGATGGGG 655
|||| || || ||| ||| ||||||||| |||||| ||||| | ||| ||| |
Sbjct 597 ACTCT-CCTTTTTCTTGTTAGATTTTGGGGACAAATATTGTGAAGTGGTAGAAAATGATG 655
Query 656 ACATCAAAGAAGTGGA-GAA-GAGGAGAAGGAATCTTGAGAGA-TATAAAAGTGTTCTCA 712
||| |||||| || || || || | |||| || |||| | | ||||||||||||||||
Sbjct 656 ACACCAAAGAGGTTGACAAACGA-AAAAAGG-ATTTTGACA-ACTATAAAAGTGTTCTCA 712
Query 713 ACTCAAAAAGCAATGAAGAAGCTTTGGCTAATTTTGCAAAATGGGAACC-GCGTCATGGC 771
|||||||||||||||||||| |||||||||||||||| ||||||||||| | |||| |||
Sbjct 713 ACTCAAAAAGCAATGAAGAATCTTTGGCTAATTTTGCGAAATGGGAACCTG-GTCACGGC 771
Query 772 CAATTTAGATTTCGGCATCCATGGAGACAATATCTTGCCGTGGGTGCATTACTCCGGCAA 831
||||| ||||| |||||||| |||| ||||||||| || || |||| |||| |||| |||
Sbjct 772 CAATTCAGATTCCGGCATCCTTGGAAACAATATCTAGCTGTCGGTGAATTAATCCGACAA 831
Query 832 TCTGCTTACCGAATTGATGCCTTGAATTCAA-ACATC--AACT-CAGATA-TGCAGATCC 886
| ||||||| ||||| || || |||||||| | ||| || | |||||| | || |
Sbjct 832 TGTGCTTACAGAATTCATACCCTGAATTCATCATATCTTAA-TGCAGATAATA-AGGTGT 889
Query 887 CAATGGACATTAAAAAGAAAATAG-AGGAACCATTAAGAAGAATGAGCTCGGAGTCGGGG 945
|||| || |||||||||||| | | || ||||||| ||||||||||| | |||||| ||
Sbjct 890 CAATTGATATTAAAAAGAAACTTGGAG-AACCATTGAGAAGAATGAGTTTGGAGTCTGGC 948
Query 946 AA-GTCAATGAAAGAAGTGTCCATTTCATTAAAGAACATGAC-AATATCATCTTCTTTTG 1003
|| | | ||||||||| |||| |||||||| ||||| ||||| || | ||||||||| ||
Sbjct 949 AAAG-CGATGAAAGAAATGTCAATTTCATTGAAGAAAATGACCAA-ACCATCTTCTTCTG 1006
Query 1004 ATATCCATGTAGTAAACTCACA-ATCTGCATGCAAGA-CTCTTTCCA-CTTTACTTAAAT 1060
|| | ||||| |||| || | |||||| | ||| | | || ||| ||| |||||| |
Sbjct 1007 ATCTTCATGTCCAAAACGCA-AGATCTGCCTCCAA-ATCACTCACCAACTT-ACTTAATT 1063
Query 1061 CAGGCATCTT-AAACGATGTTGAGCCTCTACAAATGATCTCA-TTAATGAC-GAC-AGTT 1116
|||||||||| ||| || |||||||| ||| || || ||||| || |||| | | | ||
Sbjct 1064 CAGGCATCTTGAAA-GAAGTTGAGCCACTAGAATTGGTCTCACTTC-TGACCG-CGA-TT 1119
Query 1117 TCTCT-GCTCATTGACATTGTAAACTTAACCGA-AAAGATCTCAGAATCCGTACATGAGC 1174
|| || |||||| || ||| ||||| | || || ||| |||| ||| || ||||||| |
Sbjct 1120 TC-CTTGCTCATCGATATTATAAACCTGACAGAGAAA-ATCTTGGAAGCCCTACATGAAC 1177
Query 1175 TTGCATCCGCAGCAAAATTTAAGAACAAGA 1204
| |||||||| |||||||||||||||||||
Sbjct 1178 TAGCATCCGCTGCAAAATTTAAGAACAAGA 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56373562600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5