BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08450.1
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919589 jgi|Araly1|919589|scaffold_100870.1 2132 0.0
Ahg919422 jgi|Araly1|919422|scaffold_100703.1 627 9e-179
> Ahg919589 jgi|Araly1|919589|scaffold_100870.1
Length=1312
Score = 2132 bits (1154), Expect = 0.0
Identities = 1253/1301 (96%), Gaps = 5/1301 (0%)
Strand=Plus/Plus
Query 29 AAAAATGGGATTACCTCAAAATAAGCTCAGTTTTTTCTGCTTCTTCTTCCTCGTCTCTGT 88
|||||||||||||||||||||||||||||||||| ||||| | |||| ||| |||||||
Sbjct 17 AAAAATGGGATTACCTCAAAATAAGCTCAGTTTTCTCTGC--C-TCTTTCTCTTCTCTGT 73
Query 89 ACTAACTCTTGCCCCATTGGCTTTCTCCGAGATCTTCTTAGAGGAGCATTTCGAAGGTGG 148
|| ||| |||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 74 GCTCACTATTGCTCCGTTGGCTTTCTCCGAGATCTTCTTAGAAGAGCATTTCGAAGGTGG 133
Query 149 ATGGAAAAGTAGGTGGGTCTTGTCTGATTGGAAAAGAAACGAAGGCAAAGCTGGAACCTT 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 ATGGAAAAGTAGGTGGGTCTTGTCTGATTGGAAAAGAAACGAAGGCAAAGCTGGAACCTT 193
Query 209 TAAGCACACTGCCGGTAAATGGCCCGGCGATCCTGACAATAAAGGTATTCAGACTTATAA 268
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 194 TAAGCACACTGCCGGTAAATGGCCCGGCGATCCTGACGATAAAGGTATTCAGACCTATAA 253
Query 269 TGATGCCAAGCATTATGCGATTTCTGCAAAGATTCCTGAGTTTAGCAACAAAAACCGGAC 328
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 254 TGATGCCAAGCATTATGCGATCTCTGCAAAGATTCCTGAGTTTAGCAACAAAAACCGGAC 313
Query 329 TCTTGTTGTCCAGTACTCAGTCAAGATTGAACAAGACATTGAATGTGGTGGTGCTTACAT 388
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 314 TCTTGTTGTCCAGTACTCAGTCAAGATTGAACAAGATATAGAATGTGGTGGTGCTTACAT 373
Query 389 TAAGCTCCTGTCTGGCTATGTTAACCAGAAGCAGTTTGGTGGTGATACTCCATACAGTCT 448
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 374 CAAGCTCCTCTCTGGCTATGTTAACCAGAAGCAGTTTGGTGGTGATACTCCTTACAGTCT 433
Query 449 AATGTTTGGACCAGATATATGCGGAACACAGACGAAGAAGCTTCATGTTATAGTTTCATA 508
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 434 AATGTTTGGACCAGATATATGCGGAACACAGACGAAGAAACTTCATGTTATACTTTCATA 493
Query 509 TCAGGGACAGAATTATCCAATCAAAAAGGATTTGCAATGTGAAACAGACAAATTAAATCA 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TCAGGGACAGAATTATCCAATCAAAAAGGATTTGCAATGTGAAACAGACAAATTAAATCA 553
Query 569 TTTCTACACATTTATTCTGCGTCCTGACGCTTCTTACAGCGTTCTGGTGGATAATAAAGA 628
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 554 TTTCTACACATTTATTCTGCGGCCTGACGCTTCTTACAGCGTTCTGGTGGACAATAAAGA 613
Query 629 GAGAGAATTTGGCAGTATGTACACAGACTGGGACATCCTTCCTCCAAGGAAGATCAAGGT 688
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 614 GAGAGAATTTGGTAGTATGTACACAGACTGGGACATCCTTCCTCCAAGGAAGATAAAGGT 673
Query 689 CAAGAATGCAAAGAAGCCAGAGGACTGGGATGATAGAGAGTACATCGATGACCCCAACGA 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 CAAGAATGCAAAGAAGCCAGAGGACTGGGATGATAGAGAGTACATCGATGACCCCAACGA 733
Query 749 TGTCAAACCCGAGGGTTTTGATTCTATTCCACGTGAAATTCCAGATCGTAAAGCTAAAGA 808
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 734 TGTCAAACCCGAGGGTTTTGATTCTATTCCGCGTGAAATTCCAGATCGTAAAGCTAAAGA 793
Query 809 GCCCGAGGACTGGGACGAGGAAGAAAATGGTCTCTGGGAACCTCCAAAGATCCCAAATTC 868
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 794 GCCCGAGGACTGGGACGAGGAAGAAAACGGTCTCTGGGAACCTCCAAAGATCCCAAATCC 853
Query 869 TGCGTACAAAGGTCCTTGGAAAGCAAAGAGAATCAAGAACCCGAACTACAAGGGAAAATG 928
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 854 TGCATACAAAGGTCCTTGGAAAGCAAAGAAAATCAAGAACCCGAACTACAAGGGAAAATG 913
Query 929 GAAGAACCCATGGATAGATAATCCAGAATTTGAAGATGATCCAGATCTTTACGTTCTGAA 988
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 GAAAAACCCATGGATAGATAATCCAGAATTTGAAGATGATCCAGATCTTTACGTTCTGAA 973
Query 989 GTCTATCAAATATGCAGGCATTGAAGTATGGCAGGTGAAGGCTGGCTCAATCTTTGACAA 1048
| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 974 GCCTATAAAATATGCAGGCATTGAAGTATGGCAGGTGAAGGCTGGCTCTATCTTTGACAA 1033
Query 1049 TATATTGATCTGCGATGACCCGGCATATGCAAGAAGCATCGTGGATGACTATTTTGCCCA 1108
||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1034 TATCTTGATCTGCGATGACCCGGAATATGCTAGAAGCATCGTGGATGACTATTTTGCCCA 1093
Query 1109 ACACAGGGAGTCTGAGAAGGAGTTATTTGCGGAAGCAGAGAAAGAAAGAAAAGCTAGAGA 1168
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1094 GCACAGGGAGTCTGAGAAGGAGTTATTTGCGGAAGCTGAGAAAGAAAGAAAAGCTAGAGA 1153
Query 1169 AGATGAGGAAGCTCGGATAGCACGGGAAGAAGGTGAACGCAGGCGGAAAGAAAGGGACCA 1228
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1154 AGATGAGGAAGCTCGGAAAGCACGGGAAGAAGGTGAACGCAGGCGGAAGGAAAGGGACCA 1213
Query 1229 CCGGTATGGAGACAGGAGGAGGCGTTACAAACGGCCGAATCCACGTGATTATATGGATGA 1288
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1214 CCGGTATGGAGACAGGAGGAGGCGTTACAAACGACCGAATCCACGTGATTACATGGATGA 1273
Query 1289 TTACCATGACGAGCTATGAGGCGCAGAGTGGTGGGCATTTG 1329
||||||||||||||| | |||||||| |||||||||||||
Sbjct 1274 TTACCATGACGAGCTGTAAGGCGCAG--TGGTGGGCATTTG 1312
> Ahg919422 jgi|Araly1|919422|scaffold_100703.1
Length=2461
Score = 627 bits (339), Expect = 9e-179
Identities = 472/530 (89%), Gaps = 34/530 (6%)
Strand=Plus/Plus
Query 830 AGAAAATGGTCTCTGGGAACCTCCAAAGATCCCAAATTCTGCGTACAAAGGTCCTTGGAA 889
|||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1936 AGAAAACGGTCTCTGGGAACCTCCAAAGATCCCAAATCCTGCGTTCAAAGGTCCTTGGAA 1995
Query 890 AGCAAAGAGAATCAAGAACCCGAACTACAAGGGAAAATGGAAGAACCCATGGATAGATAA 949
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1996 AGC-AA-AGAATCAAGAACCCGAACTACAAGGGAAAATGGAAGAACCCATGGATAGATAA 2053
Query 950 TCCAGAATTTGAAGATGATCCAGATCTTTACGTTCTGAAGTCTATCAAATATGCAGGCAT 1009
|||||||||||| ||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 2054 TCCAGAATTTGAGGATGATCCAGATCTTTACGTTCTGAAGCCGATAAAATATGCAGGCAT 2113
Query 1010 TGAAGTATGGCAGGTGAAGGCTGGCTCAATCTTTGACAATATATTGATCTGCGATGACCC 1069
||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 2114 TGAAGTATGGCAGGTGAAGGCTGGCTCTATCTTTGACAATATCTTGATCTGTGATGACCC 2173
Query 1070 GGCATATGCAAGAAGCATCGTGGATGACTATTTTGCCCAACACAGGGAGTCTGAGAAGGA 1129
|| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2174 GGAATATGCTAGAAGCATCGTGGATGACTATTTTGCCCAGCACAGGGAGTCTGAGAAGGA 2233
Query 1130 GTTATTTGCGGAAGC--AG--AG--AA---AGA-AAGA--A---A--AGC-T----AGA- 1166
|||||||||||| || || || || ||| |||| | | ||| | | |
Sbjct 2234 GTTATTTGCGGAGGCTGAGAAAGAAAAGCTAGAGAAGATGAGTTACGAGCATGGCCATAC 2293
Query 1167 GAA--GATG-----AGGAAGCTCGGATAGCACGGGAAGAAGGTGAACGCAGGCGGAAAGA 1219
|| |||| |||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 2294 AAATCGATGTTTACAGGAAGCTCGGAAAGCACGGGAAGAAGGTGAACGCAGGCGGAAGGA 2353
Query 1220 AAGGGACCACCGGTATGGAGACAGGAGGAGGCGTTACAAACGGCCGAATCCACGTGATTA 1279
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2354 AAGGGACCACCGGTATGGAGACAGGAGGAGGCGTTACAAACGACCGAATCCACGTGATTA 2413
Query 1280 TATGGATGATTACCATGACGAGCTATGAGGCGCAGAGTGGTGGGCATTTG 1329
||||||||||||||||| ||||| | |||||||| |||||| ||||||
Sbjct 2414 CATGGATGATTACCATGATGAGCTGTAAGGCGCAG--TGGTGGACATTTG 2461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55764118680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5