BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08460.1
Length=1369
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470906 jgi|Araly1|470906|fgenesh2_kg.1__860__AT1G08460.1 1954 0.0
> Ahg470906 jgi|Araly1|470906|fgenesh2_kg.1__860__AT1G08460.1
Length=1335
Score = 1954 bits (1058), Expect = 0.0
Identities = 1238/1324 (94%), Gaps = 16/1324 (1%)
Strand=Plus/Plus
Query 9 CCTCCATTATTACACCACCGTTGGCCTCCGACGACGGCTCAAGCCTATCTTCGTCGCCGG 68
||||||| || ||||||||| ||||||||||||||| | ||||| ||||| |||||||||
Sbjct 1 CCTCCATCATCACACCACCGATGGCCTCCGACGACGTCCCAAGCGTATCTCCGTCGCCGG 60
Query 69 CTTCTCCGATGGTTACCAA-TCGCGTAGACGTCTTCTGGCACGAAGGAATGCTCCGACAC 127
|||||||||||| || || ||| || |||||||||||||||||||||||||||||||||
Sbjct 61 CTTCTCCGATGGCTA-AAAGTCGTGTTGACGTCTTCTGGCACGAAGGAATGCTCCGACAC 119
Query 128 GACGCCGTAGAAGGCGTCTTCGACACTGGATACGACCCTGGATTCCTCGACGTATTGGAG 187
|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 120 GACGCCGTAGAAGGCGTCTTCGACACCGGACACGACCCAGGATTCCTCGACGTATTGGAG 179
Query 188 AAGCACCCGGAGAACGCCGATCGCGTCAGGAACATGCTTTCGATTCTCCGACGCGGTCCC 247
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 180 AAGCACCCGGAGAACGCCGATCGCGTCAGGAACATGCTTTCGATACTCCGACGAGGGCCC 239
Query 248 ATCGCTCCTCATGTCAATTGGTTTACCGGTCTTCCAGCAATCGTTTCGGAGCTTCTAATG 307
|||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 240 ATCGCTCCCCATGTCAATTGGTTTACCGGCCGTCCAGCAATCGTTTCGGAGCTTCTAATG 299
Query 308 TTTCACACTTCAGAGTACATTGA-GAAGCTAGTGGAGGCAGATAAATCAGGAGAAAGGTG 366
|||||||||||||| || ||||| | || ||||||||||||||||||||||||||||| |
Sbjct 300 TTTCACACTTCAGAATATATTGACG-AGTTAGTGGAGGCAGATAAATCAGGAGAAAGGCG 358
Query 367 TGAAATTGCCGCAGGTACTTTCATGAGCCCAGGCTCGTGGGAAGCTGCTCTTCTTGCAGC 426
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGAAATTGCTGCTGGTACTTTCATGAGCCCAGGCTCGTGGGAAGCTGCTCTTCTTGCAGC 418
Query 427 TGGAACAACTCTTTCAGCAATGCAACATATTCTTGATTGCCATGGGAAAA-TTGCATATG 485
|||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 419 TGGAACAACTCTATCAGCAATGCAACATATTCTTGATTGCCAT-GGAAAAGTTGCATATG 477
Query 486 CTCTGGTACGCCCACCAGGTCACCACTCACAGCCTACTCAGGCTGATGGGTATTGCTTCC 545
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 478 CTCTGGTACGCCCACCAGGCCACCACTCACAGCCTTCTCAGGCTGATGGGTATTGCTTCC 537
Query 546 TCAACAACGCTGCTCTTGCTGTCAAGCTGGCATTGAATTCGGGTTCTTGTTCCCGAGTTG 605
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCAACAATGCGGCTCTTGCTGTCAAGCTGGCATTGAATTCGGGTTCTTGTTCCCGAGTTG 597
Query 606 CGGTTATTGACATCGATGTACATTATGGAAATGGCACAGCTGAAGGGTTTTA-TACATCT 664
| ||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 598 CCGTTATTGACATCGATGTACATTACGGAAATGGCACAGCTGAAGGGTTTTACT-CATCT 656
Query 665 GATAAGGTTCTTACGGTGTCACTCCATATGAACCATGGATCATGGGGATCGTCCCACCCG 724
||| |||||||||||||||| || |||||||||||||||||||||||||| || ||||||
Sbjct 657 GATGAGGTTCTTACGGTGTCCCTTCATATGAACCATGGATCATGGGGATCATCTCACCCG 716
Query 725 CAGAAAGGGTCGATTGATGAACTTGGTGAAGACGTGGGATTGGGTTACAATCTGAATGTC 784
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 717 CAGAAAGGGTCGATTGATGAAATTGGTGAAGACCTGGGATTGGGTTACAATCTGAATGTC 776
Query 785 CCTTTACCGAATGGCACGGGTGACCGGGGATATGAATATGCCATGAATGAGCTGGTGGTT 844
|||||||| ||||||||||||||||| || |||||||||||||||| |||||||||||||
Sbjct 777 CCTTTACCAAATGGCACGGGTGACCGAGGCTATGAATATGCCATGACTGAGCTGGTGGTT 836
Query 845 CCTGCAGTTAGAAGGTTTGGACCCGATATGGTTGTTCTCGTTGTTGGTCAAGACTCTAGC 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CCTGCAGTTAGAAGGTTTGGACCCGATATGGTTGTTCTCGTTGTTGGTCAAGACTCTAGC 896
Query 905 ---GCTTTTGATCCAAACGGGAGACAAAGCCTGACAATGAATGGATACAGAAGGATTGGG 961
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TATGCGTTTGATCCAAACGGGAGACAAAGCCTGACAATGAATGGATACAGAAGGATTGGT 956
Query 962 CAGATAATGAGGGGAGTTGCAGAGGAGCACAGCCATGGAAGGTTGCTTATGGTGCAAGAA 1021
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 957 CAAATAATGAGGGGAGTTGCTGAGGAGCACAGCCATGGAAGGTTGCTTATGGTGCAAGAA 1016
Query 1022 GGCGGGTATCATGTAACATATGCAGCTTACTGCCTCCACGCCATGCTCGAAGGGGTGCTG 1081
||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 1017 GGCGGTTATCATGTAACATATGCAGCGTACTGCCTGCACGCCATGCTCGAAGGCGTGCTG 1076
Query 1082 AAGATTCCAGAACCGCATCTATCTGATCCGATCGCTTATTATCCCGAAGAAGAAGCTAAT 1141
||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| |
Sbjct 1077 AAGATTCCAGAACCGCATCTATCAGATCCGATTGCTTATTATCCTGAAGAAGAAGCTATT 1136
Query 1142 GCTGTTGCTGCTGTGGAGTCAATCAAAACATATCACACCGAATTTGTTCCATTTCTCAGA 1201
|||||||| |||||||| |||||||||| ||| ||| ||||||||||| ||| |||||||
Sbjct 1137 GCTGTTGCAGCTGTGGAATCAATCAAAAGATACCACTCCGAATTTGTTACATCTCTCAGA 1196
Query 1202 GGAACTTGAAAATGGGACGTATGAATGAGTTTATGTTATTCCTCGTTGTCTTGTGACCTT 1261
|||||||||| || | ||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 1197 GGAACTTGAAC-TGTGTCGTATGAATGACTTTATAT-ATTCCTCGTTGTCTTGTGACCTG 1254
Query 1262 TTGGAACACAGA-TCCAAATCAATCAGGTCAAACC-GTATATATCAAAATACTTGTTGAT 1319
|||||||||| | |||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1255 TTGGAACACA-ACTCCAAATCAATCAGGTCAAACCCGCATATATCAAAATACTTGTTGAT 1313
Query 1320 CAAA 1323
||||
Sbjct 1314 CAAA 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51237200448
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5