BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08465.1
Length=1174
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470907 jgi|Araly1|470907|fgenesh2_kg.1__861__AT1G08465.1 1441 0.0
> Ahg470907 jgi|Araly1|470907|fgenesh2_kg.1__861__AT1G08465.1
Length=992
Score = 1441 bits (780), Expect = 0.0
Identities = 910/968 (94%), Gaps = 28/968 (3%)
Strand=Plus/Plus
Query 3 ATAAACCACATTAGTCTTTTCAGATTTTTTGTACACTTCCTTCATCCCCCACCCAtctct 62
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATAAACCACATTAGTCTTTTCAGATTTTTTGTACACTTCCTTCACCCCCCACCCATCTCT 60
Query 63 ctctctctctctcatccttcctctttcttctttgcttgcccttttctttttattttattc 122
||||||||| ||| |||| ||||||||||||||| ||||||||||| |||||||||||||
Sbjct 61 CTCTCTCTC-CTCCTCCTCCCTCTTTCTTCTTTGTTTGCCCTTTTC-TTTTATTTTATTC 118
Query 123 ttcCAAAATCAAATAGTTCCTTCTTTGATCTCATTGGGATAACTAAAAGTTTCAAGAAGA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 119 TTCCAAAATCAAATAGTTCCTTCTTTGATCTCATTGGGATAACTAAAAGTTTCAAGACGA 178
Query 183 GAAACATATCATTGAAGAGAGAACCCACACaaaaaaaaaTGTCTGTAGATTTCTCATCTG 242
|||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 179 GAAACATATCGTTGAAGAGAGAACCCACAC--AAAAAAATGTCTGTAGATTTATCATCTG 236
Query 243 AGCGTGTTTGCTATGTCCACTGCAGCTTCTGCACCACGATTTTAGCGGTAAGTGTACCAT 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AGCGTGTTTGCTATGTCCACTGCAGCTTCTGCACCACGATTTTAGCGGTAAGTGTACCAT 296
Query 303 ACGCAAGTTTGTTCACACTTGTGACGGTGAGATGTGGCCATTGTACCAATTTGCTATCCC 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 297 ACGCAAGTTTGTTCACACTTGTGACGGTGAGATGTGGCCATTGTACCAATTTGCTCTCCC 356
Query 363 TCAACATTGGAGTTTCACTTCATCAAACCTCAGCTCCTCCCATTCACCAAGATCTTCAGC 422
||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||
Sbjct 357 TCAACATTGGAGTTTCACTTCATCAAACCGCACCTCCTCCCATTCATCAAGATCTTCAGC 416
Query 423 CTCATAGACAGCACACAACCTCTCTGGTGACAAGGAAAGATTGTGCATCGTCTTCTAGGA 482
| |||| |||||||||||||||| |||| |||||||||||||||||||| ||||| ||||
Sbjct 417 CGCATAAACAGCACACAACCTCTATGGTAACAAGGAAAGATTGTGCATCATCTTCAAGGA 476
Query 483 GCACCAACAATTTATCGGAAAACATTGATCGTGAGGCTCCTAGAATGCCTCCTATTCGCC 542
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 477 GCACCAACAATTTATCGGAACACATCGATCGTGAGGCTCCTAGAATGCCTCCTATTCGCC 536
Query 543 CACCGGAGAAAAGACAACGTGTTCCTTCGGCCTACAACAGATTCATCAAGGAGGAAATCC 602
| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 537 CGCCGGAGAAAAGACAACGTGTACCTTCGGCCTACAACAGATTCATCAAAGAGGAAATCC 596
Query 603 AAAGGATTAAGGCTTGCAATCCAGAGATTAGCCACCGTGAGGCATTTAGCACTGCTGCTA 662
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 597 AAAGGATCAAGGCTTGCAATCCTGAGATTAGCCACCGTGAGGCATTTAGCACTGCTGCTA 656
Query 663 AAAATTGGGCACATTTTCCTCACATTCACTTTGGATTAAAGCTGGATGGCAACAAGAAAG 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AAAATTGGGCACATTTTCCTCACATTCACTTTGGATTAAAGCTGGATGGCAACAAGAAAG 716
Query 723 GCAAGCAATTAGACCAGTCAGTTGCAGGCCAAAAGTCTAATGGCTATTACTAAAGCCTTt 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GCAAGCAATTAGACCAGTCAGTTGCAGGCCAAAAGTCTAATGGCTATTACTAAAGCCTTT 776
Query 783 atatatatacacacatatatacacttatacgtatatatatgtgtatagatatatatgcgt 842
||||||| || ||||||||| || | | |||||||||| |||
Sbjct 777 ATATATA--CATACATATATATAC--A--C-TATATATATG----------------CGT 813
Query 843 gtgtatgatttatgtttatCTTTGTACGTACGCATTAATGAATGTGTAAGCAGAGAGCTG 902
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 814 GTGTATGCTTTATGTTTATCTTTGTACGTACGCATTTATGAATGTGTAAGCAGAGAGCTG 873
Query 903 ATGATGGAAAGAGATCAGGCGAGGAAGAAGAAGATCATATAACGTTACATATATATACAT 962
||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 874 ATGATGGAA-GAGATCAGGCGAGGAAGAAGAAGATCATATAACCTTACATATGTATACAT 932
Query 963 GTATGTAT 970
||||||||
Sbjct 933 GTATGTAT 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43803231633
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5