BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08470.1
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470908 jgi|Araly1|470908|fgenesh2_kg.1__862__AT1G08470.1 1910 0.0
> Ahg470908 jgi|Araly1|470908|fgenesh2_kg.1__862__AT1G08470.1
Length=1376
Score = 1910 bits (1034), Expect = 0.0
Identities = 1220/1304 (94%), Gaps = 35/1304 (3%)
Strand=Plus/Plus
Query 1 TTTTAAATTTTCAACCAG----AAAAGTGTACTCTACTGCAACTACTT-CTTCT-CTACT 54
|||||||||||||||||| ||||||||| |||| |||||||| | || || ||
Sbjct 1 TTTTAAATTTTCAACCAGAAAAAAAAGTGTA---TACT--AACTACTTCCAACTACTTCT 55
Query 55 TCTCTACCTTAAAACTTCCCCAACCATTTTCTTCTTCAAATCATCATCATCATCCCTCGT 114
||||| |||||||||||||||| ||| |||||||||| | | ||||||| |
Sbjct 56 TCTCTGCCTTAAAACTTCCCCATCCAATTTCTTCTTC--A--A--ATCATCA-------T 102
Query 115 ACAAAGAAAATGGCCATGAGCATACTCGCGAAGATCTTTCTCGTCTTTGCCATCTATTGC 174
| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 103 -C----AAAATGGCTTTGAGCATAGTCGCGAAGATCTTTCTCGTCTTTGCCATCTATTGC 157
Query 175 GCTATCGATCCCTTCAGTCACAGCTCCATTTCCAAGTTCCCGGATTTCAAAACTTACAAG 234
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 158 GCTCTCGATCCCTTCAGTCACAGCTCCATTTCCAAGTTCCCGGACTTCAAAACTTACACG 217
Query 235 ATTGACATGCCTCCGTTATCGTCACTTCCAAAGGAGAGAGACCGCCAGAATCTG-TTGCA 293
|||||||||||||| |||||||| ||||| |||||||||||||| |||||||| || ||
Sbjct 218 ATTGACATGCCTCCATTATCGTCCCTTCCCAAGGAGAGAGACCGTGAGAATCTGCTT-CA 276
Query 294 GAATTCAGAGATCAGGTTTCTTAACGAGGTTCAAGGTCCC-GAGAGCATTGCTTTCGATC 352
|||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 277 GAATTCGGAGATCAGGTTTCTTAACGAGGTTCAAGG-CCCTGAGAGTATTGCTTTCGATC 335
Query 353 CGCAAGGTCGTGGTCCTTATACCGGAGTCGCCGACGGTCGAATTCTCTTTTGGAATGGCA 412
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 336 CGCAAGGTCGTGGTCCTTATACCGGAGTCGCCGACGGTCGAATCCTCTTTTGGAATGGCA 395
Query 413 CTCGTTGGACAGATTTCGCATATACTTCGAACAATCGGTCAGAGCTATGTGATCCTAAGC 472
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 396 CTCGTTGGACCGATTTCGCCTATACTTCGAACAATCGGTCAGAGCTATGTGATCCAAAGC 455
Query 473 CATCGCTTTTGGATTACTTAAAGGATGAAGATATCTGTGGTCGGCCTTTAGGTCTTCGAT 532
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 CATCACTTTTGGATTACTTAAAGGATGAAGATATCTGTGGTCGGCCTTTAGGTCTTCGAT 515
Query 533 TCGACAAGAAAAA-TGGGGATTTGTACATTGCAGATGCGTATTTGGGGATAATGAAAGTT 591
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 TCGACAA-AAAAACTGGGGATTTGTACATTGCAGATGCGTATTTGGGGATAATGAAAGTT 574
Query 592 GGTCCGGAAGGAGGTTTAGCAACTTCTGTTACAAACGAGGCTGATGGTGTGCCTTTGAGA 651
||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 575 GGTCCTGAAGGAGGTTTAGCAACTTGTGTTACAAACGAGGCAGATGGTGTGCCTTTGAGA 634
Query 652 TTTACCAATGATCTTGACATTGATGATGAAGGCAATGTTTACTTTACTGATAGCAGCTCT 711
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 635 TTTACCAATGATCTTGACATTGATGACCAAGGCAATGTTTACTTTACTGATAGCAGTTCT 694
Query 712 TTCTTCCAACGAAGGAAATTTATGCTTTTGATTGTCTCGGGGGAAGACAGTGGGAGGGTG 771
|| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 695 TTTTTCCAACGAAGGAAATTCATGCTTTTGATTGTCTCGGGGGAAGACAGCGGGAGGGTG 754
Query 772 TTGAAATACAATCCAAAAACAAAGGAGACTACCACTCTCGTGAGAAATCTCCAGTTTCCT 831
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 755 TTGAAATACAATCCAAAAACAAAGGAGACTACCACTCTCGTAAGAAATCTCCAGTTTCCT 814
Query 832 AACGGATTATCCCTCGGCAAAGACGGCTCCTTTTTCATCTTTTGTGAAGGATCTATTGGA 891
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 815 AATGGATTATCCCTCGGCAAAGACGGCTCCTTTTTCATATTTTGTGAAGGATCAATTGGA 874
Query 892 AGATTACGGAAATACTGGTTGAAAGGGGAGAAAGCTGGAACGTCAGAAGTGGTAGCTCTA 951
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 875 AGATTACGGAAATACTGGTTGAAAGGAGAAAAAGCTGGAACGTCAGAAGTGGTAGCTCTA 934
Query 952 TTACATGGGTTCCCAGACAACATCCGCACAAACAAAGATGGAGATTTCTGGGTGGCGGTG 1011
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 935 TTACATGGGTTCCCAGACAACATCCGCACAAACAAAGACGGGGATTTCTGGGTGGCGGTG 994
Query 1012 CACTGCCACAGAAACATATTCACACACTTGATGGCGCATTACCCGAGGGTGAGGAAGTTC 1071
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 995 CACTGCCACAGAAACATATTCACACACGTGATGGCGCATCACCCGAGGGTGAGGAAGTTC 1054
Query 1072 TTTCTGAAGCTGCCGATATCAGTGAAGTTTCAGTACTTGCTGCAGGTAGGTGGTTGGCCT 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 TTTCTGAAGCTGCCGATATCAGTGAAGTTTCAGTACTTGCTGCAGGTAGGTGGTTGGCCT 1114
Query 1132 CATGCTGTAGCTGTGAAGTACAGTGAAGAAGGGAAAGTGCTAAAGGTGTTGGAAGATAGT 1191
||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1115 CATGCGGTGGCTGTGAAGTACAGTGAAGAAGGGAAGGTGCTAAAGGTGTTGGAAGATAGC 1174
Query 1192 AAAGGGAAAGTGGTGAAGGCAGTGAGTGAAGTGGAGGAGAAAGATGGGAAGCTTTGGATG 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 AAAGGGAAAGTGGTGAAGGCAGTGAGTGAAGTGGAGGAGAAAGATGGGAAGCTTTGGATG 1234
Query 1252 GGAAGTGTATTGATGTCCTTCATTGCCGTATATGACTTGCCTTA 1295
||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1235 GGAAGTGTATTGATGTCTTTCATTGCCGTGTATGACTTGCCTTA 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53516794225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5