BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G08480.1

Length=761
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919594 jgi|Araly1|919594|scaffold_100875.1                        743    0.0  


> Ahg919594 jgi|Araly1|919594|scaffold_100875.1
Length=469

 Score =  743 bits (402),  Expect = 0.0
 Identities = 442/462 (96%), Gaps = 0/462 (0%)
 Strand=Plus/Plus

Query  87   GATTAATCGATCTGAGAAAGATGGGAGATTCGGAGTCATTTGTTGGGAAAAATTGGAATG  146
            ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  1    GATAAATCGATCTGAGAAAGATGGGAGATTCGGAGTCATTTGTTGGCAAAAATTGGAATG  60

Query  147  GATTGAAGGATTTCTGGAGTGATAGGTTATCATTTTTCGAAAATTACACCAGATTCACCA  206
            |||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct  61   GATTCAAGGATTTCTGGAGTGATAGGTTATCTTTTTTCGATAATTACACCAGATTCACCA  120

Query  207  AACGCGACGCGCCTCTTCCTTCTTGGTCTTCCTCCGACGTCGAGGAATTCATTGCCTCCG  266
            |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  121  AACGCGACTCGCCTCTTCCTTCTTGGTCTTCCTCCGACGTCGACGAATTCATTGCCTCCG  180

Query  267  ATCCCGTTCATGGACCCACCCTGAAAACGGCTAGGGAAGCTGTGACGTTTGGTGTTACCG  326
            ||||  |||||||||||||||||||||| |||||||| |||||||| ||||||||||| |
Sbjct  181  ATCCTTTTCATGGACCCACCCTGAAAACTGCTAGGGATGCTGTGACCTTTGGTGTTACTG  240

Query  327  GAGCTGCACTTGGAGCTGTCTCTACTGCTGCTTTTGCCTGGAAATACTCCAGGAGTCCAC  386
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  241  GCGCTGCACTTGGAGCTGTCTCTACTGCTGCTTTTGCCTGGAAATACTCCAGGAGTCCTC  300

Query  387  ATGGTGCTGCATTGTCCTTCTTAGGAGGAGGTGTTTTTGGTTGGACCTTTGGGCAAGAGG  446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  ATGGTGCTGCATTGTCCTTCTTAGGAGGAGGTGTTTTTGGTTGGACCTTTGGGCAAGAGG  360

Query  447  TCGCCAACCACACACTGCAACTCTACAAGTTGGACACAATGGCAGCCCAAGTTAAGTTCA  506
            | ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| 
Sbjct  361  TTGCCAACCACACACTGCAACTCTATAAGTTGGACACTATGGCAGCCCAAGTTAAGTTCT  420

Query  507  TGGAATGGTGGGAACGTAAGTCTCAATAAAGGTCCTGAATCT  548
            ||||||||||||||||||||||||||| ||||||||||||||
Sbjct  421  TGGAATGGTGGGAACGTAAGTCTCAATGAAGGTCCTGAATCT  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28058466912


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5