BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08490.1
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470910 jgi|Araly1|470910|fgenesh2_kg.1__864__AT1G08490.1 2566 0.0
> Ahg470910 jgi|Araly1|470910|fgenesh2_kg.1__864__AT1G08490.1
Length=1710
Score = 2566 bits (1389), Expect = 0.0
Identities = 1619/1725 (94%), Gaps = 35/1725 (2%)
Strand=Plus/Plus
Query 1 GAACTTGTGACTTTGAAGACTC-ACTCTTGTTCATTCGTCTTCTCCACCATGGAAGGTGT 59
||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1 GAACTCGTGACATTGAAGACTCTACACTTGTTCATTCGTCTTCTCCACCATGGAAGGTGT 60
Query 60 GGCTATGAAACTCCCGTCG--------T-T---CCCTAACGCCATCTCCATCGGCCACCG 107
||||||||||||||||||| | | ||||||||| ||||| ||||| |||||
Sbjct 61 GGCTATGAAACTCCCGTCGTTCAAATCTCTCGCCCCTAACGCAATCTCTATCGGACACCG 120
Query 108 GAGCTTCTCCCGCGTTCGTTGCTCCTCTTCGCTATCCGTTTGTTCCGCCGCCGCCGCTTC 167
|||||||||||| |||||| ||||||||||||||||||| | || |||||||||||||
Sbjct 121 GAGCTTCTCCCGTGTTCGTCGCTCCTCTTCGCTATCCGTCTATT---CCGCCGCCGCTTC 177
Query 168 CTCCGCCACCATCTCCACTGATTCCGAATCCGTCTCTCTCGGCCATCGCGTTCGAAAAGA 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 178 CTCCGCCACCATCTCCACTGATTCCGAATCCGTCTCTCTCGGCCATCGCGTTCGAAACGA 237
Query 228 TTTCCGAATTCTCCACCAGGAAGTGAATGGGTCAAAGCTTGTGTACTTAGACAGTGCTGC 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTTCCGAATTCTCCACCAGGAAGTGAATGGGTCAAAGCTTGTGTACTTAGACAGTGCTGC 297
Query 288 AACTTCTCAGAAGCCAGCAGCTGTATTGGACGCTTTGCAGAATTACTATGAGTTCTATAA 347
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 298 AACTTCTCAGAAGCCATCAGCTGTATTGGACGCCTTGCAGAATTACTATGAGTTCTATAA 357
Query 348 TTCCAACGTTCATCGAGGAATACACTATTTAAGTGCTAAAGCTACAGATGAATTTGAGTT 407
||| ||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||
Sbjct 358 TTCTAACGTTCATCGAGGAATTCACTATTTAAGTGCCAAGGCTACGGATGAATTTGAGTT 417
Query 408 AGCTAGGAAAAAAGTTGCTCGTTTCATCAATGCTTCTGATAGTAGAGAGATTGTTTTTAC 467
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 418 GGCTAGGAAAAAAGTTGCTCGTTTCATCAATGCTTCTGATAGTAGAGAGATTGTTTTCAC 477
Query 468 AAGGAATGCCACTGAAGCCATCAATCTTGTAGCTTATTCATGGGGTCTTTCTAATCTTAA 527
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AAGGAATGCAACTGAAGCTATCAATCTTGTAGCTTATTCATGGGGTCTTTCTAATCTTAA 537
Query 528 ACCAGGAGACGAGGTTATACTTACAGTTGCTGAACATCATAGTTGCATTGTTCCTTGGCA 587
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 538 ACCAGGAGACGAGGTTATACTTACAGTGGCCGAACATCATAGTTGCATTGTTCCTTGGCA 597
Query 588 AATTGTATCTCAAAAAACTGGAGCAGTTCTAAAGTTTGTGACTTTGAATGAGGATGAAGT 647
||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 598 AATAGTATCTCAAAAAACTGGAGCTGTTCTAAAGTTTGTTACTTTGAATGAGGATGAAGT 657
Query 648 CCCTGACATA-AACAAGTTGAGAGAATTGATTTCTCCAAAGACAAAGCTCGTCGCTGTTC 706
||| |||||| || |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 658 CCCGGACATAGAA-AAGTTGAGAGAAATGATTTCTCCAAAGACAAAGCTCGTCGCTGTTC 716
Query 707 ATCATGTTTCTAATGTTCTTGCATCTTCTCTTCCTATTGAAGAGATTGTGGTATGGGCAC 766
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 717 ATCATGTTTCTAATGTTCTTGCATCTTCTCTTCCTATTGAAGAGATTGTGGTCTGGGCAC 776
Query 767 ACGATGTTGGAGCGAAAGTTCTAGTGGATGCTTGTCAAAGTGTTCCTCACATGGTGGTTG 826
|| ||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 777 ACAATGTTGGAGCGAAAGTTCTTGTCGATGCTTGTCAAAGTGTTCCTCACATGGTAGTTG 836
Query 827 ATGTCCAGAAGCTTAATGCTGATTTTCTAGTTGCGTCTTCTCACAAGATGTGTGGACCTA 886
||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 837 ATGTCCAGAAGCTAAATGCTGATTTCCTAGTTGCATCTTCTCATAAGATGTGTGGACCTA 896
Query 887 CAGGCATTGGGTTCTTATATGGTAAGAGTGATCTTCTACATTCCATGCCTCCATTCTTAG 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CAGGCATTGGGTTCTTATATGGTAAGAGTGATCTTCTACATTCCATGCCTCCATTCTTAG 956
Query 947 GTGGCGGAGAAATGATCTCAGATGTATTTCTTGACCATTCAACTTATGCGGAACCTCCAT 1006
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 957 GTGGCGGTGAAATGATCTCAGATGTATTTCTTGACCATTCAACTTATGCCGAACCTCCAT 1016
Query 1007 CCAGATTTGAAGCTGGAACACCTGCAATAGGAGAAGCAATTGCCCTTGGAGCAGCAGTTG 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CCAGATTTGAAGCTGGAACACCTGCAATAGGAGAAGCAATTGCCCTTGGAGCAGCAGTTG 1076
Query 1067 ATTACTTGTCAGGAATTGGCATGCCGAAAATCCATGAATATGAGGTAGAGA-TTGGTAAG 1125
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1077 ATTACTTGTCAGGAATTGGCATGCCGAAAATCCATGAATATGAGGTAGA-ACTTGGTAAG 1135
Query 1126 TATTTGTACGAGAAACTGTCTTCCCTGCCTGATGTGCGGATATACGGTCCCAGACCTTCT 1185
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1136 TATTTGTACGAGAAACTGTCTTCCCTTCCTGATGTCCGGATATACGGTCCCAGACCTTCT 1195
Query 1186 GAAAGTGTTCACAGGGGTGCTCTTTGTTCCTTCAATGTGGAGGGCTTGCACCCAACTGAT 1245
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1196 GAAAGTGTTCACAGGGGTTCTCTTTGTTCCTTCAACGTGGAGGGCTTGCACCCAACTGAT 1255
Query 1246 TTGGCAACCTTTCTTGATCAGCAGCACGGAGTTGCAATAAGGTCAGGACACCACTGCGCA 1305
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 1256 TTGGCAACCTTTCTTGATCAACAGCATGGAGTTGCCATAAGGTCAGGACACCACTGCGCA 1315
Query 1306 CAGCCACTCCACCGGTATCTTGGAGTGAATGCAAGTGCACGCGCCAGCCTCTACTTTTAC 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CAGCCACTCCACCGGTATCTTGGAGTGAATGCAAGTGCACGCGCCAGCCTCTACTTTTAC 1375
Query 1366 AACACAAAGGATGACGTTGACGCCTTCATCGTTGCGCTGGCAGACACTGTGAGCTTCTTC 1425
||||| ||||| ||||||||| ||||||| | |||||| |||||||||||||||||||||
Sbjct 1376 AACACGAAGGAGGACGTTGACTCCTTCATTGCTGCGCTTGCAGACACTGTGAGCTTCTTC 1435
Query 1426 AACTCTTTCAAATAAGTGGAACACCTTCCTGCTGGATCTCTCGGCTGGT-TTGTATGGTA 1484
|| ||||||||||||||||||||||| |||| ||||||||| ||||||| || |||||||
Sbjct 1436 AATTCTTTCAAATAAGTGGAACACCTACCTGTTGGATCTCTGGGCTGGTGTT-TATGGTA 1494
Query 1485 TATTGCTTCAGAGGCTACTTA-TTTAAATCTGCTTT-ATATGATCAATGGGAGTGGATTT 1542
|||||||||| |||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1495 TATTGCTTCAAAGGCTA-TTAATTTAAATCTGCTTTTATATGATCAATGGGAGTGGATTT 1553
Query 1543 TGTTTCTTCAAGTCCGAAGGGCAATTTGTGTTGTAGTTAGCAATTTGTATGAAAAAA-TA 1601
|| |||||||||||| |||||| ||||||||||||||||||| || ||||||||||| ||
Sbjct 1554 TGGTTCTTCAAGTCCCAAGGGCCATTTGTGTTGTAGTTAGCACTT-GTATGAAAAAAATA 1612
Query 1602 GACC-GACAGTAGTCATGAACAATTTCAGGCCTCTACTTGATCATATTTGTACGAATACA 1660
|||| | ||||||| |||||||||||||||| || ||||||||||||| ||| |||
Sbjct 1613 GACCAG-CAGTAGT-ATGAACAATTTCAGGCATC-----GATCATATTTGTAGGAAAACA 1665
Query 1661 CACGAAAGCAAATGCTTCGTTGTTAATTTGTAAGTTTCATAAAAA 1705
|||| |||| ||||||||||||||| ||||||||| || |||||
Sbjct 1666 TACGACAGCACATGCTTCGTTGTTAACTTGTAAGTTGCAGAAAAA 1710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66086575075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5