BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08500.1
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470911 jgi|Araly1|470911|fgenesh2_kg.1__865__AT1G08500.1 1266 0.0
> Ahg470911 jgi|Araly1|470911|fgenesh2_kg.1__865__AT1G08500.1
Length=947
Score = 1266 bits (685), Expect = 0.0
Identities = 875/962 (91%), Gaps = 32/962 (3%)
Strand=Plus/Plus
Query 1 ACAGTTTCTTATGCCTTTCTTTATTACAAAG-AA-A-GATCAATCAACGAATCACAATTT 57
|||||||||||| |||||||||||||||||| || | ||||||||||||||||||||||
Sbjct 1 ACAGTTTCTTATACCTTTCTTTATTACAAAGAAATACTATCAATCAACGAATCACAATTT 60
Query 58 ATAATCAAG--AA---AAACGGACAAGAGAGTAAGAAGAATTATGTCGCCTTCTTGTTCA 112
||||||||| || ||| ||| ||||||| ||| ||| |||||| | |||| |||||
Sbjct 61 ATAATCAAGAAAACGTAAATGGAAAAGAGAGGAAGCAGAGTTATGTTGAGTTCTAGTTCA 120
Query 113 TCTTGTGTCAATGTG-T--TACTCATCATGTGCCTTATGCTTCTGAGTTTATCAGCTGAT 169
|||||||| |||||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 TCTTGTGTTAATGTGTTACTACTCATCATGTGCCTTATGCTTCTGAGTTTGTCAGCTGAT 180
Query 170 GCGTACAAGAACTACACTGTGGGAGAGTCCACGGGATGGTTCGATATTCAAGAGAGACCC 229
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GCGTACAAGAACTACACTGTGGGAGAGTCCACGGGATGGTTCGATATTCAGGAGAGACCC 240
Query 230 TCTGCTAATTATCAGAAATGGGCCGATTCCAAATCCTTTTCTTTGGGTGATTTCCTCATA 289
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 241 TCTGCTAATTATCAGAAATGGGCTGATTCCAAATCCTTCTCTTTGGGTGATTTCCTCATT 300
Query 290 TTCAACACAGATAGCAACCATTCGGTGGTTCAGACATATGATTTCAAAACATACAAAGAT 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCAACACAGATAGCAACCATTCGGTGGTTCAGACATATGATTTCAAAACATACAAAGAT 360
Query 350 TGTGATTACGACAACAATGAAAACAATGATACAACAGAGTGGTCGGCTGCAAATCCTTCA 409
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGTGATTACGACAATAATGAAAACAATGATACAACAGAGTGGTCGGCTGCAAATCCTTCA 420
Query 410 GCAACATCTCCTGTTCCCGTCTCAATAAGTGTTCCTCTTGTTAAAGAAGGTTCCAATTAT 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCAACATCTCCTGTTCCCGTCTCAATAAGTGTTCCTCTTGTTAAAGAAGGTTCCAATTAT 480
Query 470 TTCTTCTCGGGAAACTATGATGGCGAACAATGTAAATTCGGTCAGCATTTTATGATCAAT 529
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 TTCTTCTCGGGAAATTATGATGGCGAACAATGTAAATTCGGACAGCATTTTATGATCAAT 540
Query 530 GTAACACATGGTCAGGGCTTACCAGATTCATCATCACCAGATGATGCTGCTGCACCTGGA 589
||||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||||
Sbjct 541 GTAACACATGGTCAGGGCTTACCCGATTTATCATCACCAGATGAAGCTGCTGCGCCTGGA 600
Query 590 CCTAGCGAATCCTCTCAGTCCGGTGATGATGAAGTTGCTCCTGATACCATCGTCCCGGCC 649
|| || | || | |||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 CC-AG-G---CCA---A-TCCGGTGATGATGAAGTTGCTCCTGACACCATCGTCCCGGCC 651
Query 650 AATTTCGATCATCCTAAAGATATTGAAAGTGCT---GATGATGATAAAGAGGTTCATAGT 706
|||||||| |||||||||||||||||||||| | ||||||||||||||||||| || |
Sbjct 652 AATTTCGACCATCCTAAAGATATTGAAAGTGATAATGATGATGATAAAGAGGTTCGTAAT 711
Query 707 aaaaaaaGTTCTTCTTCCACAACAAAAACTAGTTTGTTTTGTTTTGTCTTTATGGGGCTC 766
| ||||||||||||||||| ||||||| ||| |||||||||||| |||||||||||| ||
Sbjct 712 AGAAAAAGTTCTTCTTCCATAACAAAATCTAATTTGTTTTGTTTAGTCTTTATGGGGTTC 771
Query 767 TTTGCATCATTTTAATCAAATATTCTTTCA-TATTTGTATGTATATGCATTCTGTTTTCT 825
|||||||||||||||||||||||||||| | | ||| | |||||| ||||||| ||||||
Sbjct 772 TTTGCATCATTTTAATCAAATATTCTTTGACTTTTTTT-TGTATAAGCATTCTCTTTTCT 830
Query 826 TCTTTTT-CATAACTAGGATAATAATAATCAAAGAAACAAAAGAGTATTAGTGGAAATTT 884
||||||| |||||| || |||||||||| || |||||| | ||| |||||||||| |||
Sbjct 831 TCTTTTTTCATAACCAGAATAATAATAA--AA-GAAACAGA-GAGCATTAGTGGAAGTTT 886
Query 885 TAAAGCAGTGAGGGAATAAAGaaaaaa-aGAGTAAAGATCATGAGTTATCCtttttttAT 943
|||| ||| ||| ||| |||| |||| |||||||||| ||||||| ||| ||||||||
Sbjct 887 TAAAACAGAAAGGAAATGAAGAGAAAACAGAGTAAAGAA-ATGAGTTTTCCATTTTTTAT 945
Query 944 CG 945
||
Sbjct 946 CG 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35073083640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5